Wall clock time and date at job start Mon Mar 30 2020 02:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09010 * 109.46660 * 2 1 4 4 C 1.50699 * 109.47400 * 119.99648 * 2 1 3 5 5 H 1.07997 * 119.99728 * 85.66040 * 4 2 1 6 6 C 1.37876 * 119.99989 * 265.66432 * 4 2 1 7 7 N 1.31516 * 119.99565 * 177.30882 * 6 4 2 8 8 Si 1.86795 * 120.00342 * 357.31023 * 6 4 2 9 9 H 1.48501 * 109.46989 * 274.92304 * 8 6 4 10 10 H 1.48502 * 109.47174 * 34.92145 * 8 6 4 11 11 H 1.48500 * 109.47093 * 154.91895 * 8 6 4 12 12 N 1.46503 * 109.47469 * 240.00209 * 2 1 3 13 13 N 1.40098 * 120.00106 * 89.99297 * 12 2 1 14 14 C 1.29695 * 120.00218 * 180.02562 * 13 12 2 15 15 C 1.47592 * 120.00105 * 180.02562 * 14 13 12 16 16 C 1.42045 * 126.49606 * 180.02562 * 15 14 13 17 17 C 1.34547 * 107.33347 * 179.97438 * 16 15 14 18 18 N 1.36450 * 108.61062 * 359.97438 * 17 16 15 19 19 H 0.96994 * 125.47940 * 180.02562 * 18 17 16 20 20 C 1.36187 * 109.04510 * 359.73771 * 18 17 16 21 21 H 1.09003 * 109.46748 * 179.03549 * 1 2 3 22 22 H 1.08991 * 109.46982 * 299.03436 * 1 2 3 23 23 H 1.08995 * 109.46854 * 59.03949 * 1 2 3 24 24 H 0.96999 * 119.99638 * 179.97438 * 7 6 4 25 25 H 0.96997 * 119.99362 * 270.00196 * 12 2 1 26 26 H 1.07999 * 119.99600 * 359.97438 * 14 13 12 27 27 H 1.07997 * 126.33435 * 359.97438 * 16 15 14 28 28 H 1.07997 * 125.69604 * 180.02562 * 17 16 15 29 29 H 1.07992 * 125.99709 * 180.28995 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.1457 -1.7843 1.2255 6 6 2.3474 0.0109 2.3625 7 7 2.7352 -0.6134 3.4532 8 14 2.2231 1.8747 2.3473 9 1 3.4804 2.4501 1.8056 10 1 1.0812 2.2877 1.4925 11 1 2.0090 2.3679 3.7315 12 7 2.0185 -0.6906 -1.1962 13 7 2.2519 0.0300 -2.3748 14 6 2.6838 -0.5814 -3.4339 15 6 2.9302 0.1778 -4.6754 16 6 3.3998 -0.3485 -5.9084 17 6 3.4844 0.6768 -6.7755 18 7 3.0887 1.8179 -6.1406 19 1 3.0547 2.7013 -6.5397 20 6 2.7432 1.5160 -4.8583 21 1 -0.3633 -1.0276 -0.0173 22 1 -0.3633 0.4987 0.8984 23 1 -0.3633 0.5287 -0.8812 24 1 2.9571 -0.1059 4.2495 25 1 2.1801 -1.6467 -1.1721 26 1 2.8639 -1.6460 -3.4071 27 1 3.6438 -1.3806 -6.1121 28 1 3.8102 0.6079 -7.8029 29 1 2.3865 2.2145 -4.1159 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308131723.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:58 Heat of formation + Delta-G solvation = 60.214207 kcal Electronic energy + Delta-G solvation = -12599.033637 eV Core-core repulsion = 10329.840320 eV Total energy + Delta-G solvation = -2269.193317 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.67973 -37.97487 -35.72798 -33.80347 -31.91072 -30.10218 -28.34752 -27.25507 -23.88584 -22.04413 -21.30409 -20.16729 -19.21973 -18.70275 -17.16399 -16.91000 -15.51314 -14.99039 -14.63451 -14.53497 -14.40803 -14.11783 -13.89989 -13.42645 -12.97786 -12.91913 -12.69705 -12.64328 -12.13461 -11.82918 -11.24158 -10.85897 -10.77176 -9.91865 -9.13300 -8.36904 -8.14586 -6.44218 0.97248 1.34221 1.35479 1.47398 1.69306 2.28089 2.31316 2.65327 2.69784 3.06244 4.19197 4.37820 4.48300 4.59064 4.68229 4.83114 4.86439 4.92171 5.05867 5.25898 5.42346 5.49958 5.53832 5.78581 6.08070 6.15384 6.29479 6.57216 6.69370 6.91659 7.24634 7.87703 8.79266 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.051334 B = 0.006456 C = 0.006202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.318209 B = 4336.247736 C = 4513.871750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.276 3.724 3 H 0.031 0.969 4 C -0.531 4.531 5 H 0.039 0.961 6 C 0.023 3.977 7 N -0.939 5.939 8 Si 0.942 3.058 9 H -0.273 1.273 10 H -0.243 1.243 11 H -0.278 1.278 12 N -0.652 5.652 13 N -0.262 5.262 14 C 0.073 3.927 15 C -0.144 4.144 16 C -0.206 4.206 17 C -0.003 4.003 18 N -0.547 5.547 19 H 0.432 0.568 20 C 0.008 3.992 21 H 0.044 0.956 22 H 0.050 0.950 23 H 0.042 0.958 24 H 0.270 0.730 25 H 0.368 0.632 26 H 0.106 0.894 27 H 0.147 0.853 28 H 0.203 0.797 29 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.106 6.110 -20.066 20.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.172 3.828 3 H 0.049 0.951 4 C -0.570 4.570 5 H 0.058 0.942 6 C -0.176 4.176 7 N -0.578 5.578 8 Si 0.765 3.235 9 H -0.198 1.198 10 H -0.167 1.167 11 H -0.204 1.204 12 N -0.389 5.389 13 N -0.071 5.071 14 C -0.139 4.139 15 C -0.153 4.153 16 C -0.232 4.232 17 C -0.134 4.134 18 N -0.143 5.143 19 H 0.271 0.729 20 C -0.129 4.129 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.061 0.939 24 H 0.079 0.921 25 H 0.205 0.795 26 H 0.124 0.876 27 H 0.165 0.835 28 H 0.220 0.780 29 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.193 7.245 -19.382 20.692 hybrid contribution 0.362 -0.614 0.444 0.840 sum 0.169 6.631 -18.937 20.065 Atomic orbital electron populations 1.22234 0.97884 1.00531 0.99638 1.18518 0.90909 0.92578 0.80818 0.95075 1.21296 1.44665 0.94506 0.96529 0.94227 1.25795 0.93436 1.03715 0.94682 1.70017 1.46360 1.38233 1.03166 0.85830 0.80101 0.79660 0.77877 1.19801 1.16654 1.20385 1.48519 1.75953 1.07518 1.06905 1.73900 1.10755 1.28143 0.94281 1.23444 1.02289 0.97121 0.91015 1.18069 1.10968 0.93376 0.92885 1.21162 1.09364 1.00271 0.92396 1.22274 1.06475 0.84597 1.00052 1.41958 1.51593 1.10949 1.09848 0.72895 1.22126 1.06401 0.96655 0.87731 0.93694 0.93055 0.93896 0.92050 0.79509 0.87640 0.83481 0.78008 0.81664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.35 9.49 71.98 0.68 -5.67 15 2 C 0.28 13.72 2.84 44.25 0.13 13.85 15 3 H 0.03 1.59 5.43 -2.38 -0.01 1.58 15 4 C -0.53 -30.66 9.08 25.60 0.23 -30.43 15 5 H 0.04 2.50 8.06 -2.91 -0.02 2.48 15 6 C 0.02 1.35 5.47 84.65 0.46 1.81 15 7 N -0.94 -58.17 13.96 21.45 0.30 -57.87 15 8 Si 0.94 44.59 26.77 68.60 1.84 46.43 15 9 H -0.27 -12.77 7.11 99.48 0.71 -12.06 15 10 H -0.24 -10.70 6.81 99.48 0.68 -10.03 15 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 15 12 N -0.65 -29.88 6.10 -172.50 -1.05 -30.94 15 13 N -0.26 -10.90 11.24 -52.11 -0.59 -11.49 15 14 C 0.07 2.55 11.02 87.48 0.96 3.52 15 15 C -0.14 -4.25 6.11 -20.30 -0.12 -4.37 15 16 C -0.21 -4.73 10.84 22.37 0.24 -4.49 15 17 C 0.00 -0.06 11.90 83.13 0.99 0.93 15 18 N -0.55 -9.30 6.05 -193.71 -1.17 -10.48 15 19 H 0.43 4.03 8.96 -92.71 -0.83 3.20 15 20 C 0.01 0.19 11.68 83.58 0.98 1.17 15 21 H 0.04 1.94 8.14 -2.39 -0.02 1.92 15 22 H 0.05 2.22 7.89 -2.39 -0.02 2.21 15 23 H 0.04 1.73 8.14 -2.39 -0.02 1.71 15 24 H 0.27 15.59 8.31 -92.71 -0.77 14.82 15 25 H 0.37 16.37 8.60 -213.32 -1.83 14.54 15 26 H 0.11 3.45 8.02 -2.91 -0.02 3.43 15 27 H 0.15 2.90 8.06 -2.91 -0.02 2.87 15 28 H 0.20 1.60 8.06 -2.91 -0.02 1.58 15 29 H 0.17 4.26 8.06 -2.91 -0.02 4.23 15 Total: -1.00 -69.86 259.30 2.35 -67.52 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -1.53 Total: 20.50 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 4.55 Total: -23.67 kcal Atomic # 7 Polarization: -108.26 SS G_CDS: -2.51 Total: -110.77 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.84 Total: 46.43 kcal Total: -69.86 2.35 -67.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308131723.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.732 kcal (2) G-P(sol) polarization free energy of solvation -69.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds