Wall clock time and date at job start Mon Mar 30 2020 02:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09010 * 109.46660 * 2 1 4 4 C 1.50699 * 109.47400 * 119.99648 * 2 1 3 5 5 H 1.07997 * 119.99728 * 85.66040 * 4 2 1 6 6 C 1.37876 * 119.99989 * 265.66432 * 4 2 1 7 7 N 1.31516 * 119.99565 * 177.30882 * 6 4 2 8 8 Si 1.86795 * 120.00342 * 357.31023 * 6 4 2 9 9 H 1.48501 * 109.46989 * 274.92304 * 8 6 4 10 10 H 1.48502 * 109.47174 * 34.92145 * 8 6 4 11 11 H 1.48500 * 109.47093 * 154.91895 * 8 6 4 12 12 N 1.46503 * 109.47469 * 240.00209 * 2 1 3 13 13 N 1.40098 * 120.00106 * 89.99297 * 12 2 1 14 14 C 1.29695 * 120.00218 * 180.02562 * 13 12 2 15 15 C 1.47592 * 120.00105 * 180.02562 * 14 13 12 16 16 C 1.42045 * 126.49606 * 180.02562 * 15 14 13 17 17 C 1.34547 * 107.33347 * 179.97438 * 16 15 14 18 18 N 1.36450 * 108.61062 * 359.97438 * 17 16 15 19 19 H 0.96994 * 125.47940 * 180.02562 * 18 17 16 20 20 C 1.36187 * 109.04510 * 359.73771 * 18 17 16 21 21 H 1.09003 * 109.46748 * 179.03549 * 1 2 3 22 22 H 1.08991 * 109.46982 * 299.03436 * 1 2 3 23 23 H 1.08995 * 109.46854 * 59.03949 * 1 2 3 24 24 H 0.96999 * 119.99638 * 179.97438 * 7 6 4 25 25 H 0.96997 * 119.99362 * 270.00196 * 12 2 1 26 26 H 1.07999 * 119.99600 * 359.97438 * 14 13 12 27 27 H 1.07997 * 126.33435 * 359.97438 * 16 15 14 28 28 H 1.07997 * 125.69604 * 180.02562 * 17 16 15 29 29 H 1.07992 * 125.99709 * 180.28995 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.1457 -1.7843 1.2255 6 6 2.3474 0.0109 2.3625 7 7 2.7352 -0.6134 3.4532 8 14 2.2231 1.8747 2.3473 9 1 3.4804 2.4501 1.8056 10 1 1.0812 2.2877 1.4925 11 1 2.0090 2.3679 3.7315 12 7 2.0185 -0.6906 -1.1962 13 7 2.2519 0.0300 -2.3748 14 6 2.6838 -0.5814 -3.4339 15 6 2.9302 0.1778 -4.6754 16 6 3.3998 -0.3485 -5.9084 17 6 3.4844 0.6768 -6.7755 18 7 3.0887 1.8179 -6.1406 19 1 3.0547 2.7013 -6.5397 20 6 2.7432 1.5160 -4.8583 21 1 -0.3633 -1.0276 -0.0173 22 1 -0.3633 0.4987 0.8984 23 1 -0.3633 0.5287 -0.8812 24 1 2.9571 -0.1059 4.2495 25 1 2.1801 -1.6467 -1.1721 26 1 2.8639 -1.6460 -3.4071 27 1 3.6438 -1.3806 -6.1121 28 1 3.8102 0.6079 -7.8029 29 1 2.3865 2.2145 -4.1159 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308131723.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:58 Heat of formation + Delta-G solvation = 82.712205 kcal Electronic energy + Delta-G solvation = -12598.058051 eV Core-core repulsion = 10329.840320 eV Total energy + Delta-G solvation = -2268.217731 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.70867 -36.31786 -33.92978 -31.89297 -30.65024 -28.92419 -26.92196 -25.19010 -22.50634 -20.56227 -19.94621 -18.91213 -17.95290 -17.00691 -15.53519 -15.00957 -13.99237 -13.70046 -13.49868 -13.13029 -12.73606 -12.50626 -12.23483 -12.09597 -11.82507 -11.07211 -11.05059 -10.72226 -10.31662 -9.87162 -9.39042 -9.08151 -8.77175 -8.62460 -8.11518 -6.61092 -6.18331 -4.20703 2.22193 2.65723 3.27078 3.34601 3.38435 3.46403 3.94152 3.96481 4.35016 5.17850 5.24018 5.43674 5.53100 5.83237 6.02957 6.21450 6.38048 6.53622 6.66022 6.76779 6.87492 7.06390 7.20131 7.29219 7.38998 7.62868 7.71913 8.22379 8.49253 8.85022 9.42257 9.46809 10.94113 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.051334 B = 0.006456 C = 0.006202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.318209 B = 4336.247736 C = 4513.871750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.269 3.731 3 H 0.040 0.960 4 C -0.525 4.525 5 H 0.076 0.924 6 C 0.078 3.922 7 N -0.892 5.892 8 Si 0.879 3.121 9 H -0.274 1.274 10 H -0.261 1.261 11 H -0.287 1.287 12 N -0.632 5.632 13 N -0.224 5.224 14 C 0.041 3.959 15 C -0.100 4.100 16 C -0.185 4.185 17 C -0.026 4.026 18 N -0.564 5.564 19 H 0.412 0.588 20 C 0.009 3.991 21 H 0.044 0.956 22 H 0.051 0.949 23 H 0.026 0.974 24 H 0.267 0.733 25 H 0.370 0.630 26 H 0.098 0.902 27 H 0.135 0.865 28 H 0.160 0.840 29 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.083 4.367 -17.157 17.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.165 3.835 3 H 0.058 0.942 4 C -0.565 4.565 5 H 0.094 0.906 6 C -0.126 4.126 7 N -0.529 5.529 8 Si 0.706 3.294 9 H -0.199 1.199 10 H -0.186 1.186 11 H -0.213 1.213 12 N -0.369 5.369 13 N -0.035 5.035 14 C -0.170 4.170 15 C -0.109 4.109 16 C -0.212 4.212 17 C -0.156 4.156 18 N -0.159 5.159 19 H 0.248 0.752 20 C -0.126 4.126 21 H 0.063 0.937 22 H 0.070 0.930 23 H 0.045 0.955 24 H 0.077 0.923 25 H 0.206 0.794 26 H 0.115 0.885 27 H 0.153 0.847 28 H 0.177 0.823 29 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.208 5.484 -16.433 17.326 hybrid contribution 0.279 0.006 -0.175 0.330 sum 0.072 5.490 -16.609 17.493 Atomic orbital electron populations 1.22357 0.99507 1.00221 0.98962 1.18783 0.89785 0.93623 0.81278 0.94220 1.21077 1.44861 0.95879 0.94641 0.90575 1.24948 0.93718 0.98675 0.95225 1.69888 1.44563 1.36184 1.02284 0.86835 0.79559 0.85782 0.77244 1.19930 1.18595 1.21290 1.48927 1.73855 1.07748 1.06360 1.73857 1.07169 1.28249 0.94202 1.22884 1.06765 0.96282 0.91037 1.17890 1.07925 0.92268 0.92775 1.20894 1.08540 0.98718 0.93020 1.21640 1.09338 0.85744 0.98867 1.41916 1.53229 1.09672 1.11090 0.75240 1.22105 1.06962 0.97196 0.86340 0.93713 0.93025 0.95518 0.92313 0.79363 0.88477 0.84689 0.82268 0.81443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.49 37.16 0.35 -3.03 15 2 C 0.27 6.63 2.84 -69.08 -0.20 6.43 15 3 H 0.04 1.02 5.43 -51.92 -0.28 0.74 15 4 C -0.53 -14.72 9.08 -34.44 -0.31 -15.04 15 5 H 0.08 2.28 8.06 -52.49 -0.42 1.86 15 6 C 0.08 2.24 5.47 -17.82 -0.10 2.14 15 7 N -0.89 -26.89 13.96 55.43 0.77 -26.12 15 8 Si 0.88 21.57 26.77 -169.99 -4.55 17.02 15 9 H -0.27 -6.71 7.11 56.52 0.40 -6.31 15 10 H -0.26 -6.15 6.81 56.52 0.38 -5.76 15 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 15 12 N -0.63 -14.28 6.10 -5.88 -0.04 -14.31 15 13 N -0.22 -4.68 11.24 32.18 0.36 -4.32 15 14 C 0.04 0.73 11.02 -14.64 -0.16 0.57 15 15 C -0.10 -1.57 6.11 -105.30 -0.64 -2.21 15 16 C -0.18 -2.40 10.84 -39.43 -0.43 -2.83 15 17 C -0.03 -0.27 11.90 -16.80 -0.20 -0.47 15 18 N -0.56 -5.88 6.05 -12.58 -0.08 -5.96 15 19 H 0.41 2.80 8.96 -40.82 -0.37 2.44 15 20 C 0.01 0.12 11.68 -16.29 -0.19 -0.07 15 21 H 0.04 0.96 8.14 -51.93 -0.42 0.54 15 22 H 0.05 1.14 7.89 -51.93 -0.41 0.73 15 23 H 0.03 0.55 8.14 -51.93 -0.42 0.13 15 24 H 0.27 7.52 8.31 -40.82 -0.34 7.18 15 25 H 0.37 7.94 8.60 -182.60 -1.57 6.37 15 26 H 0.10 1.61 8.02 -52.49 -0.42 1.19 15 27 H 0.14 1.52 8.06 -52.49 -0.42 1.09 15 28 H 0.16 1.12 8.06 -52.49 -0.42 0.70 15 29 H 0.17 2.29 8.06 -52.49 -0.42 1.86 15 LS Contribution 259.30 15.07 3.91 3.91 Total: -1.00 -31.79 259.30 -6.23 -38.03 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -4.74 Total: 6.27 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -1.88 Total: -14.51 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: 1.02 Total: -50.71 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.55 Total: 17.02 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.79 -6.23 -38.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308131723.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.738 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds