Wall clock time and date at job start Mon Mar 30 2020 02:45:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17405 * 1
3 3 C 1.47199 * 179.97438 * 2 1
4 4 N 1.46504 * 109.47140 * 65.92533 * 3 2 1
5 5 C 1.36902 * 119.99799 * 263.88769 * 4 3 2
6 6 H 1.07998 * 119.99632 * 199.91586 * 5 4 3
7 7 C 1.38718 * 120.00216 * 19.91535 * 5 4 3
8 8 N 1.31627 * 119.99803 * 21.96506 * 7 5 4
9 9 Si 1.86795 * 120.00032 * 201.97036 * 7 5 4
10 10 H 1.48502 * 109.47219 * 89.99846 * 9 7 5
11 11 H 1.48504 * 109.46811 * 209.99985 * 9 7 5
12 12 H 1.48493 * 109.47186 * 329.99852 * 9 7 5
13 13 C 1.38179 * 119.99788 * 83.88432 * 4 3 2
14 14 N 1.30116 * 125.47102 * 359.69816 * 13 4 3
15 15 C 1.31626 * 116.99045 * 179.84221 * 14 13 4
16 16 C 1.33520 * 115.83289 * 0.44703 * 15 14 13
17 17 S 1.76178 * 125.46226 * 180.02562 * 13 4 3
18 18 H 4.40646 * 5.51316 * 180.02562 * 4 1 2
19 19 H 1.09004 * 109.46528 * 185.92199 * 3 2 1
20 20 H 1.08998 * 109.47626 * 305.92035 * 3 2 1
21 21 H 0.97002 * 119.99435 * 179.97438 * 8 7 5
22 22 H 1.07996 * 122.08130 * 180.21447 * 15 14 13
23 23 H 1.07998 * 125.87796 * 179.76680 * 16 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1741 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1346 -0.5626 -1.2611
5 6 3.4824 -1.8848 -1.3310
6 1 4.1279 -2.2322 -2.1241
7 6 3.0057 -2.7785 -0.3831
8 7 1.9186 -2.4934 0.3021
9 14 3.9067 -4.3862 -0.0789
10 1 4.9268 -4.1890 0.9822
11 1 2.9360 -5.4233 0.3542
12 1 4.5736 -4.8246 -1.3311
13 6 3.2444 0.2408 -2.3800
14 7 2.9396 1.5046 -2.4349
15 6 3.1128 2.1112 -3.5901
16 6 3.5770 1.3493 -4.5835
17 16 3.8118 -0.2837 -3.9633
18 1 -1.0499 0.0001 -0.0002
19 1 3.0088 1.0231 0.1060
20 1 3.0097 -0.6020 0.8322
21 1 1.5851 -3.1185 0.9646
22 1 2.8897 3.1589 -3.7270
23 1 3.7744 1.6771 -5.5934
RHF calculation, no. of doubly occupied orbitals= 34
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000307330310.mol2 23
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:45:36
Heat of formation + Delta-G solvation = 100.638713 kcal
Electronic energy + Delta-G solvation = -11162.615703 eV
Core-core repulsion = 9104.376438 eV
Total energy + Delta-G solvation = -2058.239265 eV
No. of doubly occupied orbitals = 34
Molecular weight
(most abundant/longest-lived isotopes) = 208.037 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-40.06546 -38.14404 -34.07169 -33.48689 -29.98335 -28.65109 -26.72006 -23.99416
-20.68010 -20.18009 -18.85991 -18.18379 -17.11434 -16.32455 -15.81794 -15.57914
-15.18931 -14.41837 -13.97372 -13.66751 -13.46555 -12.90142 -12.77097 -12.14815
-11.88314 -11.65206 -11.15118 -10.80252 -10.46409 -10.08825 -9.85683 -8.71397
-8.40336 -5.92578 0.40816 0.68265 1.42441 1.46373 1.48450 1.56446
1.99645 2.27047 2.37685 2.43214 2.91524 3.09817 3.86591 4.15619
4.62267 4.76559 4.80454 5.05956 5.25294 5.33897 5.50344 5.91159
6.38704 7.02635 7.06886 7.13083 7.65248 8.50380
Molecular weight = 208.04amu
Principal moments of inertia in cm(-1)
A = 0.032839 B = 0.013709 C = 0.010277
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 852.442636 B = 2041.976359 C = 2723.962071
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.247 4.247
2 C -0.148 4.148
3 C 0.257 3.743
4 N -0.392 5.392
5 C -0.351 4.351
6 H 0.102 0.898
7 C 0.006 3.994
8 N -0.858 5.858
9 Si 0.997 3.003
10 H -0.265 1.265
11 H -0.279 1.279
12 H -0.264 1.264
13 C 0.301 3.699
14 N -0.625 5.625
15 C 0.092 3.908
16 C -0.355 4.355
17 S -0.026 6.026
18 H 0.233 0.767
19 H 0.079 0.921
20 H 0.098 0.902
21 H 0.279 0.721
22 H 0.183 0.817
23 H 0.184 0.816
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.832 1.549 -1.665 2.920
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.266 4.266
2 C -0.150 4.150
3 C 0.133 3.867
4 N -0.088 5.088
5 C -0.480 4.480
6 H 0.119 0.881
7 C -0.201 4.201
8 N -0.491 5.491
9 Si 0.819 3.181
10 H -0.190 1.190
11 H -0.204 1.204
12 H -0.188 1.188
13 C -0.068 4.068
14 N -0.358 5.358
15 C -0.060 4.060
16 C -0.499 4.499
17 S 0.219 5.781
18 H 0.250 0.750
19 H 0.097 0.903
20 H 0.116 0.884
21 H 0.089 0.911
22 H 0.200 0.800
23 H 0.201 0.799
Dipole moment (debyes) X Y Z Total
from point charges 1.867 0.589 -1.242 2.318
hybrid contribution -0.240 0.107 0.027 0.264
sum 1.626 0.696 -1.215 2.146
Atomic orbital electron populations
1.25097 0.96341 1.04804 1.00355 1.23358 0.94966 0.96706 1.00010
1.18114 0.84803 0.97422 0.86375 1.42310 1.55096 1.07312 1.04044
1.19895 1.29306 0.82308 1.16497 0.88077 1.26200 0.94999 1.02719
0.96203 1.70314 1.17284 1.38514 1.22966 0.84869 0.77940 0.76003
0.79292 1.18957 1.20387 1.18765 1.24765 1.00062 0.91267 0.90661
1.66436 1.34435 1.06610 1.28293 1.21481 0.96957 1.01119 0.86432
1.26025 1.24215 0.94275 1.05393 1.84460 1.72025 1.15251 1.06364
0.75022 0.90339 0.88431 0.91110 0.80049 0.79914
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.25 -10.77 19.25 74.32 1.43 -9.34 14
2 C -0.15 -7.15 11.44 31.12 0.36 -6.79 14
3 C 0.26 12.29 5.20 84.57 0.44 12.73 14
4 N -0.39 -19.88 2.68 -529.52 -1.42 -21.29 14
5 C -0.35 -17.79 9.28 84.02 0.78 -17.02 14
6 H 0.10 5.07 7.09 -2.91 -0.02 5.05 14
7 C 0.01 0.30 4.82 84.84 0.41 0.71 14
8 N -0.86 -42.76 9.60 21.63 0.21 -42.56 14
9 Si 1.00 37.96 29.61 68.60 2.03 39.99 14
10 H -0.26 -9.71 7.11 99.48 0.71 -9.00 14
11 H -0.28 -10.45 7.11 99.48 0.71 -9.75 14
12 H -0.26 -9.87 7.11 99.48 0.71 -9.16 14
13 C 0.30 14.81 7.82 179.34 1.40 16.21 14
14 N -0.63 -29.41 9.95 -198.20 -1.97 -31.38 14
15 C 0.09 3.63 11.25 83.65 0.94 4.57 14
16 C -0.36 -13.35 11.34 66.75 0.76 -12.60 14
17 S -0.03 -1.11 22.14 -56.49 -1.25 -2.37 14
18 H 0.23 7.93 7.80 -4.42 -0.03 7.90 14
19 H 0.08 3.56 7.82 -2.38 -0.02 3.54 14
20 H 0.10 4.67 6.62 -2.39 -0.02 4.65 14
21 H 0.28 13.07 8.31 -92.71 -0.77 12.30 14
22 H 0.18 5.69 8.06 -2.91 -0.02 5.67 14
23 H 0.18 5.50 8.06 -2.91 -0.02 5.47 14
Total: -1.00 -57.78 229.45 5.33 -52.45
By element:
Atomic # 1 Polarization: 15.45 SS G_CDS: 1.21 Total: 16.67 kcal
Atomic # 6 Polarization: -18.03 SS G_CDS: 6.52 Total: -11.52 kcal
Atomic # 7 Polarization: -92.05 SS G_CDS: -3.18 Total: -95.23 kcal
Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal
Atomic # 16 Polarization: -1.11 SS G_CDS: -1.25 Total: -2.37 kcal
Total: -57.78 5.33 -52.45 kcal
The number of atoms in the molecule is 23
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307330310.mol2 23
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 153.092 kcal
(2) G-P(sol) polarization free energy of solvation -57.782 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.310 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.329 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.454 kcal
(6) G-S(sol) free energy of system = (1) + (5) 100.639 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds