Wall clock time and date at job start Mon Mar 30 2020 02:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34846 * 126.28924 * 2 1 4 4 N 1.36346 * 108.21815 * 179.97438 * 3 2 1 5 5 C 1.46500 * 125.63798 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46998 * 89.99731 * 5 4 3 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46957 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99816 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00340 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99773 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00296 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47086 * 59.99480 * 12 10 8 14 14 H 1.48494 * 109.47288 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46879 * 299.99424 * 12 10 8 16 16 C 1.36339 * 108.72671 * 0.25986 * 4 3 2 17 17 C 1.34858 * 108.21876 * 359.56882 * 16 4 3 18 18 C 1.50700 * 126.29089 * 180.15713 * 17 16 4 19 19 H 1.09006 * 109.46885 * 89.97647 * 1 2 3 20 20 H 1.08994 * 109.47196 * 209.97871 * 1 2 3 21 21 H 1.09004 * 109.47316 * 329.98145 * 1 2 3 22 22 H 1.08000 * 125.89492 * 0.03550 * 3 2 1 23 23 H 1.09000 * 109.47175 * 329.99862 * 5 4 3 24 24 H 1.09001 * 109.47297 * 209.99370 * 5 4 3 25 25 H 1.08993 * 109.46955 * 300.00226 * 6 5 4 26 26 H 1.09000 * 109.47050 * 60.00054 * 6 5 4 27 27 H 1.08993 * 109.47839 * 299.99931 * 7 6 5 28 28 H 1.09000 * 109.47160 * 60.00369 * 7 6 5 29 29 H 0.97000 * 120.00540 * 180.02562 * 11 10 8 30 30 H 1.08000 * 125.89448 * 179.69607 * 16 4 3 31 31 H 1.09004 * 109.47169 * 270.30989 * 18 17 16 32 32 H 1.08993 * 109.47440 * 30.31722 * 18 17 16 33 33 H 1.09007 * 109.46757 * 150.31487 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3051 1.0869 0.0000 4 7 3.6013 0.6640 0.0006 5 6 4.7821 1.5311 0.0013 6 6 5.1924 1.8328 1.4441 7 6 6.4260 2.7378 1.4448 8 6 6.8306 3.0345 2.8659 9 1 6.2647 2.6187 3.6864 10 6 7.9231 3.8367 3.1185 11 7 8.6125 4.3426 2.1193 12 14 8.4250 4.2038 4.8800 13 1 8.7437 2.9330 5.5790 14 1 9.6222 5.0824 4.8807 15 1 7.3084 4.8876 5.5805 16 6 3.6169 -0.6993 -0.0049 17 6 2.3409 -1.1356 0.0007 18 6 1.8899 -2.5735 0.0009 19 1 -0.3633 0.0004 -1.0277 20 1 -0.3633 -0.8901 0.5135 21 1 -0.3634 0.8898 0.5141 22 1 1.9747 2.1151 0.0005 23 1 4.5485 2.4636 -0.5125 24 1 5.6021 1.0289 -0.5121 25 1 4.3726 2.3349 1.9575 26 1 5.4261 0.9003 1.9579 27 1 7.2458 2.2353 0.9315 28 1 6.1928 3.6703 0.9309 29 1 9.3814 4.9067 2.2970 30 1 4.4990 -1.3224 -0.0105 31 1 1.7814 -2.9205 -1.0267 32 1 2.6300 -3.1864 0.5152 33 1 0.9317 -2.6536 0.5145 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379373799.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:33 Heat of formation + Delta-G solvation = 17.630273 kcal Electronic energy + Delta-G solvation = -12879.019465 eV Core-core repulsion = 10711.519914 eV Total energy + Delta-G solvation = -2167.499552 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.91794 -35.15119 -33.18249 -31.37726 -30.83356 -28.04669 -26.10624 -25.21006 -22.66736 -20.44815 -19.70647 -18.66933 -16.68855 -15.84386 -14.64101 -14.40377 -14.33208 -13.68729 -13.29230 -12.98094 -12.63256 -12.61458 -12.15609 -12.14831 -11.77854 -11.62618 -11.29273 -10.91644 -10.85958 -10.80392 -10.62848 -9.87744 -9.56080 -9.23249 -8.42170 -7.88603 -7.69243 -6.07142 -4.10180 2.63462 3.18560 3.29958 3.34238 3.36180 3.41018 4.41046 5.13971 5.28952 5.34632 5.36554 5.47415 5.59985 5.66007 5.78254 5.80759 5.80810 5.87884 5.94703 6.15914 6.16109 6.38609 6.53215 6.63127 6.79628 6.91225 7.35464 7.54541 7.60336 7.67773 7.78452 7.90811 8.32986 8.95761 9.54529 11.04100 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.057198 B = 0.005361 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.414058 B = 5221.371748 C = 5241.246923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.180 4.180 3 C -0.011 4.011 4 N -0.436 5.436 5 C 0.101 3.899 6 C -0.122 4.122 7 C 0.024 3.976 8 C -0.523 4.523 9 H 0.055 0.945 10 C 0.058 3.942 11 N -0.896 5.896 12 Si 0.894 3.106 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.276 1.276 16 C -0.011 4.011 17 C -0.180 4.180 18 C -0.072 4.072 19 H 0.053 0.947 20 H 0.056 0.944 21 H 0.054 0.946 22 H 0.155 0.845 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.018 0.982 28 H 0.018 0.982 29 H 0.262 0.738 30 H 0.155 0.845 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.650 -8.551 -5.104 15.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.187 4.187 3 C -0.143 4.143 4 N -0.109 5.109 5 C -0.020 4.020 6 C -0.161 4.161 7 C -0.014 4.014 8 C -0.561 4.561 9 H 0.073 0.927 10 C -0.143 4.143 11 N -0.535 5.535 12 Si 0.722 3.278 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.202 1.202 16 C -0.143 4.143 17 C -0.187 4.187 18 C -0.130 4.130 19 H 0.072 0.928 20 H 0.075 0.925 21 H 0.073 0.927 22 H 0.173 0.827 23 H 0.102 0.898 24 H 0.103 0.897 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.072 0.928 30 H 0.173 0.827 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.164 -8.195 -5.149 14.775 hybrid contribution 0.511 0.374 0.975 1.163 sum -10.653 -7.821 -4.174 13.859 Atomic orbital electron populations 1.20027 0.90875 1.01341 1.00723 1.19292 0.94992 0.92298 1.12110 1.21585 0.82763 0.98870 1.11034 1.44303 1.06357 1.06056 1.54172 1.22215 0.85224 0.93722 1.00857 1.22034 1.00748 1.01092 0.92180 1.19053 0.90853 0.93897 0.97562 1.21155 1.12469 1.30248 0.92266 0.92695 1.25013 0.96334 0.95774 0.97207 1.69944 1.19088 1.33618 1.30806 0.86623 0.77992 0.78320 0.84896 1.20183 1.21194 1.20179 1.21587 0.98329 0.83308 1.11034 1.19295 0.92335 0.94953 1.12113 1.20026 1.00506 0.91711 1.00720 0.92778 0.92520 0.92698 0.82737 0.89752 0.89745 0.92664 0.92667 0.96358 0.96357 0.92834 0.82738 0.92782 0.92694 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.22 36.01 0.37 -0.48 16 2 C -0.18 -2.69 6.14 -104.82 -0.64 -3.33 16 3 C -0.01 -0.18 11.35 -16.75 -0.19 -0.37 16 4 N -0.44 -7.15 2.75 -117.12 -0.32 -7.47 16 5 C 0.10 1.69 6.09 -4.04 -0.02 1.66 16 6 C -0.12 -2.49 5.48 -26.73 -0.15 -2.64 16 7 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 8 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 9 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 10 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 11 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 12 Si 0.89 21.58 29.54 -169.99 -5.02 16.55 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 C -0.01 -0.18 11.35 -16.75 -0.19 -0.37 16 17 C -0.18 -2.69 6.14 -104.82 -0.64 -3.33 16 18 C -0.07 -0.85 10.22 36.01 0.37 -0.48 16 19 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 20 H 0.06 0.61 7.36 -51.93 -0.38 0.23 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.16 2.12 8.06 -52.49 -0.42 1.70 16 23 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 24 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 25 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.16 2.12 8.06 -52.49 -0.42 1.70 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.61 7.36 -51.93 -0.38 0.23 16 LS Contribution 281.71 15.07 4.25 4.25 Total: -1.00 -30.20 281.71 -7.39 -37.59 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -5.38 Total: -2.70 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: -1.65 Total: -22.36 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.41 Total: -33.32 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.20 -7.39 -37.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379373799.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.220 kcal (2) G-P(sol) polarization free energy of solvation -30.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds