Wall clock time and date at job start Mon Mar 30 2020 02:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31854 * 1 3 3 N 1.39529 * 119.99858 * 2 1 4 4 C 1.35823 * 126.10055 * 180.27894 * 3 2 1 5 5 C 1.35321 * 107.61869 * 179.97438 * 4 3 2 6 6 C 1.50696 * 126.01783 * 179.97438 * 5 4 3 7 7 N 1.46496 * 109.47279 * 89.99685 * 6 5 4 8 8 C 1.46501 * 120.00171 * 270.00508 * 7 6 5 9 9 C 1.36942 * 119.99850 * 89.99958 * 7 6 5 10 10 H 1.08001 * 119.99798 * 20.38170 * 9 7 6 11 11 C 1.38814 * 120.00111 * 200.38149 * 9 7 6 12 12 N 1.31623 * 119.99985 * 14.97371 * 11 9 7 13 13 Si 1.86797 * 120.00141 * 194.98200 * 11 9 7 14 14 H 1.48504 * 109.47295 * 84.99775 * 13 11 9 15 15 H 1.48502 * 109.47096 * 205.00104 * 13 11 9 16 16 H 1.48501 * 109.46837 * 324.99929 * 13 11 9 17 17 C 1.39922 * 107.96584 * 359.97438 * 5 4 3 18 18 N 1.30860 * 108.36745 * 359.71911 * 17 5 4 19 19 H 1.08006 * 120.00196 * 179.73360 * 1 2 3 20 20 H 1.08000 * 120.00443 * 359.73006 * 1 2 3 21 21 H 1.08002 * 119.99950 * 180.26793 * 2 1 3 22 22 H 1.08002 * 126.19166 * 359.97438 * 4 3 2 23 23 H 1.08996 * 109.47317 * 209.99998 * 6 5 4 24 24 H 1.08998 * 109.47166 * 329.99621 * 6 5 4 25 25 H 1.08991 * 109.47350 * 95.09534 * 8 7 6 26 26 H 1.09008 * 109.46944 * 215.09362 * 8 7 6 27 27 H 1.08999 * 109.46734 * 335.09066 * 8 7 6 28 28 H 0.96995 * 120.00054 * 179.97438 * 12 11 9 29 29 H 1.08002 * 125.81030 * 180.02562 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3185 0.0000 0.0000 3 7 2.0162 1.2084 0.0000 4 6 3.3667 1.3528 -0.0053 5 6 3.6369 2.6787 -0.0038 6 6 5.0081 3.3037 -0.0078 7 7 5.4474 3.5088 -1.3902 8 6 6.1931 2.4568 -2.0856 9 6 5.1608 4.6838 -2.0325 10 1 4.9182 5.5669 -1.4600 11 6 5.1822 4.7398 -3.4193 12 7 5.1831 3.6275 -4.1230 13 14 5.2099 6.3939 -4.2869 14 1 6.6107 6.8766 -4.3878 15 1 4.6373 6.2479 -5.6493 16 1 4.4038 7.3721 -3.5134 17 6 2.4188 3.3674 0.0020 18 7 1.4486 2.4892 -0.0021 19 1 -0.5401 -0.9353 -0.0043 20 1 -0.5401 0.9353 0.0044 21 1 1.8585 -0.9353 -0.0044 22 1 4.0934 0.5539 -0.0100 23 1 4.9716 4.2632 0.5080 24 1 5.7097 2.6436 0.5023 25 1 5.5034 1.8490 -2.6712 26 1 6.9297 2.9111 -2.7484 27 1 6.7011 1.8278 -1.3546 28 1 5.1976 3.6667 -5.0920 29 1 2.2998 4.4408 0.0041 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308325051.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:21 Heat of formation + Delta-G solvation = 129.560212 kcal Electronic energy + Delta-G solvation = -13215.016392 eV Core-core repulsion = 10948.830144 eV Total energy + Delta-G solvation = -2266.186249 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.70629 -35.68200 -34.27947 -31.52600 -30.02038 -29.16732 -25.96079 -25.16304 -22.61868 -21.35382 -19.93198 -18.75690 -16.92944 -16.60103 -14.85394 -14.50592 -14.01414 -13.92597 -13.46663 -13.18452 -12.75904 -12.23026 -11.93716 -11.62299 -10.97275 -10.87781 -10.68502 -10.56579 -10.34545 -10.04463 -9.82903 -9.81748 -8.57862 -8.49455 -7.60415 -6.73989 -5.67983 -3.10344 1.65327 2.98837 3.14807 3.40115 3.45328 3.48941 3.51242 4.56810 4.84905 5.26249 5.43328 5.49895 5.79416 5.84067 6.02027 6.02670 6.31778 6.48733 6.57254 6.71691 6.76486 6.90312 7.26313 7.40768 7.73481 7.76183 7.85240 8.22180 8.43399 9.27882 9.92034 10.40118 11.37339 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.041293 B = 0.008690 C = 0.008323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.913485 B = 3221.371368 C = 3363.442090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.089 3.911 3 N -0.343 5.343 4 C 0.036 3.964 5 C -0.207 4.207 6 C 0.214 3.786 7 N -0.594 5.594 8 C 0.164 3.836 9 C -0.250 4.250 10 H 0.071 0.929 11 C 0.000 4.000 12 N -0.907 5.907 13 Si 0.903 3.097 14 H -0.288 1.288 15 H -0.293 1.293 16 H -0.280 1.280 17 C 0.076 3.924 18 N -0.308 5.308 19 H 0.116 0.884 20 H 0.111 0.889 21 H 0.150 0.850 22 H 0.167 0.833 23 H 0.055 0.945 24 H 0.046 0.954 25 H 0.026 0.974 26 H 0.043 0.957 27 H -0.003 1.003 28 H 0.251 0.749 29 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.314 -5.933 8.281 10.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.022 4.022 3 N -0.122 5.122 4 C -0.105 4.105 5 C -0.220 4.220 6 C 0.085 3.915 7 N -0.315 5.315 8 C 0.019 3.981 9 C -0.380 4.380 10 H 0.089 0.911 11 C -0.198 4.198 12 N -0.553 5.553 13 Si 0.733 3.267 14 H -0.215 1.215 15 H -0.219 1.219 16 H -0.205 1.205 17 C -0.111 4.111 18 N -0.128 5.128 19 H 0.134 0.866 20 H 0.129 0.871 21 H 0.167 0.833 22 H 0.184 0.816 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.045 0.955 26 H 0.062 0.938 27 H 0.016 0.984 28 H 0.061 0.939 29 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -4.524 -6.202 8.076 11.142 hybrid contribution 0.702 0.788 -0.891 1.381 sum -3.822 -5.414 7.185 9.775 Atomic orbital electron populations 1.23830 0.94562 1.03223 1.05237 1.21137 0.93792 0.85563 1.01711 1.46046 1.04470 1.04476 1.57169 1.22425 0.84668 0.98687 1.04710 1.21618 0.99184 0.92062 1.09156 1.19313 0.87366 0.97114 0.87659 1.44151 1.61064 1.16220 1.10055 1.20780 0.94370 0.89961 0.92964 1.19230 1.42451 0.87213 0.89062 0.91139 1.24980 1.01341 0.96726 0.96735 1.70089 1.54841 1.25074 1.05249 0.86289 0.77710 0.83713 0.78951 1.21500 1.21901 1.20515 1.23861 0.90364 0.99482 0.97428 1.77235 1.22718 0.87231 1.25568 0.86599 0.87088 0.83260 0.81579 0.92671 0.93598 0.95542 0.93789 0.98424 0.93873 0.80237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -2.96 14.35 28.83 0.41 -2.55 15 2 C 0.09 1.27 10.78 -15.94 -0.17 1.09 15 3 N -0.34 -6.24 3.80 -12.74 -0.05 -6.29 15 4 C 0.04 0.65 11.38 -16.82 -0.19 0.46 15 5 C -0.21 -4.14 5.68 -105.03 -0.60 -4.74 15 6 C 0.21 4.35 6.19 -5.20 -0.03 4.32 15 7 N -0.59 -14.86 2.91 -182.51 -0.53 -15.39 15 8 C 0.16 4.04 9.02 59.85 0.54 4.58 15 9 C -0.25 -6.84 9.68 -15.06 -0.15 -6.99 15 10 H 0.07 1.87 7.86 -52.49 -0.41 1.45 15 11 C 0.00 0.01 5.06 -17.43 -0.09 -0.08 15 12 N -0.91 -26.95 10.67 55.49 0.59 -26.36 15 13 Si 0.90 22.11 29.58 -169.99 -5.03 17.08 15 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 15 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 15 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 17 C 0.08 1.53 11.95 -17.34 -0.21 1.32 15 18 N -0.31 -6.21 11.73 30.64 0.36 -5.85 15 19 H 0.12 1.12 8.06 -52.48 -0.42 0.69 15 20 H 0.11 1.67 7.54 -52.49 -0.40 1.27 15 21 H 0.15 1.56 8.06 -52.49 -0.42 1.13 15 22 H 0.17 2.50 8.06 -52.49 -0.42 2.08 15 23 H 0.05 1.07 8.03 -51.93 -0.42 0.65 15 24 H 0.05 0.83 7.86 -51.93 -0.41 0.42 15 25 H 0.03 0.71 7.40 -51.93 -0.38 0.33 15 26 H 0.04 1.16 7.21 -51.92 -0.37 0.79 15 27 H 0.00 -0.06 7.83 -51.93 -0.41 -0.47 15 28 H 0.25 7.27 8.31 -40.82 -0.34 6.93 15 29 H 0.18 3.25 8.06 -52.49 -0.42 2.83 15 LS Contribution 258.37 15.07 3.89 3.89 Total: -1.00 -32.27 258.37 -4.87 -37.14 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -3.63 Total: -1.64 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -0.48 Total: -2.58 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.37 Total: -53.90 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -32.27 -4.87 -37.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308325051.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.701 kcal (2) G-P(sol) polarization free energy of solvation -32.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds