Wall clock time and date at job start Mon Mar 30 2020 02:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47140 * 65.92533 * 3 2 1 5 5 C 1.36902 * 119.99799 * 263.88769 * 4 3 2 6 6 H 1.07998 * 119.99632 * 199.91586 * 5 4 3 7 7 C 1.38718 * 120.00216 * 19.91535 * 5 4 3 8 8 N 1.31627 * 119.99803 * 21.96506 * 7 5 4 9 9 Si 1.86795 * 120.00032 * 201.97036 * 7 5 4 10 10 H 1.48502 * 109.47219 * 89.99846 * 9 7 5 11 11 H 1.48504 * 109.46811 * 209.99985 * 9 7 5 12 12 H 1.48493 * 109.47186 * 329.99852 * 9 7 5 13 13 C 1.38179 * 119.99788 * 83.88432 * 4 3 2 14 14 N 1.30116 * 125.47102 * 359.69816 * 13 4 3 15 15 C 1.31626 * 116.99045 * 179.84221 * 14 13 4 16 16 C 1.33520 * 115.83289 * 0.44703 * 15 14 13 17 17 S 1.76178 * 125.46226 * 180.02562 * 13 4 3 18 18 H 4.40646 * 5.51316 * 180.02562 * 4 1 2 19 19 H 1.09004 * 109.46528 * 185.92199 * 3 2 1 20 20 H 1.08998 * 109.47626 * 305.92035 * 3 2 1 21 21 H 0.97002 * 119.99435 * 179.97438 * 8 7 5 22 22 H 1.07996 * 122.08130 * 180.21447 * 15 14 13 23 23 H 1.07998 * 125.87796 * 179.76680 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5626 -1.2611 5 6 3.4824 -1.8848 -1.3310 6 1 4.1279 -2.2322 -2.1241 7 6 3.0057 -2.7785 -0.3831 8 7 1.9186 -2.4934 0.3021 9 14 3.9067 -4.3862 -0.0789 10 1 4.9268 -4.1890 0.9822 11 1 2.9360 -5.4233 0.3542 12 1 4.5736 -4.8246 -1.3311 13 6 3.2444 0.2408 -2.3800 14 7 2.9396 1.5046 -2.4349 15 6 3.1128 2.1112 -3.5901 16 6 3.5770 1.3493 -4.5835 17 16 3.8118 -0.2837 -3.9633 18 1 -1.0499 0.0001 -0.0002 19 1 3.0088 1.0231 0.1060 20 1 3.0097 -0.6020 0.8322 21 1 1.5851 -3.1185 0.9646 22 1 2.8897 3.1589 -3.7270 23 1 3.7744 1.6771 -5.5934 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307330310.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:36 Heat of formation + Delta-G solvation = 115.576272 kcal Electronic energy + Delta-G solvation = -11161.967962 eV Core-core repulsion = 9104.376438 eV Total energy + Delta-G solvation = -2057.591523 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.037 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.30673 -36.38534 -32.27272 -31.71569 -28.26063 -26.85942 -24.92715 -22.24504 -18.93258 -18.42302 -17.13884 -16.38656 -15.35726 -14.60360 -14.04131 -13.88330 -13.54771 -12.67053 -12.20830 -11.94564 -11.76301 -11.22307 -11.02354 -10.58370 -10.18463 -9.92292 -9.36749 -9.02613 -8.68408 -8.30911 -8.08171 -6.94312 -6.62761 -4.06722 2.13612 2.45330 3.02923 3.07350 3.10804 3.16013 3.71831 3.97713 4.16037 4.16491 4.72064 4.85713 5.54787 5.81516 6.28161 6.40725 6.58330 6.72133 7.02536 7.09416 7.18294 7.67810 8.18510 8.82136 8.85262 8.90600 9.42211 10.28455 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.032839 B = 0.013709 C = 0.010277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.442636 B = 2041.976359 C = 2723.962071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.108 4.108 3 C 0.252 3.748 4 N -0.375 5.375 5 C -0.325 4.325 6 H 0.107 0.893 7 C 0.040 3.960 8 N -0.833 5.833 9 Si 0.932 3.068 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.265 1.265 13 C 0.324 3.676 14 N -0.608 5.608 15 C 0.111 3.889 16 C -0.375 4.375 17 S -0.019 6.019 18 H 0.199 0.801 19 H 0.076 0.924 20 H 0.105 0.895 21 H 0.277 0.723 22 H 0.147 0.853 23 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.809 1.424 -0.881 2.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.110 4.110 3 C 0.128 3.872 4 N -0.069 5.069 5 C -0.455 4.455 6 H 0.124 0.876 7 C -0.170 4.170 8 N -0.465 5.465 9 Si 0.757 3.243 10 H -0.197 1.197 11 H -0.205 1.205 12 H -0.189 1.189 13 C -0.044 4.044 14 N -0.339 5.339 15 C -0.043 4.043 16 C -0.519 4.519 17 S 0.226 5.774 18 H 0.216 0.784 19 H 0.094 0.906 20 H 0.123 0.877 21 H 0.088 0.912 22 H 0.164 0.836 23 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.839 0.431 -0.432 1.938 hybrid contribution -0.202 0.026 -0.091 0.223 sum 1.637 0.457 -0.524 1.779 Atomic orbital electron populations 1.24206 0.95317 1.06265 1.01842 1.22940 0.94153 0.95305 0.98576 1.18208 0.84630 0.97595 0.86811 1.42194 1.54009 1.07157 1.03553 1.19725 1.28429 0.81727 1.15601 0.87573 1.25418 0.94706 1.00016 0.96906 1.70230 1.16324 1.37445 1.22548 0.85833 0.79132 0.79920 0.79465 1.19701 1.20536 1.18915 1.24380 0.99519 0.90742 0.89781 1.66388 1.34233 1.06638 1.26671 1.20906 0.96800 0.99390 0.87212 1.25559 1.26395 0.95928 1.04065 1.84460 1.72421 1.13429 1.07128 0.78414 0.90619 0.87726 0.91233 0.83608 0.83449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.72 19.25 29.55 0.57 -5.15 14 2 C -0.11 -2.58 11.44 -37.12 -0.42 -3.01 14 3 C 0.25 5.91 5.20 -6.83 -0.04 5.87 14 4 N -0.37 -9.39 2.68 -118.72 -0.32 -9.71 14 5 C -0.33 -8.15 9.28 -15.11 -0.14 -8.29 14 6 H 0.11 2.62 7.09 -52.49 -0.37 2.25 14 7 C 0.04 0.95 4.82 -17.46 -0.08 0.87 14 8 N -0.83 -20.66 9.60 55.49 0.53 -20.12 14 9 Si 0.93 18.59 29.61 -169.99 -5.03 13.56 14 10 H -0.27 -5.32 7.11 56.52 0.40 -4.92 14 11 H -0.28 -5.60 7.11 56.52 0.40 -5.20 14 12 H -0.26 -5.26 7.11 56.52 0.40 -4.86 14 13 C 0.32 8.00 7.82 -87.75 -0.69 7.32 14 14 N -0.61 -14.56 9.95 -14.00 -0.14 -14.70 14 15 C 0.11 2.32 11.25 -19.29 -0.22 2.11 14 16 C -0.37 -7.59 11.34 29.08 0.33 -7.26 14 17 S -0.02 -0.43 22.14 -107.50 -2.38 -2.81 14 18 H 0.20 3.60 7.80 -54.10 -0.42 3.18 14 19 H 0.08 1.67 7.82 -51.93 -0.41 1.26 14 20 H 0.10 2.42 6.62 -51.93 -0.34 2.08 14 21 H 0.28 6.49 8.31 -40.82 -0.34 6.15 14 22 H 0.15 2.54 8.06 -52.49 -0.42 2.12 14 23 H 0.15 2.54 8.06 -52.49 -0.42 2.12 14 LS Contribution 229.45 15.07 3.46 3.46 Total: -1.00 -27.59 229.45 -6.09 -33.69 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -1.52 Total: 4.18 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -0.69 Total: -7.54 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.08 Total: -44.53 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Atomic # 16 Polarization: -0.43 SS G_CDS: -2.38 Total: -2.81 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -27.59 -6.09 -33.69 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307330310.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.263 kcal (2) G-P(sol) polarization free energy of solvation -27.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds