Wall clock time and date at job start Mon Mar 30 2020 02:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31854 * 1 3 3 N 1.39529 * 119.99858 * 2 1 4 4 C 1.35823 * 126.10055 * 180.27894 * 3 2 1 5 5 C 1.35321 * 107.61869 * 179.97438 * 4 3 2 6 6 C 1.50696 * 126.01783 * 179.97438 * 5 4 3 7 7 N 1.46496 * 109.47279 * 89.99685 * 6 5 4 8 8 C 1.46501 * 120.00171 * 270.00508 * 7 6 5 9 9 C 1.36942 * 119.99850 * 89.99958 * 7 6 5 10 10 H 1.08001 * 119.99798 * 20.38170 * 9 7 6 11 11 C 1.38814 * 120.00111 * 200.38149 * 9 7 6 12 12 N 1.31623 * 119.99985 * 14.97371 * 11 9 7 13 13 Si 1.86797 * 120.00141 * 194.98200 * 11 9 7 14 14 H 1.48504 * 109.47295 * 84.99775 * 13 11 9 15 15 H 1.48502 * 109.47096 * 205.00104 * 13 11 9 16 16 H 1.48501 * 109.46837 * 324.99929 * 13 11 9 17 17 C 1.39922 * 107.96584 * 359.97438 * 5 4 3 18 18 N 1.30860 * 108.36745 * 359.71911 * 17 5 4 19 19 H 1.08006 * 120.00196 * 179.73360 * 1 2 3 20 20 H 1.08000 * 120.00443 * 359.73006 * 1 2 3 21 21 H 1.08002 * 119.99950 * 180.26793 * 2 1 3 22 22 H 1.08002 * 126.19166 * 359.97438 * 4 3 2 23 23 H 1.08996 * 109.47317 * 209.99998 * 6 5 4 24 24 H 1.08998 * 109.47166 * 329.99621 * 6 5 4 25 25 H 1.08991 * 109.47350 * 95.09534 * 8 7 6 26 26 H 1.09008 * 109.46944 * 215.09362 * 8 7 6 27 27 H 1.08999 * 109.46734 * 335.09066 * 8 7 6 28 28 H 0.96995 * 120.00054 * 179.97438 * 12 11 9 29 29 H 1.08002 * 125.81030 * 180.02562 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3185 0.0000 0.0000 3 7 2.0162 1.2084 0.0000 4 6 3.3667 1.3528 -0.0053 5 6 3.6369 2.6787 -0.0038 6 6 5.0081 3.3037 -0.0078 7 7 5.4474 3.5088 -1.3902 8 6 6.1931 2.4568 -2.0856 9 6 5.1608 4.6838 -2.0325 10 1 4.9182 5.5669 -1.4600 11 6 5.1822 4.7398 -3.4193 12 7 5.1831 3.6275 -4.1230 13 14 5.2099 6.3939 -4.2869 14 1 6.6107 6.8766 -4.3878 15 1 4.6373 6.2479 -5.6493 16 1 4.4038 7.3721 -3.5134 17 6 2.4188 3.3674 0.0020 18 7 1.4486 2.4892 -0.0021 19 1 -0.5401 -0.9353 -0.0043 20 1 -0.5401 0.9353 0.0044 21 1 1.8585 -0.9353 -0.0044 22 1 4.0934 0.5539 -0.0100 23 1 4.9716 4.2632 0.5080 24 1 5.7097 2.6436 0.5023 25 1 5.5034 1.8490 -2.6712 26 1 6.9297 2.9111 -2.7484 27 1 6.7011 1.8278 -1.3546 28 1 5.1976 3.6667 -5.0920 29 1 2.2998 4.4408 0.0041 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308325051.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:20 Heat of formation + Delta-G solvation = 109.550972 kcal Electronic energy + Delta-G solvation = -13215.884058 eV Core-core repulsion = 10948.830144 eV Total energy + Delta-G solvation = -2267.053914 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.11955 -37.47986 -35.60849 -33.42584 -31.45255 -30.72027 -27.91340 -26.88291 -23.94953 -23.20525 -21.35322 -20.11752 -18.63387 -18.17621 -16.77725 -16.00495 -15.48584 -15.35280 -15.18164 -14.95943 -14.27989 -13.78763 -13.41041 -13.03006 -12.80931 -12.78578 -12.47594 -12.25946 -11.97201 -11.87417 -11.69309 -11.37449 -10.58751 -9.94737 -9.01443 -8.71769 -7.77693 -5.21296 0.40160 1.48400 1.48910 1.56904 1.73442 1.87993 1.97788 2.57371 3.37248 3.70265 3.97209 4.04677 4.19588 4.52947 4.63667 4.81621 4.91049 4.97197 5.09978 5.21277 5.37521 5.41936 5.49271 5.68318 5.77933 5.83629 6.37674 6.48855 6.78935 7.21483 7.95489 8.37168 9.26071 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.041293 B = 0.008690 C = 0.008323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.913485 B = 3221.371368 C = 3363.442090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.057 3.943 3 N -0.344 5.344 4 C 0.048 3.952 5 C -0.236 4.236 6 C 0.216 3.784 7 N -0.610 5.610 8 C 0.178 3.822 9 C -0.249 4.249 10 H 0.076 0.924 11 C -0.058 4.058 12 N -0.942 5.942 13 Si 0.962 3.038 14 H -0.284 1.284 15 H -0.302 1.302 16 H -0.268 1.268 17 C 0.057 3.943 18 N -0.335 5.335 19 H 0.156 0.844 20 H 0.086 0.914 21 H 0.192 0.808 22 H 0.200 0.800 23 H 0.060 0.940 24 H 0.074 0.926 25 H -0.004 1.004 26 H 0.014 0.986 27 H 0.038 0.962 28 H 0.243 0.757 29 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.504 -6.978 9.394 12.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.051 4.051 3 N -0.123 5.123 4 C -0.095 4.095 5 C -0.249 4.249 6 C 0.089 3.911 7 N -0.332 5.332 8 C 0.033 3.967 9 C -0.380 4.380 10 H 0.093 0.907 11 C -0.252 4.252 12 N -0.590 5.590 13 Si 0.791 3.209 14 H -0.211 1.211 15 H -0.229 1.229 16 H -0.193 1.193 17 C -0.129 4.129 18 N -0.156 5.156 19 H 0.174 0.826 20 H 0.104 0.896 21 H 0.209 0.791 22 H 0.217 0.783 23 H 0.078 0.922 24 H 0.092 0.908 25 H 0.014 0.986 26 H 0.033 0.967 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -4.748 -7.247 9.241 12.667 hybrid contribution 0.651 0.993 -1.107 1.623 sum -4.097 -6.254 8.134 11.048 Atomic orbital electron populations 1.24141 0.94428 1.03983 1.02418 1.21928 0.94598 0.85458 1.03156 1.46385 1.04850 1.04947 1.56137 1.22923 0.85289 0.98961 1.02292 1.21534 0.98689 0.93031 1.11638 1.19409 0.88233 0.98253 0.85211 1.44380 1.61678 1.15708 1.11418 1.20519 0.93150 0.89720 0.93273 1.19587 1.40508 0.88510 0.89362 0.90672 1.25685 1.02320 0.99570 0.97605 1.70262 1.57119 1.26840 1.04752 0.85342 0.77707 0.80463 0.77349 1.21128 1.22911 1.19326 1.24055 0.90763 1.00047 0.98053 1.77158 1.23420 0.88389 1.26620 0.82585 0.89561 0.79119 0.78335 0.92153 0.90808 0.98562 0.96696 0.94373 0.94759 0.79785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.87 14.35 67.01 0.96 -3.91 15 2 C 0.06 1.46 10.78 82.66 0.89 2.35 15 3 N -0.34 -11.91 3.80 -194.21 -0.74 -12.65 15 4 C 0.05 1.62 11.38 83.40 0.95 2.57 15 5 C -0.24 -9.14 5.68 -20.13 -0.11 -9.25 15 6 C 0.22 8.39 6.19 85.63 0.53 8.92 15 7 N -0.61 -30.03 2.91 -731.33 -2.13 -32.16 15 8 C 0.18 8.68 9.02 127.77 1.15 9.84 15 9 C -0.25 -13.58 9.68 84.03 0.81 -12.77 15 10 H 0.08 3.93 7.86 -2.91 -0.02 3.91 15 11 C -0.06 -3.27 5.06 84.86 0.43 -2.84 15 12 N -0.94 -57.06 10.67 21.65 0.23 -56.83 15 13 Si 0.96 45.89 29.58 68.60 2.03 47.92 15 14 H -0.28 -13.26 7.11 99.48 0.71 -12.55 15 15 H -0.30 -14.74 7.11 99.48 0.71 -14.04 15 16 H -0.27 -12.15 7.11 99.48 0.71 -11.44 15 17 C 0.06 2.28 11.95 85.25 1.02 3.30 15 18 N -0.34 -13.38 11.73 -56.98 -0.67 -14.05 15 19 H 0.16 2.33 8.06 -2.91 -0.02 2.31 15 20 H 0.09 2.48 7.54 -2.91 -0.02 2.46 15 21 H 0.19 3.13 8.06 -2.91 -0.02 3.11 15 22 H 0.20 5.24 8.06 -2.91 -0.02 5.21 15 23 H 0.06 2.25 8.03 -2.39 -0.02 2.23 15 24 H 0.07 2.43 7.86 -2.39 -0.02 2.41 15 25 H 0.00 -0.21 7.40 -2.39 -0.02 -0.23 15 26 H 0.01 0.77 7.21 -2.38 -0.02 0.75 15 27 H 0.04 1.51 7.83 -2.39 -0.02 1.49 15 28 H 0.24 14.47 8.31 -92.71 -0.77 13.70 15 29 H 0.19 6.78 8.06 -2.91 -0.02 6.76 15 Total: -1.00 -69.95 258.37 6.48 -63.47 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: 1.12 Total: 6.08 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 6.63 Total: -1.78 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -3.30 Total: -115.68 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -69.95 6.48 -63.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308325051.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.019 kcal (2) G-P(sol) polarization free energy of solvation -69.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds