Wall clock time and date at job start Mon Mar 30 2020 02:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46895 * 109.47422 * 335.45800 * 3 2 1 5 5 C 1.46898 * 111.00033 * 62.26157 * 4 3 2 6 6 C 1.50697 * 109.47250 * 199.72010 * 5 4 3 7 7 H 1.08004 * 120.00323 * 5.02526 * 6 5 4 8 8 C 1.37876 * 120.00305 * 185.02275 * 6 5 4 9 9 N 1.31519 * 119.99697 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00398 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46983 * 60.00302 * 10 8 6 12 12 H 1.48505 * 109.47389 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47331 * 299.99931 * 10 8 6 14 14 C 1.46898 * 111.00341 * 186.21576 * 4 3 2 15 15 C 1.52997 * 109.47385 * 66.04500 * 14 4 3 16 16 C 1.53782 * 113.61704 * 274.14170 * 15 14 4 17 17 C 1.53951 * 87.01977 * 220.04584 * 16 15 14 18 18 C 1.53777 * 113.61633 * 176.53399 * 15 14 4 19 19 H 4.40884 * 5.52161 * 180.02562 * 4 1 2 20 20 H 1.09004 * 109.47056 * 215.45724 * 3 2 1 21 21 H 1.08995 * 109.46932 * 95.45955 * 3 2 1 22 22 H 1.09008 * 109.47033 * 319.71912 * 5 4 3 23 23 H 1.08995 * 109.47481 * 79.71618 * 5 4 3 24 24 H 0.97000 * 119.99687 * 179.97438 * 9 8 6 25 25 H 1.09003 * 109.47452 * 186.04907 * 14 4 3 26 26 H 1.09003 * 109.46677 * 306.04806 * 14 4 3 27 27 H 1.09003 * 112.85199 * 45.33261 * 15 14 4 28 28 H 1.09010 * 113.61109 * 334.56832 * 16 15 14 29 29 H 1.09001 * 113.61737 * 105.46204 * 16 15 14 30 30 H 1.08995 * 113.53471 * 270.80498 * 17 16 15 31 31 H 1.09006 * 113.66508 * 139.93074 * 17 16 15 32 32 H 1.09007 * 113.61338 * 254.52485 * 18 15 14 33 33 H 1.08995 * 113.61488 * 25.34597 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1363 -1.2589 0.5752 5 6 2.7105 -2.4083 -0.2344 6 6 2.7919 -3.6643 0.5945 7 1 3.0479 -3.6044 1.6420 8 6 2.5394 -4.8899 0.0156 9 7 2.2280 -4.9629 -1.2601 10 14 2.6409 -6.4468 1.0428 11 1 1.6634 -6.3686 2.1579 12 1 2.3284 -7.6228 0.1915 13 1 4.0121 -6.5868 1.5953 14 6 4.5971 -1.2347 0.7277 15 6 4.9838 -0.1837 1.7701 16 6 5.1308 1.2334 1.1911 17 6 6.3556 1.3948 2.1097 18 6 6.4919 -0.1364 2.0672 19 1 -1.0498 -0.0004 0.0000 20 1 3.0090 0.8379 0.5962 21 1 3.0092 0.0986 -1.0230 22 1 1.6832 -2.2582 -0.5666 23 1 3.3629 -2.5030 -1.1024 24 1 2.0507 -5.8252 -1.6675 25 1 4.9448 -2.2150 1.0538 26 1 5.0580 -0.9852 -0.2281 27 1 4.3635 -0.2273 2.6654 28 1 5.3764 1.2478 0.1292 29 1 4.3035 1.8965 1.4442 30 1 6.1104 1.7842 3.0977 31 1 7.1878 1.9203 1.6411 32 1 6.7619 -0.5774 3.0268 33 1 7.1102 -0.4985 1.2459 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308337604.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:45 Heat of formation + Delta-G solvation = 53.918074 kcal Electronic energy + Delta-G solvation = -13404.677109 eV Core-core repulsion = 11238.751114 eV Total energy + Delta-G solvation = -2165.925994 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.20979 -37.78425 -34.82966 -33.62638 -29.92871 -29.23025 -26.59864 -26.11678 -24.02539 -22.05160 -20.21888 -18.92799 -18.57942 -16.93276 -16.74803 -16.06294 -15.82796 -15.40618 -14.81475 -14.13577 -13.86865 -13.61221 -13.46400 -13.24474 -12.84514 -12.72872 -12.60730 -12.21228 -12.04729 -11.43324 -11.40596 -11.23554 -11.13113 -10.95910 -10.75900 -10.55641 -9.06730 -8.20109 -6.30779 1.39094 1.42820 1.50766 1.86387 1.97948 2.40239 3.11256 3.38963 3.63861 3.80297 3.86694 4.00795 4.09808 4.45033 4.52511 4.58617 4.71706 4.87365 4.92790 4.95858 5.06375 5.09597 5.13533 5.20212 5.22091 5.29650 5.47044 5.64988 5.70482 6.06235 6.34879 6.56512 6.79817 6.85117 7.38542 8.90239 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.026105 B = 0.009587 C = 0.007494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.343158 B = 2920.055593 C = 3735.241287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.209 4.209 3 C 0.153 3.847 4 N -0.540 5.540 5 C 0.207 3.793 6 C -0.521 4.521 7 H 0.060 0.940 8 C 0.000 4.000 9 N -0.936 5.936 10 Si 0.969 3.031 11 H -0.269 1.269 12 H -0.281 1.281 13 H -0.266 1.266 14 C 0.077 3.923 15 C -0.109 4.109 16 C -0.141 4.141 17 C -0.126 4.126 18 C -0.135 4.135 19 H 0.248 0.752 20 H 0.120 0.880 21 H 0.041 0.959 22 H 0.003 0.997 23 H -0.036 1.036 24 H 0.264 0.736 25 H 0.057 0.943 26 H 0.022 0.978 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.455 11.525 5.296 13.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.209 4.209 3 C 0.027 3.973 4 N -0.264 5.264 5 C 0.081 3.919 6 C -0.559 4.559 7 H 0.078 0.922 8 C -0.197 4.197 9 N -0.576 5.576 10 Si 0.794 3.206 11 H -0.195 1.195 12 H -0.207 1.207 13 H -0.191 1.191 14 C -0.050 4.050 15 C -0.127 4.127 16 C -0.178 4.178 17 C -0.164 4.164 18 C -0.173 4.173 19 H 0.264 0.736 20 H 0.138 0.862 21 H 0.059 0.941 22 H 0.021 0.979 23 H -0.018 1.018 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.041 0.959 27 H 0.105 0.895 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.236 11.350 5.620 13.705 hybrid contribution -0.081 -1.086 -0.854 1.384 sum 5.154 10.264 4.766 12.435 Atomic orbital electron populations 1.25621 0.96774 0.99529 1.00555 1.23539 0.95474 1.01091 1.00795 1.19311 0.84969 0.94657 0.98382 1.62106 1.12028 1.01524 1.50715 1.19408 0.93499 0.88455 0.90582 1.21417 1.46551 0.91483 0.96493 0.92199 1.25933 0.94845 1.02765 0.96184 1.70092 1.48662 1.26173 1.12715 0.85438 0.79097 0.77757 0.78351 1.19454 1.20669 1.19059 1.22001 0.86341 0.99610 0.97078 1.22601 0.97324 0.94546 0.98277 1.23134 0.99057 0.95899 0.99685 1.22770 0.97911 0.95441 1.00238 1.22917 0.94866 0.97476 1.02012 0.73614 0.86201 0.94132 0.97931 1.01793 0.92697 0.92404 0.95946 0.89516 0.90374 0.90865 0.89298 0.90295 0.91078 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.33 19.25 74.32 1.43 -5.90 16 2 C -0.21 -8.36 12.03 31.12 0.37 -7.99 16 3 C 0.15 5.87 5.06 84.50 0.43 6.30 16 4 N -0.54 -24.37 4.43 -911.94 -4.04 -28.41 16 5 C 0.21 11.56 4.62 85.56 0.40 11.96 16 6 C -0.52 -30.75 8.56 25.60 0.22 -30.54 16 7 H 0.06 3.49 7.81 -2.91 -0.02 3.46 16 8 C 0.00 0.03 5.46 84.65 0.46 0.49 16 9 N -0.94 -57.92 13.29 21.45 0.28 -57.63 16 10 Si 0.97 45.41 29.54 68.60 2.03 47.43 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 13 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 14 C 0.08 3.01 4.70 86.30 0.41 3.41 16 15 C -0.11 -3.19 3.50 -10.27 -0.04 -3.22 16 16 C -0.14 -3.28 5.80 31.18 0.18 -3.10 16 17 C -0.13 -2.45 8.09 31.18 0.25 -2.19 16 18 C -0.13 -3.19 7.65 31.12 0.24 -2.96 16 19 H 0.25 6.34 7.80 -4.43 -0.03 6.30 16 20 H 0.12 3.80 4.83 -2.39 -0.01 3.78 16 21 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.00 0.16 6.67 -2.38 -0.02 0.14 16 23 H -0.04 -2.16 8.00 -2.39 -0.02 -2.18 16 24 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 25 H 0.06 2.53 7.44 -2.39 -0.02 2.51 16 26 H 0.02 0.86 7.85 -2.39 -0.02 0.84 16 27 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.08 1.83 7.92 -2.38 -0.02 1.81 16 29 H 0.07 1.60 7.21 -2.39 -0.02 1.58 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.08 1.87 8.10 -2.39 -0.02 1.85 16 Total: -1.00 -67.57 275.93 3.68 -63.89 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 1.06 Total: 8.47 kcal Atomic # 6 Polarization: -38.09 SS G_CDS: 4.35 Total: -33.74 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -3.76 Total: -86.05 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -67.57 3.68 -63.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308337604.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.809 kcal (2) G-P(sol) polarization free energy of solvation -67.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds