Wall clock time and date at job start Mon Mar 30 2020 02:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47225 * 2 1 4 4 C 1.50702 * 109.46863 * 240.00274 * 2 1 3 5 5 H 1.07998 * 119.99932 * 239.99954 * 4 2 1 6 6 C 1.37884 * 119.99661 * 59.99853 * 4 2 1 7 7 N 1.31508 * 120.00464 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99513 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47482 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47151 * 120.00242 * 8 6 4 11 11 H 1.48502 * 109.46838 * 239.99767 * 8 6 4 12 12 N 1.46500 * 109.47264 * 120.00636 * 2 1 3 13 13 N 1.40101 * 119.99446 * 269.99507 * 12 2 1 14 14 C 1.29700 * 119.99752 * 180.02562 * 13 12 2 15 15 C 1.47587 * 120.00002 * 179.97438 * 14 13 12 16 16 C 1.42048 * 126.49976 * 179.97438 * 15 14 13 17 17 C 1.34543 * 107.33678 * 180.02562 * 16 15 14 18 18 N 1.36453 * 108.61040 * 359.97438 * 17 16 15 19 19 H 0.97001 * 125.47511 * 179.97438 * 18 17 16 20 20 C 1.36181 * 109.04515 * 0.24424 * 18 17 16 21 21 H 1.09001 * 109.46617 * 299.99595 * 1 2 3 22 22 H 1.08994 * 109.46994 * 59.99391 * 1 2 3 23 23 H 1.08994 * 109.47403 * 180.02562 * 1 2 3 24 24 H 0.96992 * 120.00550 * 179.97438 * 7 6 4 25 25 H 0.96999 * 120.00410 * 89.99933 * 12 2 1 26 26 H 1.08006 * 119.99819 * 0.02562 * 14 13 12 27 27 H 1.08004 * 126.33362 * 0.03393 * 16 15 14 28 28 H 1.08001 * 125.69569 * 179.97438 * 17 16 15 29 29 H 1.08001 * 125.99924 * 179.71295 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3211 -1.1202 -4.0081 9 1 3.1462 -2.2869 -3.6041 10 1 1.1658 -1.5864 -4.8162 11 1 3.1463 -0.1871 -4.8166 12 7 2.0184 -0.6907 1.1961 13 7 2.2520 0.0298 2.3747 14 6 2.6848 -0.5816 3.4335 15 6 2.9314 0.1775 4.6749 16 6 3.4020 -0.3486 5.9076 17 6 3.4864 0.6765 6.7749 18 7 3.0908 1.8177 6.1400 19 1 3.0567 2.7011 6.5393 20 6 2.7459 1.5161 4.8576 21 1 -0.3632 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 0.7085 1.1614 -3.4843 25 1 2.1801 -1.6468 1.1720 26 1 2.8655 -1.6461 3.4064 27 1 3.6469 -1.3807 6.1111 28 1 3.8128 0.6077 7.8021 29 1 2.3895 2.2147 4.1151 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308131722.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:57 Heat of formation + Delta-G solvation = 61.895440 kcal Electronic energy + Delta-G solvation = -12540.265136 eV Core-core repulsion = 10271.144723 eV Total energy + Delta-G solvation = -2269.120413 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.67491 -37.92671 -35.82781 -33.44865 -31.68799 -29.95771 -28.22710 -27.26466 -23.91491 -22.23846 -21.28965 -20.08087 -19.06613 -18.36343 -17.15950 -16.88523 -15.53829 -14.97928 -14.49639 -14.41821 -14.38521 -14.02580 -13.46710 -13.30047 -12.96656 -12.85913 -12.64857 -12.41794 -12.21206 -12.06003 -11.10754 -10.77066 -10.58573 -9.89801 -9.12615 -8.22886 -8.08400 -6.33598 0.98872 1.42405 1.42909 1.55461 1.70185 2.27769 2.51651 2.67369 2.70941 3.11730 4.19356 4.41205 4.59324 4.67170 4.81135 4.85789 5.00876 5.13726 5.17841 5.46713 5.49226 5.61396 5.83185 5.90339 6.08651 6.19672 6.31468 6.48111 6.89558 6.92305 7.38394 7.93567 8.88654 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.071877 B = 0.005554 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.458476 B = 5040.404405 C = 5183.410714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.309 3.691 3 H -0.001 1.001 4 C -0.547 4.547 5 H 0.059 0.941 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.971 3.029 9 H -0.268 1.268 10 H -0.275 1.275 11 H -0.279 1.279 12 N -0.652 5.652 13 N -0.264 5.264 14 C 0.069 3.931 15 C -0.143 4.143 16 C -0.205 4.205 17 C -0.003 4.003 18 N -0.547 5.547 19 H 0.431 0.569 20 C 0.005 3.995 21 H 0.016 0.984 22 H 0.069 0.931 23 H 0.028 0.972 24 H 0.267 0.733 25 H 0.369 0.631 26 H 0.108 0.892 27 H 0.149 0.851 28 H 0.205 0.795 29 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.156 -0.086 16.167 16.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.205 3.795 3 H 0.017 0.983 4 C -0.586 4.586 5 H 0.077 0.923 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.796 3.204 9 H -0.192 1.192 10 H -0.201 1.201 11 H -0.205 1.205 12 N -0.389 5.389 13 N -0.073 5.073 14 C -0.142 4.142 15 C -0.152 4.152 16 C -0.231 4.231 17 C -0.133 4.133 18 N -0.143 5.143 19 H 0.271 0.729 20 C -0.132 4.132 21 H 0.035 0.965 22 H 0.087 0.913 23 H 0.048 0.952 24 H 0.076 0.924 25 H 0.206 0.794 26 H 0.125 0.875 27 H 0.167 0.833 28 H 0.221 0.779 29 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.725 1.153 15.535 16.016 hybrid contribution 0.309 -1.139 -0.788 1.419 sum 4.034 0.014 14.746 15.288 Atomic orbital electron populations 1.22020 0.98990 0.98939 0.99528 1.18051 0.90140 0.91466 0.79849 0.98341 1.21585 1.32333 1.13405 0.91320 0.92271 1.25729 0.94904 0.95685 1.01937 1.70020 1.36954 1.23806 1.24594 0.85311 0.78171 0.78435 0.78477 1.19200 1.20062 1.20453 1.48427 1.75958 1.07393 1.07136 1.73943 1.10401 1.28467 0.94451 1.23456 1.02628 0.97123 0.91042 1.18094 1.10838 0.93311 0.92992 1.21157 1.09376 1.00315 0.92252 1.22297 1.06416 0.84544 1.00072 1.41951 1.51631 1.10996 1.09745 0.72910 1.22092 1.06594 0.96728 0.87758 0.96461 0.91264 0.95249 0.92399 0.79448 0.87459 0.83292 0.77853 0.82100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.13 9.29 71.98 0.67 -6.46 15 2 C 0.31 17.01 3.23 44.25 0.14 17.15 15 3 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 15 4 C -0.55 -31.02 8.74 25.60 0.22 -30.80 15 5 H 0.06 3.27 7.79 -2.91 -0.02 3.25 15 6 C 0.02 0.97 5.30 84.66 0.45 1.42 15 7 N -0.92 -53.07 11.32 21.45 0.24 -52.83 15 8 Si 0.97 43.63 29.54 68.60 2.03 45.66 15 9 H -0.27 -11.69 7.11 99.48 0.71 -10.98 15 10 H -0.28 -11.95 7.11 99.48 0.71 -11.24 15 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 15 12 N -0.65 -31.55 6.10 -172.51 -1.05 -32.60 15 13 N -0.26 -11.77 11.24 -52.11 -0.59 -12.36 15 14 C 0.07 2.54 11.02 87.48 0.96 3.50 15 15 C -0.14 -4.47 6.11 -20.30 -0.12 -4.59 15 16 C -0.21 -4.90 10.84 22.37 0.24 -4.65 15 17 C 0.00 -0.05 11.90 83.13 0.99 0.94 15 18 N -0.55 -10.12 6.05 -193.70 -1.17 -11.29 15 19 H 0.43 4.67 8.96 -92.71 -0.83 3.83 15 20 C 0.00 0.14 11.68 83.58 0.98 1.11 15 21 H 0.02 0.83 8.14 -2.39 -0.02 0.81 15 22 H 0.07 3.89 6.07 -2.39 -0.01 3.88 15 23 H 0.03 1.46 8.14 -2.39 -0.02 1.44 15 24 H 0.27 14.48 8.31 -92.71 -0.77 13.71 15 25 H 0.37 16.61 8.58 -213.32 -1.83 14.78 15 26 H 0.11 3.60 8.02 -2.91 -0.02 3.58 15 27 H 0.15 3.00 8.06 -2.91 -0.02 2.97 15 28 H 0.20 1.74 8.06 -2.91 -0.02 1.71 15 29 H 0.16 4.66 8.06 -2.91 -0.02 4.64 15 Total: -1.00 -67.56 260.01 2.49 -65.07 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -1.50 Total: 20.72 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 4.53 Total: -22.37 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -2.57 Total: -109.08 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -67.56 2.49 -65.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308131722.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.968 kcal (2) G-P(sol) polarization free energy of solvation -67.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds