Wall clock time and date at job start Mon Mar 30 2020 02:45:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17405 * 1
3 3 C 1.47199 * 179.97438 * 2 1
4 4 N 1.46504 * 109.47140 * 65.92533 * 3 2 1
5 5 C 1.36902 * 119.99799 * 263.88769 * 4 3 2
6 6 H 1.07998 * 119.99632 * 199.91586 * 5 4 3
7 7 C 1.38718 * 120.00216 * 19.91535 * 5 4 3
8 8 N 1.31627 * 119.99803 * 21.96506 * 7 5 4
9 9 Si 1.86795 * 120.00032 * 201.97036 * 7 5 4
10 10 H 1.48502 * 109.47219 * 89.99846 * 9 7 5
11 11 H 1.48504 * 109.46811 * 209.99985 * 9 7 5
12 12 H 1.48493 * 109.47186 * 329.99852 * 9 7 5
13 13 C 1.38179 * 119.99788 * 83.88432 * 4 3 2
14 14 N 1.30116 * 125.47102 * 359.69816 * 13 4 3
15 15 C 1.31626 * 116.99045 * 179.84221 * 14 13 4
16 16 C 1.33520 * 115.83289 * 0.44703 * 15 14 13
17 17 S 1.76178 * 125.46226 * 180.02562 * 13 4 3
18 18 H 4.40646 * 5.51316 * 180.02562 * 4 1 2
19 19 H 1.09004 * 109.46528 * 185.92199 * 3 2 1
20 20 H 1.08998 * 109.47626 * 305.92035 * 3 2 1
21 21 H 0.97002 * 119.99435 * 179.97438 * 8 7 5
22 22 H 1.07996 * 122.08130 * 180.21447 * 15 14 13
23 23 H 1.07998 * 125.87796 * 179.76680 * 16 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1741 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1346 -0.5626 -1.2611
5 6 3.4824 -1.8848 -1.3310
6 1 4.1279 -2.2322 -2.1241
7 6 3.0057 -2.7785 -0.3831
8 7 1.9186 -2.4934 0.3021
9 14 3.9067 -4.3862 -0.0789
10 1 4.9268 -4.1890 0.9822
11 1 2.9360 -5.4233 0.3542
12 1 4.5736 -4.8246 -1.3311
13 6 3.2444 0.2408 -2.3800
14 7 2.9396 1.5046 -2.4349
15 6 3.1128 2.1112 -3.5901
16 6 3.5770 1.3493 -4.5835
17 16 3.8118 -0.2837 -3.9633
18 1 -1.0499 0.0001 -0.0002
19 1 3.0088 1.0231 0.1060
20 1 3.0097 -0.6020 0.8322
21 1 1.5851 -3.1185 0.9646
22 1 2.8897 3.1589 -3.7270
23 1 3.7744 1.6771 -5.5934
RHF calculation, no. of doubly occupied orbitals= 34
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000307330310.mol2 23
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:45:36
Heat of formation + Delta-G solvation = 115.576272 kcal
Electronic energy + Delta-G solvation = -11161.967962 eV
Core-core repulsion = 9104.376438 eV
Total energy + Delta-G solvation = -2057.591523 eV
No. of doubly occupied orbitals = 34
Molecular weight
(most abundant/longest-lived isotopes) = 208.037 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-38.30673 -36.38534 -32.27272 -31.71569 -28.26063 -26.85942 -24.92715 -22.24504
-18.93258 -18.42302 -17.13884 -16.38656 -15.35726 -14.60360 -14.04131 -13.88330
-13.54771 -12.67053 -12.20830 -11.94564 -11.76301 -11.22307 -11.02354 -10.58370
-10.18463 -9.92292 -9.36749 -9.02613 -8.68408 -8.30911 -8.08171 -6.94312
-6.62761 -4.06722 2.13612 2.45330 3.02923 3.07350 3.10804 3.16013
3.71831 3.97713 4.16037 4.16491 4.72064 4.85713 5.54787 5.81516
6.28161 6.40725 6.58330 6.72133 7.02536 7.09416 7.18294 7.67810
8.18510 8.82136 8.85262 8.90600 9.42211 10.28455
Molecular weight = 208.04amu
Principal moments of inertia in cm(-1)
A = 0.032839 B = 0.013709 C = 0.010277
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 852.442636 B = 2041.976359 C = 2723.962071
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.257 4.257
2 C -0.108 4.108
3 C 0.252 3.748
4 N -0.375 5.375
5 C -0.325 4.325
6 H 0.107 0.893
7 C 0.040 3.960
8 N -0.833 5.833
9 Si 0.932 3.068
10 H -0.272 1.272
11 H -0.280 1.280
12 H -0.265 1.265
13 C 0.324 3.676
14 N -0.608 5.608
15 C 0.111 3.889
16 C -0.375 4.375
17 S -0.019 6.019
18 H 0.199 0.801
19 H 0.076 0.924
20 H 0.105 0.895
21 H 0.277 0.723
22 H 0.147 0.853
23 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.809 1.424 -0.881 2.465
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.276 4.276
2 C -0.110 4.110
3 C 0.128 3.872
4 N -0.069 5.069
5 C -0.455 4.455
6 H 0.124 0.876
7 C -0.170 4.170
8 N -0.465 5.465
9 Si 0.757 3.243
10 H -0.197 1.197
11 H -0.205 1.205
12 H -0.189 1.189
13 C -0.044 4.044
14 N -0.339 5.339
15 C -0.043 4.043
16 C -0.519 4.519
17 S 0.226 5.774
18 H 0.216 0.784
19 H 0.094 0.906
20 H 0.123 0.877
21 H 0.088 0.912
22 H 0.164 0.836
23 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges 1.839 0.431 -0.432 1.938
hybrid contribution -0.202 0.026 -0.091 0.223
sum 1.637 0.457 -0.524 1.779
Atomic orbital electron populations
1.24206 0.95317 1.06265 1.01842 1.22940 0.94153 0.95305 0.98576
1.18208 0.84630 0.97595 0.86811 1.42194 1.54009 1.07157 1.03553
1.19725 1.28429 0.81727 1.15601 0.87573 1.25418 0.94706 1.00016
0.96906 1.70230 1.16324 1.37445 1.22548 0.85833 0.79132 0.79920
0.79465 1.19701 1.20536 1.18915 1.24380 0.99519 0.90742 0.89781
1.66388 1.34233 1.06638 1.26671 1.20906 0.96800 0.99390 0.87212
1.25559 1.26395 0.95928 1.04065 1.84460 1.72421 1.13429 1.07128
0.78414 0.90619 0.87726 0.91233 0.83608 0.83449
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 21.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.26 -5.72 19.25 29.55 0.57 -5.15 14
2 C -0.11 -2.58 11.44 -37.12 -0.42 -3.01 14
3 C 0.25 5.91 5.20 -6.83 -0.04 5.87 14
4 N -0.37 -9.39 2.68 -118.72 -0.32 -9.71 14
5 C -0.33 -8.15 9.28 -15.11 -0.14 -8.29 14
6 H 0.11 2.62 7.09 -52.49 -0.37 2.25 14
7 C 0.04 0.95 4.82 -17.46 -0.08 0.87 14
8 N -0.83 -20.66 9.60 55.49 0.53 -20.12 14
9 Si 0.93 18.59 29.61 -169.99 -5.03 13.56 14
10 H -0.27 -5.32 7.11 56.52 0.40 -4.92 14
11 H -0.28 -5.60 7.11 56.52 0.40 -5.20 14
12 H -0.26 -5.26 7.11 56.52 0.40 -4.86 14
13 C 0.32 8.00 7.82 -87.75 -0.69 7.32 14
14 N -0.61 -14.56 9.95 -14.00 -0.14 -14.70 14
15 C 0.11 2.32 11.25 -19.29 -0.22 2.11 14
16 C -0.37 -7.59 11.34 29.08 0.33 -7.26 14
17 S -0.02 -0.43 22.14 -107.50 -2.38 -2.81 14
18 H 0.20 3.60 7.80 -54.10 -0.42 3.18 14
19 H 0.08 1.67 7.82 -51.93 -0.41 1.26 14
20 H 0.10 2.42 6.62 -51.93 -0.34 2.08 14
21 H 0.28 6.49 8.31 -40.82 -0.34 6.15 14
22 H 0.15 2.54 8.06 -52.49 -0.42 2.12 14
23 H 0.15 2.54 8.06 -52.49 -0.42 2.12 14
LS Contribution 229.45 15.07 3.46 3.46
Total: -1.00 -27.59 229.45 -6.09 -33.69
By element:
Atomic # 1 Polarization: 5.70 SS G_CDS: -1.52 Total: 4.18 kcal
Atomic # 6 Polarization: -6.85 SS G_CDS: -0.69 Total: -7.54 kcal
Atomic # 7 Polarization: -44.61 SS G_CDS: 0.08 Total: -44.53 kcal
Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal
Atomic # 16 Polarization: -0.43 SS G_CDS: -2.38 Total: -2.81 kcal
Total LS contribution 3.46 Total: 3.46 kcal
Total: -27.59 -6.09 -33.69 kcal
The number of atoms in the molecule is 23
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307330310.mol2 23
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 149.263 kcal
(2) G-P(sol) polarization free energy of solvation -27.595 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.668 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.092 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.686 kcal
(6) G-S(sol) free energy of system = (1) + (5) 115.576 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds