Wall clock time and date at job start Mon Mar 30 2020 02:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46895 * 109.47422 * 335.45800 * 3 2 1 5 5 C 1.46898 * 111.00033 * 62.26157 * 4 3 2 6 6 C 1.50697 * 109.47250 * 199.72010 * 5 4 3 7 7 H 1.08004 * 120.00323 * 5.02526 * 6 5 4 8 8 C 1.37876 * 120.00305 * 185.02275 * 6 5 4 9 9 N 1.31519 * 119.99697 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00398 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46983 * 60.00302 * 10 8 6 12 12 H 1.48505 * 109.47389 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47331 * 299.99931 * 10 8 6 14 14 C 1.46898 * 111.00341 * 186.21576 * 4 3 2 15 15 C 1.52997 * 109.47385 * 66.04500 * 14 4 3 16 16 C 1.53782 * 113.61704 * 274.14170 * 15 14 4 17 17 C 1.53951 * 87.01977 * 220.04584 * 16 15 14 18 18 C 1.53777 * 113.61633 * 176.53399 * 15 14 4 19 19 H 4.40884 * 5.52161 * 180.02562 * 4 1 2 20 20 H 1.09004 * 109.47056 * 215.45724 * 3 2 1 21 21 H 1.08995 * 109.46932 * 95.45955 * 3 2 1 22 22 H 1.09008 * 109.47033 * 319.71912 * 5 4 3 23 23 H 1.08995 * 109.47481 * 79.71618 * 5 4 3 24 24 H 0.97000 * 119.99687 * 179.97438 * 9 8 6 25 25 H 1.09003 * 109.47452 * 186.04907 * 14 4 3 26 26 H 1.09003 * 109.46677 * 306.04806 * 14 4 3 27 27 H 1.09003 * 112.85199 * 45.33261 * 15 14 4 28 28 H 1.09010 * 113.61109 * 334.56832 * 16 15 14 29 29 H 1.09001 * 113.61737 * 105.46204 * 16 15 14 30 30 H 1.08995 * 113.53471 * 270.80498 * 17 16 15 31 31 H 1.09006 * 113.66508 * 139.93074 * 17 16 15 32 32 H 1.09007 * 113.61338 * 254.52485 * 18 15 14 33 33 H 1.08995 * 113.61488 * 25.34597 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1363 -1.2589 0.5752 5 6 2.7105 -2.4083 -0.2344 6 6 2.7919 -3.6643 0.5945 7 1 3.0479 -3.6044 1.6420 8 6 2.5394 -4.8899 0.0156 9 7 2.2280 -4.9629 -1.2601 10 14 2.6409 -6.4468 1.0428 11 1 1.6634 -6.3686 2.1579 12 1 2.3284 -7.6228 0.1915 13 1 4.0121 -6.5868 1.5953 14 6 4.5971 -1.2347 0.7277 15 6 4.9838 -0.1837 1.7701 16 6 5.1308 1.2334 1.1911 17 6 6.3556 1.3948 2.1097 18 6 6.4919 -0.1364 2.0672 19 1 -1.0498 -0.0004 0.0000 20 1 3.0090 0.8379 0.5962 21 1 3.0092 0.0986 -1.0230 22 1 1.6832 -2.2582 -0.5666 23 1 3.3629 -2.5030 -1.1024 24 1 2.0507 -5.8252 -1.6675 25 1 4.9448 -2.2150 1.0538 26 1 5.0580 -0.9852 -0.2281 27 1 4.3635 -0.2273 2.6654 28 1 5.3764 1.2478 0.1292 29 1 4.3035 1.8965 1.4442 30 1 6.1104 1.7842 3.0977 31 1 7.1878 1.9203 1.6411 32 1 6.7619 -0.5774 3.0268 33 1 7.1102 -0.4985 1.2459 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308337604.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:45 Heat of formation + Delta-G solvation = 72.833981 kcal Electronic energy + Delta-G solvation = -13403.856854 eV Core-core repulsion = 11238.751114 eV Total energy + Delta-G solvation = -2165.105739 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.95664 -36.22003 -32.76124 -31.98557 -28.13850 -27.62763 -25.37461 -24.53358 -22.35043 -20.39716 -19.11692 -17.43465 -16.46414 -15.56114 -14.95079 -14.60579 -14.09365 -13.92517 -13.40164 -12.30208 -12.26736 -12.16892 -12.07974 -11.59423 -11.55822 -10.97558 -10.77458 -10.56590 -10.25754 -10.11711 -9.84527 -9.83808 -9.64798 -9.33450 -9.17029 -8.36857 -7.26219 -5.97641 -3.98740 3.36063 3.38124 3.39936 3.44194 3.48304 4.46845 4.80900 4.88792 4.93476 5.00329 5.11935 5.37143 5.39083 5.75803 5.90591 5.92495 5.95443 6.03282 6.03853 6.06705 6.16687 6.34598 6.47348 6.54043 6.68056 6.85218 7.31639 7.37127 7.85565 8.12276 8.20922 8.29636 8.56956 9.09242 9.64846 11.12900 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.026105 B = 0.009587 C = 0.007494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.343158 B = 2920.055593 C = 3735.241287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.155 4.155 3 C 0.151 3.849 4 N -0.531 5.531 5 C 0.189 3.811 6 C -0.503 4.503 7 H 0.063 0.937 8 C 0.054 3.946 9 N -0.900 5.900 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.074 3.926 15 C -0.104 4.104 16 C -0.143 4.143 17 C -0.142 4.142 18 C -0.137 4.137 19 H 0.211 0.789 20 H 0.091 0.909 21 H 0.042 0.958 22 H 0.031 0.969 23 H -0.004 1.004 24 H 0.261 0.739 25 H 0.086 0.914 26 H 0.022 0.978 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.058 10.801 3.978 12.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.155 4.155 3 C 0.024 3.976 4 N -0.256 5.256 5 C 0.064 3.936 6 C -0.542 4.542 7 H 0.081 0.919 8 C -0.147 4.147 9 N -0.540 5.540 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.054 4.054 15 C -0.123 4.123 16 C -0.180 4.180 17 C -0.179 4.179 18 C -0.175 4.175 19 H 0.228 0.772 20 H 0.109 0.891 21 H 0.059 0.941 22 H 0.049 0.951 23 H 0.014 0.986 24 H 0.070 0.930 25 H 0.104 0.896 26 H 0.040 0.960 27 H 0.113 0.887 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.825 10.601 4.291 12.412 hybrid contribution 0.092 -0.900 -0.411 0.993 sum 4.917 9.701 3.879 11.547 Atomic orbital electron populations 1.24653 0.95728 1.01599 1.02481 1.23014 0.94408 0.99166 0.98923 1.19227 0.84887 0.95443 0.98008 1.62182 1.10115 1.01617 1.51671 1.19805 0.95773 0.86690 0.91294 1.21127 1.46334 0.90252 0.96445 0.91896 1.24996 0.95593 0.99146 0.94976 1.69960 1.47996 1.25130 1.10935 0.86569 0.78541 0.82311 0.80027 1.20216 1.21408 1.20274 1.21984 0.88175 0.99453 0.95743 1.22626 0.95621 0.94284 0.99754 1.23143 0.97763 0.97867 0.99252 1.22828 0.98382 0.96816 0.99920 1.22900 0.97096 0.95804 1.01667 0.77180 0.89126 0.94057 0.95101 0.98633 0.92953 0.89596 0.95970 0.88667 0.90452 0.91684 0.90574 0.92051 0.91742 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.13 19.25 29.55 0.57 -3.56 16 2 C -0.15 -3.10 12.03 -37.12 -0.45 -3.55 16 3 C 0.15 2.88 5.06 -6.62 -0.03 2.85 16 4 N -0.53 -11.70 4.43 -239.60 -1.06 -12.77 16 5 C 0.19 5.08 4.62 -4.98 -0.02 5.05 16 6 C -0.50 -14.47 8.56 -34.44 -0.29 -14.76 16 7 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 8 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 10 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 14 C 0.07 1.42 4.70 -3.83 -0.02 1.40 16 15 C -0.10 -1.57 3.50 -89.81 -0.31 -1.89 16 16 C -0.14 -1.83 5.80 -25.83 -0.15 -1.98 16 17 C -0.14 -1.60 8.09 -25.83 -0.21 -1.81 16 18 C -0.14 -1.74 7.65 -25.92 -0.20 -1.94 16 19 H 0.21 2.97 7.80 -54.10 -0.42 2.55 16 20 H 0.09 1.48 4.83 -51.93 -0.25 1.23 16 21 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.03 0.90 6.67 -51.92 -0.35 0.55 16 23 H 0.00 -0.12 8.00 -51.93 -0.42 -0.54 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.09 1.81 7.44 -51.93 -0.39 1.42 16 26 H 0.02 0.41 7.85 -51.93 -0.41 0.00 16 27 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 28 H 0.08 0.98 7.92 -51.92 -0.41 0.57 16 29 H 0.06 0.80 7.21 -51.93 -0.37 0.42 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 275.93 15.07 4.16 4.16 Total: -1.00 -30.84 275.93 -7.50 -38.34 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -5.09 Total: -1.47 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -1.22 Total: -18.72 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: -0.33 Total: -39.33 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.84 -7.50 -38.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308337604.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.169 kcal (2) G-P(sol) polarization free energy of solvation -30.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds