Wall clock time and date at job start Mon Mar 30 2020 02:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47063 * 2 1 4 4 C 1.50705 * 109.46942 * 119.99784 * 2 1 3 5 5 H 1.07999 * 119.99702 * 120.00087 * 4 2 1 6 6 C 1.37875 * 120.00241 * 299.99914 * 4 2 1 7 7 N 1.31519 * 120.00070 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00089 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46892 * 59.99679 * 8 6 4 10 10 H 1.48493 * 109.46895 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46924 * 299.99900 * 8 6 4 12 12 N 1.46895 * 109.47171 * 239.99756 * 2 1 3 13 13 N 1.36602 * 110.99814 * 300.00304 * 12 2 1 14 14 C 1.39004 * 119.99667 * 180.02562 * 13 12 2 15 15 C 1.39139 * 119.70540 * 180.02562 * 14 13 12 16 16 C 1.38303 * 119.09870 * 179.97438 * 15 14 13 17 17 C 1.38882 * 118.50152 * 359.75077 * 16 15 14 18 18 C 1.38019 * 119.33362 * 0.49484 * 17 16 15 19 19 N 1.31973 * 120.85191 * 359.49158 * 18 17 16 20 20 H 1.08994 * 109.47319 * 59.99729 * 1 2 3 21 21 H 1.09003 * 109.47286 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47174 * 300.00018 * 1 2 3 23 23 H 0.96988 * 120.00154 * 180.02562 * 7 6 4 24 24 H 1.00903 * 110.99951 * 63.95051 * 12 2 1 25 25 H 0.96997 * 120.00428 * 359.97438 * 13 12 2 26 26 H 1.08004 * 120.45005 * 359.94848 * 15 14 13 27 27 H 1.07994 * 120.74650 * 179.97438 * 16 15 14 28 28 H 1.08003 * 120.33430 * 180.26481 * 17 16 15 29 29 H 1.08002 * 119.57644 * 179.77703 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9427 0.8297 2.6035 8 14 2.3225 -1.1195 4.0080 9 1 3.8074 -1.1190 4.0077 10 1 1.8279 -0.4191 5.2204 11 1 1.8280 -2.5197 4.0083 12 7 2.0197 -0.6925 -1.1994 13 7 1.5816 -1.9860 -1.2309 14 6 1.9372 -2.8146 -2.2888 15 6 1.4872 -4.1309 -2.3150 16 6 1.8481 -4.9442 -3.3739 17 6 2.6458 -4.4103 -4.3776 18 6 3.0605 -3.0971 -4.2851 19 7 2.7006 -2.3441 -3.2628 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 0.7088 1.1613 3.4844 24 1 1.7502 -0.1990 -2.0372 25 1 1.0230 -2.3265 -0.5147 26 1 0.8648 -4.5126 -1.5191 27 1 1.5141 -5.9701 -3.4209 28 1 2.9416 -5.0176 -5.2203 29 1 3.6839 -2.6790 -5.0616 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307321385.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:49 Heat of formation + Delta-G solvation = 67.605519 kcal Electronic energy + Delta-G solvation = -13114.928459 eV Core-core repulsion = 10846.055653 eV Total energy + Delta-G solvation = -2268.872806 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.66135 -37.05337 -33.52898 -31.86202 -31.47731 -28.90323 -26.39132 -25.28998 -23.05443 -22.05775 -20.34161 -17.74539 -16.84081 -15.76482 -15.60902 -14.89533 -14.48024 -14.16021 -13.80445 -12.95193 -12.69360 -12.54806 -12.32164 -11.49879 -11.29550 -11.04266 -10.80469 -10.42883 -10.35602 -10.10336 -9.42221 -9.16913 -8.88403 -8.52918 -8.29323 -6.41297 -6.14513 -4.20091 1.70625 1.91125 3.26014 3.30870 3.34626 3.69584 4.32945 4.39490 4.88557 5.17436 5.20369 5.52812 5.58060 5.61537 6.05591 6.15212 6.45317 6.51011 6.63318 6.66469 6.77256 7.02842 7.27070 7.53838 7.64622 7.90337 8.13603 8.35151 8.68631 8.83441 9.20818 9.47854 10.92467 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.047448 B = 0.007894 C = 0.007311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.980861 B = 3546.090704 C = 3829.047366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.191 3.809 3 H 0.060 0.940 4 C -0.510 4.510 5 H 0.064 0.936 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.437 5.437 13 N -0.542 5.542 14 C 0.416 3.584 15 C -0.254 4.254 16 C -0.032 4.032 17 C -0.265 4.265 18 C 0.151 3.849 19 N -0.535 5.535 20 H 0.011 0.989 21 H 0.025 0.975 22 H 0.094 0.906 23 H 0.263 0.737 24 H 0.315 0.685 25 H 0.414 0.586 26 H 0.124 0.876 27 H 0.124 0.876 28 H 0.121 0.879 29 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.389 -7.959 -9.104 12.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.084 3.916 3 H 0.077 0.923 4 C -0.548 4.548 5 H 0.083 0.917 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.729 3.271 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.159 5.159 13 N -0.262 5.262 14 C 0.176 3.824 15 C -0.281 4.281 16 C -0.058 4.058 17 C -0.290 4.290 18 C -0.009 4.009 19 N -0.254 5.254 20 H 0.030 0.970 21 H 0.044 0.956 22 H 0.113 0.887 23 H 0.073 0.927 24 H 0.133 0.867 25 H 0.256 0.744 26 H 0.142 0.858 27 H 0.141 0.859 28 H 0.139 0.861 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.435 -6.887 -8.517 10.962 hybrid contribution -1.181 -1.159 0.948 1.907 sum -0.746 -8.046 -7.568 11.072 Atomic orbital electron populations 1.22445 1.00389 0.99174 1.01284 1.19768 0.90173 0.95200 0.86506 0.92262 1.21032 1.31297 1.13038 0.89458 0.91737 1.24947 0.94922 0.95044 0.99189 1.69856 1.36493 1.22802 1.23874 0.86508 0.79382 0.79499 0.81741 1.20111 1.21303 1.20305 1.62393 1.56307 0.90968 1.06273 1.43990 1.53195 1.06681 1.22352 1.18337 0.89610 0.87311 0.87166 1.21175 1.09845 0.94165 1.02919 1.21101 0.93885 0.98606 0.92238 1.21597 1.07168 0.97918 1.02284 1.22359 0.94473 0.90344 0.93684 1.67279 1.16306 1.38568 1.03292 0.97025 0.95610 0.88713 0.92703 0.86661 0.74366 0.85781 0.85851 0.86137 0.83623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.99 8.95 37.16 0.33 -3.65 15 2 C 0.19 4.67 3.08 -68.86 -0.21 4.46 15 3 H 0.06 1.57 8.14 -51.93 -0.42 1.15 15 4 C -0.51 -13.58 7.90 -34.44 -0.27 -13.85 15 5 H 0.06 1.77 7.68 -52.49 -0.40 1.36 15 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 15 7 N -0.89 -24.56 11.32 55.43 0.63 -23.93 15 8 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 15 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 12 N -0.44 -9.67 6.59 -5.66 -0.04 -9.71 15 13 N -0.54 -11.02 5.30 31.13 0.17 -10.86 15 14 C 0.42 7.78 7.55 -155.02 -1.17 6.61 15 15 C -0.25 -4.00 9.94 -39.22 -0.39 -4.39 15 16 C -0.03 -0.43 10.17 -39.32 -0.40 -0.83 15 17 C -0.27 -3.49 10.10 -39.42 -0.40 -3.89 15 18 C 0.15 2.26 11.17 -17.57 -0.20 2.06 15 19 N -0.54 -9.96 9.80 -12.44 -0.12 -10.08 15 20 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 15 21 H 0.02 0.55 6.82 -51.93 -0.35 0.20 15 22 H 0.09 2.41 6.07 -51.93 -0.32 2.09 15 23 H 0.26 6.96 8.31 -40.82 -0.34 6.62 15 24 H 0.32 6.61 8.84 -181.36 -1.60 5.01 15 25 H 0.41 8.38 6.60 -185.16 -1.22 7.16 15 26 H 0.12 1.75 8.06 -52.48 -0.42 1.33 15 27 H 0.12 1.27 8.06 -52.49 -0.42 0.85 15 28 H 0.12 1.23 8.06 -52.48 -0.42 0.81 15 29 H 0.15 1.73 8.06 -52.49 -0.42 1.30 15 LS Contribution 250.86 15.07 3.78 3.78 Total: -1.00 -28.41 250.86 -8.98 -37.38 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -5.57 Total: 9.40 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -2.80 Total: -11.95 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.63 Total: -54.58 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -28.41 -8.98 -37.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307321385.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.989 kcal (2) G-P(sol) polarization free energy of solvation -28.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds