Wall clock time and date at job start Mon Mar 30 2020 02:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46505 * 119.99966 * 2 1 4 4 C 1.39122 * 120.00180 * 180.02562 * 2 1 3 5 5 C 1.39196 * 119.60557 * 4.99417 * 4 2 1 6 6 C 1.38165 * 119.19487 * 180.02562 * 5 4 2 7 7 C 1.39650 * 118.42733 * 0.02562 * 6 5 4 8 8 N 1.39463 * 120.42338 * 179.97438 * 7 6 5 9 9 C 1.36818 * 119.99828 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00093 * 359.97438 * 9 8 7 11 11 C 1.38753 * 120.00040 * 179.97438 * 9 8 7 12 12 N 1.31630 * 119.99598 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00194 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47007 * 90.00024 * 13 11 9 15 15 H 1.48499 * 109.47248 * 209.99849 * 13 11 9 16 16 H 1.48501 * 109.47231 * 330.00115 * 13 11 9 17 17 C 1.38871 * 119.14927 * 359.97438 * 7 6 5 18 18 N 1.31899 * 120.73141 * 0.02570 * 17 7 6 19 19 H 1.08994 * 109.47135 * 239.99898 * 1 2 3 20 20 H 1.09004 * 109.47295 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47530 * 119.99541 * 1 2 3 22 22 H 1.09000 * 109.47000 * 270.00296 * 3 2 1 23 23 H 1.09004 * 109.46734 * 29.99954 * 3 2 1 24 24 H 1.08995 * 109.47182 * 150.00126 * 3 2 1 25 25 H 1.08005 * 120.40583 * 0.02816 * 5 4 2 26 26 H 1.07998 * 120.78830 * 179.72859 * 6 5 4 27 27 H 0.96994 * 119.99697 * 359.97438 * 8 7 6 28 28 H 0.97003 * 119.99739 * 179.97438 * 12 11 9 29 29 H 1.08005 * 119.63243 * 179.97438 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1607 -1.2048 -0.0005 5 6 1.4604 -2.4031 -0.1064 6 6 2.1598 -3.5947 -0.1056 7 6 3.5513 -3.5488 0.0029 8 7 4.2985 -4.7264 0.0085 9 6 5.6614 -4.6712 0.1146 10 1 6.1587 -3.7157 0.1936 11 6 6.4048 -5.8428 0.1208 12 7 5.7987 -7.0072 0.0241 13 14 8.2656 -5.7675 0.2664 14 1 8.6520 -5.8079 1.6997 15 1 8.8647 -6.9278 -0.4406 16 1 8.7593 -4.5070 -0.3440 17 6 4.1815 -2.3155 0.1049 18 7 3.4807 -1.1981 0.1007 19 1 -0.3633 -0.5138 0.8899 20 1 -0.3634 1.0277 0.0005 21 1 -0.3634 -0.5137 -0.8900 22 1 2.3791 1.5834 -1.0277 23 1 1.6084 2.0284 0.5139 24 1 3.1499 1.1385 0.5138 25 1 0.3835 -2.4016 -0.1883 26 1 1.6422 -4.5395 -0.1820 27 1 3.8519 -5.5844 -0.0627 28 1 6.3184 -7.8263 0.0281 29 1 5.2573 -2.2709 0.1896 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307495136.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:57 Heat of formation + Delta-G solvation = 34.586402 kcal Electronic energy + Delta-G solvation = -12947.548009 eV Core-core repulsion = 10677.243387 eV Total energy + Delta-G solvation = -2270.304622 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.86627 -37.94783 -36.15288 -33.77420 -32.65528 -29.63458 -28.85294 -26.77397 -25.16953 -23.68811 -21.90428 -19.67533 -18.38166 -17.60407 -16.91150 -16.12812 -15.92620 -15.50185 -15.26388 -14.63422 -14.38972 -13.94067 -13.67501 -13.30602 -13.10188 -12.89486 -12.83411 -12.56669 -12.33490 -12.22056 -12.04181 -10.83395 -10.34812 -10.10660 -9.59076 -8.39947 -7.83169 -5.59207 0.61334 0.96927 1.44122 1.50844 1.56099 2.31997 2.42542 3.00898 3.47365 3.52281 3.97337 4.29130 4.33349 4.45762 4.65316 4.68611 4.69785 4.93945 4.99328 5.07174 5.10137 5.31419 5.31988 5.56203 5.72763 6.00915 6.42896 6.79215 6.89498 7.49661 7.64772 7.74849 8.79139 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.065350 B = 0.007077 C = 0.006417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.357367 B = 3955.264140 C = 4362.118136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.640 5.640 3 C 0.110 3.890 4 C 0.279 3.721 5 C -0.161 4.161 6 C -0.161 4.161 7 C 0.111 3.889 8 N -0.591 5.591 9 C -0.309 4.309 10 H 0.100 0.900 11 C -0.034 4.034 12 N -0.936 5.936 13 Si 0.994 3.006 14 H -0.275 1.275 15 H -0.282 1.282 16 H -0.262 1.262 17 C 0.012 3.988 18 N -0.509 5.509 19 H 0.051 0.949 20 H 0.096 0.904 21 H 0.053 0.947 22 H 0.035 0.965 23 H 0.084 0.916 24 H 0.050 0.950 25 H 0.150 0.850 26 H 0.134 0.866 27 H 0.391 0.609 28 H 0.271 0.729 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.434 10.539 -0.034 13.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.362 5.362 3 C -0.034 4.034 4 C 0.044 3.956 5 C -0.186 4.186 6 C -0.193 4.193 7 C -0.006 4.006 8 N -0.201 5.201 9 C -0.439 4.439 10 H 0.118 0.882 11 C -0.232 4.232 12 N -0.577 5.577 13 Si 0.818 3.182 14 H -0.201 1.201 15 H -0.207 1.207 16 H -0.187 1.187 17 C -0.152 4.152 18 N -0.224 5.224 19 H 0.070 0.930 20 H 0.114 0.886 21 H 0.071 0.929 22 H 0.054 0.946 23 H 0.102 0.898 24 H 0.069 0.931 25 H 0.167 0.833 26 H 0.151 0.849 27 H 0.225 0.775 28 H 0.081 0.919 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.739 11.199 0.044 13.613 hybrid contribution 0.446 -1.587 -0.050 1.649 sum -7.293 9.612 -0.006 12.066 Atomic orbital electron populations 1.21651 0.77422 1.03680 1.01035 1.45974 1.05370 1.01962 1.82864 1.21414 0.97117 0.84503 1.00349 1.18227 0.88108 0.87036 1.02229 1.21251 1.00829 0.90489 1.05995 1.20862 0.91389 0.99075 1.07979 1.18993 0.92141 0.88647 1.00844 1.40678 1.05282 1.04022 1.70079 1.19897 0.82515 0.94766 1.46762 0.88245 1.26035 1.04799 0.94261 0.98091 1.69803 1.37984 0.98037 1.51917 0.84884 0.76918 0.78092 0.78322 1.20058 1.20750 1.18667 1.21619 0.98806 0.85963 1.08772 1.66762 1.07520 1.31025 1.17142 0.93046 0.88551 0.92869 0.94622 0.89778 0.93124 0.83260 0.84853 0.77509 0.91949 0.84536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.10 9.40 127.77 1.20 3.30 15 2 N -0.64 -19.01 3.39 -753.78 -2.56 -21.57 15 3 C 0.11 2.83 10.47 127.77 1.34 4.17 15 4 C 0.28 10.58 7.38 133.04 0.98 11.56 15 5 C -0.16 -5.70 9.33 22.48 0.21 -5.49 15 6 C -0.16 -6.42 10.04 22.59 0.23 -6.19 15 7 C 0.11 5.18 6.64 38.42 0.26 5.43 15 8 N -0.59 -30.44 5.44 -183.94 -1.00 -31.44 15 9 C -0.31 -16.60 9.56 84.04 0.80 -15.80 15 10 H 0.10 5.15 5.70 -2.91 -0.02 5.13 15 11 C -0.03 -1.82 5.50 84.85 0.47 -1.35 15 12 N -0.94 -52.33 13.05 21.64 0.28 -52.05 15 13 Si 0.99 42.30 29.55 68.60 2.03 44.33 15 14 H -0.27 -11.44 7.11 99.48 0.71 -10.73 15 15 H -0.28 -11.82 7.11 99.48 0.71 -11.11 15 16 H -0.26 -10.72 7.11 99.48 0.71 -10.01 15 17 C 0.01 0.56 10.47 84.83 0.89 1.45 15 18 N -0.51 -22.02 9.06 -192.50 -1.74 -23.77 15 19 H 0.05 0.99 8.10 -2.39 -0.02 0.97 15 20 H 0.10 1.35 7.79 -2.38 -0.02 1.33 15 21 H 0.05 1.00 7.73 -2.39 -0.02 0.98 15 22 H 0.04 0.89 8.14 -2.39 -0.02 0.87 15 23 H 0.08 1.56 7.92 -2.38 -0.02 1.55 15 24 H 0.05 1.54 7.30 -2.39 -0.02 1.52 15 25 H 0.15 4.12 6.70 -2.91 -0.02 4.10 15 26 H 0.13 4.76 8.06 -2.91 -0.02 4.74 15 27 H 0.39 20.51 7.91 -92.71 -0.73 19.78 15 28 H 0.27 14.37 8.31 -92.71 -0.77 13.60 15 29 H 0.14 6.45 5.96 -2.91 -0.02 6.43 15 Total: -1.00 -62.08 250.25 3.80 -58.27 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: 0.43 Total: 29.14 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 6.37 Total: -2.92 kcal Atomic # 7 Polarization: -123.80 SS G_CDS: -5.02 Total: -128.82 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -62.08 3.80 -58.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307495136.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.860 kcal (2) G-P(sol) polarization free energy of solvation -62.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds