Wall clock time and date at job start Mon Mar 30 2020 02:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 N 1.40104 * 120.00312 * 89.99780 * 12 2 1 14 14 C 1.29968 * 120.00361 * 179.97438 * 13 12 2 15 15 C 1.46820 * 120.00014 * 180.02562 * 14 13 12 16 16 C 1.36667 * 126.10243 * 180.02562 * 15 14 13 17 17 C 1.40326 * 107.32660 * 179.97438 * 16 15 14 18 18 C 1.35118 * 107.76895 * 359.97438 * 17 16 15 19 19 N 1.36421 * 108.55299 * 359.74129 * 18 17 16 20 20 H 0.97001 * 125.72460 * 180.30328 * 19 18 17 21 21 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 22 22 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 23 23 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 0.97006 * 119.99969 * 270.00430 * 12 2 1 26 26 H 1.08002 * 119.99517 * 0.02562 * 14 13 12 27 27 H 1.08005 * 126.33894 * 359.97438 * 16 15 14 28 28 H 1.07997 * 126.11801 * 179.97438 * 17 16 15 29 29 H 1.07997 * 125.72166 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 7 2.2518 0.0301 -2.3748 14 6 2.6855 -0.5824 -3.4359 15 6 2.9307 0.1730 -4.6708 16 6 3.3838 -0.3417 -5.8531 17 6 3.4748 0.7217 -6.7642 18 6 3.0802 1.8458 -6.1268 19 7 2.7388 1.5216 -4.8463 20 1 2.4167 2.1402 -4.1722 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7089 1.1611 3.4845 25 1 2.1799 -1.6467 -1.1723 26 1 2.8655 -1.6469 -3.4092 27 1 3.6268 -1.3755 -6.0498 28 1 3.8017 0.6537 -7.7913 29 1 3.0375 2.8342 -6.5598 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308140129.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:55 Heat of formation + Delta-G solvation = 59.645372 kcal Electronic energy + Delta-G solvation = -12574.808284 eV Core-core repulsion = 10305.590301 eV Total energy + Delta-G solvation = -2269.217984 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.66563 -38.01769 -35.83638 -33.32949 -31.69319 -30.57414 -28.17696 -27.28808 -23.66055 -22.23996 -21.12898 -20.94391 -19.16722 -17.95996 -17.28981 -16.85978 -15.57714 -15.12779 -14.56164 -14.51928 -14.34805 -14.09033 -13.40236 -13.24928 -12.98236 -12.86626 -12.73058 -12.46581 -12.23274 -12.09908 -11.23021 -10.98917 -10.60529 -9.72291 -9.52041 -8.24859 -8.10157 -6.37447 0.68888 1.41821 1.43627 1.51549 1.96758 2.16638 2.45794 2.49616 2.54391 3.08749 4.09078 4.44627 4.55272 4.66258 4.73613 4.81587 4.95220 5.09053 5.16332 5.41308 5.46831 5.54617 5.72650 5.82799 6.08667 6.21446 6.32418 6.39237 6.78168 6.82171 7.34301 7.74658 8.84710 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.071880 B = 0.005617 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.443552 B = 4983.720371 C = 5126.746136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.308 3.692 3 H 0.000 1.000 4 C -0.551 4.551 5 H 0.061 0.939 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.971 3.029 9 H -0.281 1.281 10 H -0.267 1.267 11 H -0.273 1.273 12 N -0.642 5.642 13 N -0.261 5.261 14 C 0.056 3.944 15 C 0.043 3.957 16 C -0.178 4.178 17 C -0.216 4.216 18 C -0.004 4.004 19 N -0.553 5.553 20 H 0.419 0.581 21 H 0.069 0.931 22 H 0.016 0.984 23 H 0.030 0.970 24 H 0.267 0.733 25 H 0.374 0.626 26 H 0.134 0.866 27 H 0.153 0.847 28 H 0.160 0.840 29 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.497 -0.770 -13.658 14.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.205 3.795 3 H 0.018 0.982 4 C -0.590 4.590 5 H 0.079 0.921 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.795 3.205 9 H -0.206 1.206 10 H -0.192 1.192 11 H -0.198 1.198 12 N -0.379 5.379 13 N -0.071 5.071 14 C -0.155 4.155 15 C -0.071 4.071 16 C -0.207 4.207 17 C -0.240 4.240 18 C -0.138 4.138 19 N -0.148 5.148 20 H 0.256 0.744 21 H 0.088 0.912 22 H 0.036 0.964 23 H 0.049 0.951 24 H 0.077 0.923 25 H 0.211 0.789 26 H 0.151 0.849 27 H 0.170 0.830 28 H 0.177 0.823 29 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 2.996 0.431 -12.805 13.158 hybrid contribution 0.219 -1.161 1.120 1.628 sum 3.215 -0.730 -11.685 12.142 Atomic orbital electron populations 1.22028 0.98846 0.99083 0.99598 1.18090 0.90207 0.91529 0.79715 0.98213 1.21515 1.32638 1.13602 0.91218 0.92052 1.25720 0.94835 0.95639 1.01945 1.70007 1.36797 1.23697 1.24791 0.85421 0.78576 0.78699 0.77782 1.20575 1.19210 1.19816 1.48432 1.75118 1.07642 1.06743 1.73960 1.09620 1.28946 0.94601 1.23354 1.04142 0.97937 0.90024 1.18524 1.10698 0.83740 0.94102 1.21240 1.07188 1.00559 0.91667 1.21123 1.09868 0.91992 1.01001 1.22582 1.05735 1.01575 0.83916 1.42377 1.51683 1.08069 1.12710 0.74407 0.91224 0.96448 0.95100 0.92346 0.78884 0.84879 0.82978 0.82281 0.78739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.91 9.29 71.98 0.67 -6.24 15 2 C 0.31 16.29 3.23 44.24 0.14 16.43 15 3 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 15 4 C -0.55 -30.20 8.74 25.60 0.22 -29.97 15 5 H 0.06 3.26 7.79 -2.91 -0.02 3.23 15 6 C 0.02 1.03 5.30 84.66 0.45 1.48 15 7 N -0.91 -51.93 11.32 21.45 0.24 -51.69 15 8 Si 0.97 42.60 29.54 68.60 2.03 44.63 15 9 H -0.28 -12.00 7.11 99.48 0.71 -11.30 15 10 H -0.27 -11.29 7.11 99.48 0.71 -10.59 15 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 12 N -0.64 -29.19 6.10 -172.53 -1.05 -30.24 15 13 N -0.26 -10.80 11.47 -52.56 -0.60 -11.41 15 14 C 0.06 1.89 10.96 87.22 0.96 2.84 15 15 C 0.04 1.30 7.01 40.16 0.28 1.58 15 16 C -0.18 -4.48 10.81 22.41 0.24 -4.24 15 17 C -0.22 -4.65 10.82 22.06 0.24 -4.41 15 18 C 0.00 -0.09 11.93 83.26 0.99 0.90 15 19 N -0.55 -14.87 6.10 -184.17 -1.12 -15.99 15 20 H 0.42 11.11 8.96 -92.71 -0.83 10.28 15 21 H 0.07 3.80 6.07 -2.39 -0.01 3.79 15 22 H 0.02 0.80 8.14 -2.38 -0.02 0.78 15 23 H 0.03 1.48 8.14 -2.39 -0.02 1.46 15 24 H 0.27 14.32 8.31 -92.71 -0.77 13.55 15 25 H 0.37 15.66 8.58 -213.31 -1.83 13.83 15 26 H 0.13 3.90 8.03 -2.91 -0.02 3.88 15 27 H 0.15 3.17 8.06 -2.91 -0.02 3.14 15 28 H 0.16 2.53 8.06 -2.91 -0.02 2.51 15 29 H 0.20 2.60 8.06 -2.91 -0.02 2.57 15 Total: -1.00 -62.45 260.29 2.18 -60.27 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: -1.50 Total: 26.07 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: 4.20 Total: -21.63 kcal Atomic # 7 Polarization: -106.79 SS G_CDS: -2.54 Total: -109.33 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -62.45 2.18 -60.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308140129.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.911 kcal (2) G-P(sol) polarization free energy of solvation -62.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds