Wall clock time and date at job start Mon Mar 30 2020 02:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34846 * 126.28924 * 2 1 4 4 N 1.36346 * 108.21815 * 179.97438 * 3 2 1 5 5 C 1.46500 * 125.63798 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46998 * 89.99731 * 5 4 3 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46957 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99816 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00340 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99773 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00296 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47086 * 59.99480 * 12 10 8 14 14 H 1.48494 * 109.47288 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46879 * 299.99424 * 12 10 8 16 16 C 1.36339 * 108.72671 * 0.25986 * 4 3 2 17 17 C 1.34858 * 108.21876 * 359.56882 * 16 4 3 18 18 C 1.50700 * 126.29089 * 180.15713 * 17 16 4 19 19 H 1.09006 * 109.46885 * 89.97647 * 1 2 3 20 20 H 1.08994 * 109.47196 * 209.97871 * 1 2 3 21 21 H 1.09004 * 109.47316 * 329.98145 * 1 2 3 22 22 H 1.08000 * 125.89492 * 0.03550 * 3 2 1 23 23 H 1.09000 * 109.47175 * 329.99862 * 5 4 3 24 24 H 1.09001 * 109.47297 * 209.99370 * 5 4 3 25 25 H 1.08993 * 109.46955 * 300.00226 * 6 5 4 26 26 H 1.09000 * 109.47050 * 60.00054 * 6 5 4 27 27 H 1.08993 * 109.47839 * 299.99931 * 7 6 5 28 28 H 1.09000 * 109.47160 * 60.00369 * 7 6 5 29 29 H 0.97000 * 120.00540 * 180.02562 * 11 10 8 30 30 H 1.08000 * 125.89448 * 179.69607 * 16 4 3 31 31 H 1.09004 * 109.47169 * 270.30989 * 18 17 16 32 32 H 1.08993 * 109.47440 * 30.31722 * 18 17 16 33 33 H 1.09007 * 109.46757 * 150.31487 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3051 1.0869 0.0000 4 7 3.6013 0.6640 0.0006 5 6 4.7821 1.5311 0.0013 6 6 5.1924 1.8328 1.4441 7 6 6.4260 2.7378 1.4448 8 6 6.8306 3.0345 2.8659 9 1 6.2647 2.6187 3.6864 10 6 7.9231 3.8367 3.1185 11 7 8.6125 4.3426 2.1193 12 14 8.4250 4.2038 4.8800 13 1 8.7437 2.9330 5.5790 14 1 9.6222 5.0824 4.8807 15 1 7.3084 4.8876 5.5805 16 6 3.6169 -0.6993 -0.0049 17 6 2.3409 -1.1356 0.0007 18 6 1.8899 -2.5735 0.0009 19 1 -0.3633 0.0004 -1.0277 20 1 -0.3633 -0.8901 0.5135 21 1 -0.3634 0.8898 0.5141 22 1 1.9747 2.1151 0.0005 23 1 4.5485 2.4636 -0.5125 24 1 5.6021 1.0289 -0.5121 25 1 4.3726 2.3349 1.9575 26 1 5.4261 0.9003 1.9579 27 1 7.2458 2.2353 0.9315 28 1 6.1928 3.6703 0.9309 29 1 9.3814 4.9067 2.2970 30 1 4.4990 -1.3224 -0.0105 31 1 1.7814 -2.9205 -1.0267 32 1 2.6300 -3.1864 0.5152 33 1 0.9317 -2.6536 0.5145 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379373799.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:33 Heat of formation + Delta-G solvation = 2.633825 kcal Electronic energy + Delta-G solvation = -12879.669760 eV Core-core repulsion = 10711.519914 eV Total energy + Delta-G solvation = -2168.149846 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.08618 -36.74604 -34.95025 -33.03222 -31.85947 -29.60704 -27.16385 -26.85495 -24.27414 -22.19038 -20.88211 -19.79975 -18.62805 -17.34691 -16.51964 -15.90173 -15.74110 -14.74282 -14.54420 -14.46796 -14.13738 -13.50816 -13.49831 -13.35167 -13.29165 -13.07492 -12.74183 -12.56062 -12.39865 -12.36417 -11.93334 -11.67048 -11.53126 -11.28677 -10.59174 -9.06540 -8.85502 -8.24291 -6.35662 1.38303 1.40723 1.43258 1.49112 2.06830 2.16184 2.39050 3.09132 3.83759 4.14774 4.22873 4.26747 4.41625 4.47428 4.49476 4.73889 4.80013 4.81586 4.93602 4.94088 5.06445 5.06834 5.26848 5.28064 5.43451 5.44887 5.60179 5.70175 5.77767 6.18201 6.24225 6.46984 6.59096 6.79454 7.33809 8.86865 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.057198 B = 0.005361 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.414058 B = 5221.371748 C = 5241.246923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.189 4.189 3 C -0.033 4.033 4 N -0.446 5.446 5 C 0.112 3.888 6 C -0.104 4.104 7 C 0.028 3.972 8 C -0.549 4.549 9 H 0.055 0.945 10 C 0.004 3.996 11 N -0.930 5.930 12 Si 0.963 3.037 13 H -0.268 1.268 14 H -0.280 1.280 15 H -0.268 1.268 16 C -0.033 4.033 17 C -0.189 4.189 18 C -0.071 4.071 19 H 0.065 0.935 20 H 0.066 0.934 21 H 0.061 0.939 22 H 0.167 0.833 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.001 0.999 28 H 0.001 0.999 29 H 0.265 0.735 30 H 0.167 0.833 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.628 -9.270 -4.574 16.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.195 4.195 3 C -0.163 4.163 4 N -0.120 5.120 5 C -0.009 4.009 6 C -0.143 4.143 7 C -0.010 4.010 8 C -0.586 4.586 9 H 0.073 0.927 10 C -0.194 4.194 11 N -0.570 5.570 12 Si 0.787 3.213 13 H -0.193 1.193 14 H -0.205 1.205 15 H -0.193 1.193 16 C -0.163 4.163 17 C -0.195 4.195 18 C -0.128 4.128 19 H 0.084 0.916 20 H 0.085 0.915 21 H 0.080 0.920 22 H 0.184 0.816 23 H 0.111 0.889 24 H 0.111 0.889 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.074 0.926 30 H 0.184 0.816 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.166 -8.931 -4.622 15.784 hybrid contribution 0.780 0.572 0.780 1.243 sum -11.386 -8.359 -3.843 14.638 Atomic orbital electron populations 1.20085 0.88744 1.02228 1.01733 1.19777 0.96638 0.92057 1.11054 1.21987 0.82699 0.99947 1.11652 1.44268 1.06261 1.06288 1.55202 1.21946 0.86081 0.94613 0.98254 1.21733 0.98302 0.99446 0.94771 1.18927 0.92298 0.93842 0.95894 1.21600 1.12888 1.30529 0.93626 0.92719 1.25914 0.96277 0.95468 1.01727 1.70059 1.19583 1.34214 1.33098 0.85535 0.77849 0.78434 0.79467 1.19325 1.20529 1.19312 1.21989 0.99417 0.83232 1.11646 1.19781 0.92135 0.96560 1.11060 1.20085 1.01132 0.89840 1.01731 0.91632 0.91518 0.91955 0.81582 0.88887 0.88880 0.93285 0.93296 0.98101 0.98098 0.92596 0.81577 0.91634 0.91954 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.49 10.22 71.24 0.73 -0.77 16 2 C -0.19 -5.32 6.14 -19.99 -0.12 -5.44 16 3 C -0.03 -0.99 11.35 83.21 0.94 -0.05 16 4 N -0.45 -14.29 2.75 -524.46 -1.44 -15.74 16 5 C 0.11 3.73 6.09 86.38 0.53 4.25 16 6 C -0.10 -4.27 5.48 30.60 0.17 -4.10 16 7 C 0.03 1.44 4.97 29.85 0.15 1.59 16 8 C -0.55 -31.16 9.11 25.60 0.23 -30.93 16 9 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 10 C 0.00 0.26 5.46 84.65 0.46 0.72 16 11 N -0.93 -55.71 13.29 21.45 0.28 -55.42 16 12 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 13 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 14 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 15 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 16 C -0.03 -0.99 11.35 83.22 0.94 -0.04 16 17 C -0.19 -5.32 6.14 -19.99 -0.12 -5.44 16 18 C -0.07 -1.49 10.22 71.24 0.73 -0.77 16 19 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 20 H 0.07 1.27 7.36 -2.39 -0.02 1.25 16 21 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.17 4.41 8.06 -2.91 -0.02 4.39 16 23 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 24 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 25 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 28 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 30 H 0.17 4.41 8.06 -2.91 -0.02 4.39 16 31 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.27 7.36 -2.38 -0.02 1.25 16 Total: -1.00 -63.51 281.71 6.56 -56.95 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 1.05 Total: 9.12 kcal Atomic # 6 Polarization: -45.62 SS G_CDS: 4.64 Total: -40.98 kcal Atomic # 7 Polarization: -70.00 SS G_CDS: -1.16 Total: -71.16 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -63.51 6.56 -56.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379373799.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.585 kcal (2) G-P(sol) polarization free energy of solvation -63.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds