Wall clock time and date at job start Mon Mar 30 2020 02:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46902 * 109.46842 * 177.14024 * 3 2 1 5 5 C 1.46905 * 110.99938 * 72.02227 * 4 3 2 6 6 C 1.50696 * 109.47213 * 199.62209 * 5 4 3 7 7 H 1.07996 * 120.00214 * 5.02122 * 6 5 4 8 8 C 1.37876 * 120.00048 * 185.02683 * 6 5 4 9 9 N 1.31514 * 120.00451 * 179.97438 * 8 6 5 10 10 Si 1.86807 * 119.99748 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46838 * 90.00344 * 10 8 6 12 12 H 1.48502 * 109.47358 * 209.99896 * 10 8 6 13 13 H 1.48495 * 109.47366 * 330.00329 * 10 8 6 14 14 C 1.46898 * 111.00162 * 195.97445 * 4 3 2 15 15 H 1.09005 * 109.47066 * 186.04930 * 14 4 3 16 16 C 1.52996 * 109.46983 * 306.05113 * 14 4 3 17 17 C 1.52998 * 109.47043 * 66.04910 * 14 4 3 18 18 C 1.53000 * 117.50058 * 248.62526 * 17 14 4 19 19 C 1.52994 * 117.49963 * 179.97438 * 17 14 4 20 20 H 4.40888 * 5.52094 * 180.02562 * 4 1 2 21 21 H 1.09000 * 109.47094 * 57.14845 * 3 2 1 22 22 H 1.08991 * 109.47330 * 297.14168 * 3 2 1 23 23 H 1.09010 * 109.46950 * 319.62066 * 5 4 3 24 24 H 1.08993 * 109.47203 * 79.61522 * 5 4 3 25 25 H 0.97000 * 120.00305 * 180.02562 * 9 8 6 26 26 H 1.08993 * 109.47581 * 59.99695 * 16 14 4 27 27 H 1.09000 * 109.46928 * 180.02562 * 16 14 4 28 28 H 1.09000 * 109.47031 * 299.99776 * 16 14 4 29 29 H 1.09001 * 115.56394 * 34.30932 * 17 14 4 30 30 H 1.09005 * 117.49425 * 359.97438 * 18 17 14 31 31 H 1.08995 * 117.50478 * 145.02061 * 18 17 14 32 32 H 1.08994 * 117.50161 * 214.97669 * 19 17 14 33 33 H 1.09005 * 117.49881 * 359.97438 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 1.3842 -0.0691 5 6 2.9111 2.0858 1.2020 6 6 2.9620 3.5739 0.9701 7 1 3.0615 3.9611 -0.0332 8 6 2.8818 4.4413 2.0389 9 7 2.9267 5.7400 1.8366 10 14 2.7091 3.7717 3.7742 11 1 4.0574 3.5660 4.3617 12 1 1.9496 4.7401 4.6052 13 1 1.9833 2.4768 3.7353 14 6 4.5535 1.4229 -0.4489 15 1 4.9180 2.4484 -0.3884 16 6 5.3606 0.5377 0.5029 17 6 4.7122 0.9089 -1.8812 18 6 5.4234 -0.4317 -2.0760 19 6 6.1256 0.8712 -2.4657 20 1 -1.0502 -0.0005 0.0002 21 1 3.0096 -0.5566 -0.8633 22 1 3.0096 -0.4679 0.9144 23 1 1.9335 1.8133 1.6001 24 1 3.6854 1.8024 1.9148 25 1 2.8706 6.3502 2.5886 26 1 4.9962 -0.4877 0.4425 27 1 6.4132 0.5668 0.2214 28 1 5.2476 0.9039 1.5233 29 1 3.8933 1.1473 -2.5599 30 1 5.7786 -0.9473 -1.1837 31 1 5.0725 -1.0751 -2.8828 32 1 6.2364 1.0845 -3.5288 33 1 6.9424 1.2130 -1.8300 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379391583.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:45 Heat of formation + Delta-G solvation = 68.315846 kcal Electronic energy + Delta-G solvation = -13657.955784 eV Core-core repulsion = 11492.654123 eV Total energy + Delta-G solvation = -2165.301660 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.25159 -37.17116 -34.78808 -33.75395 -30.88321 -29.81914 -26.97983 -25.37294 -23.21381 -22.50865 -20.10953 -18.92930 -18.75686 -17.33978 -16.73201 -16.10068 -15.64570 -15.31155 -14.91191 -14.50235 -14.08386 -13.84094 -13.45840 -12.96294 -12.79359 -12.57585 -12.46255 -12.06446 -11.89249 -11.77644 -11.54772 -11.25749 -11.13579 -10.97821 -10.76831 -10.61106 -9.00185 -8.28715 -6.30711 1.30324 1.33016 1.43881 1.87070 1.99801 2.32410 2.97559 3.04428 3.35275 3.66194 3.94592 4.12317 4.17472 4.32220 4.40495 4.46917 4.53057 4.66101 4.76425 4.85486 4.93722 5.00016 5.05803 5.16494 5.22696 5.35308 5.37409 5.45626 5.56980 5.99921 6.43005 6.62653 6.75332 6.81761 7.32264 8.88376 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.026545 B = 0.011084 C = 0.009057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.556384 B = 2525.485665 C = 3090.942779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.208 4.208 3 C 0.158 3.842 4 N -0.535 5.535 5 C 0.174 3.826 6 C -0.509 4.509 7 H 0.033 0.967 8 C 0.009 3.991 9 N -0.948 5.948 10 Si 0.943 3.057 11 H -0.263 1.263 12 H -0.280 1.280 13 H -0.255 1.255 14 C 0.118 3.882 15 H 0.057 0.943 16 C -0.180 4.180 17 C -0.158 4.158 18 C -0.169 4.169 19 C -0.173 4.173 20 H 0.246 0.754 21 H 0.113 0.887 22 H 0.058 0.942 23 H 0.017 0.983 24 H -0.001 1.001 25 H 0.266 0.734 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.560 -15.003 -3.696 15.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.208 4.208 3 C 0.031 3.969 4 N -0.259 5.259 5 C 0.047 3.953 6 C -0.548 4.548 7 H 0.052 0.948 8 C -0.188 4.188 9 N -0.589 5.589 10 Si 0.766 3.234 11 H -0.188 1.188 12 H -0.205 1.205 13 H -0.179 1.179 14 C 0.010 3.990 15 H 0.075 0.925 16 C -0.239 4.239 17 C -0.177 4.177 18 C -0.205 4.205 19 C -0.210 4.210 20 H 0.263 0.737 21 H 0.131 0.869 22 H 0.076 0.924 23 H 0.035 0.965 24 H 0.017 0.983 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.111 0.889 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.307 -14.590 -3.972 15.479 hybrid contribution 0.005 0.268 1.333 1.360 sum 3.313 -14.322 -2.639 14.935 Atomic orbital electron populations 1.25636 0.96786 0.99255 1.00937 1.23612 0.95471 1.01125 1.00631 1.19116 0.84831 0.90828 1.02106 1.61926 1.18048 1.12896 1.32987 1.19940 0.94950 0.93007 0.87442 1.21223 1.48993 0.90712 0.93844 0.94817 1.25807 0.94618 0.94860 1.03549 1.70049 1.52656 1.03244 1.32917 0.85780 0.79268 0.78960 0.79374 1.18805 1.20549 1.17938 1.21030 0.86233 0.98686 0.93067 0.92497 1.22520 1.01455 1.00568 0.99325 1.22166 0.96666 1.02682 0.96183 1.23255 1.03129 0.90200 1.03952 1.23013 0.94466 1.01824 1.01699 0.73747 0.86939 0.92443 0.96475 0.98309 0.92466 0.90409 0.90474 0.94031 0.88904 0.87393 0.87651 0.87904 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.65 19.25 74.32 1.43 -5.22 16 2 C -0.21 -7.53 12.57 31.12 0.39 -7.14 16 3 C 0.16 5.40 4.19 84.50 0.35 5.76 16 4 N -0.54 -22.56 4.30 -886.58 -3.82 -26.38 16 5 C 0.17 8.58 3.54 85.55 0.30 8.88 16 6 C -0.51 -30.38 9.11 25.60 0.23 -30.15 16 7 H 0.03 2.26 8.06 -2.91 -0.02 2.24 16 8 C 0.01 0.52 5.47 84.65 0.46 0.98 16 9 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 10 Si 0.94 45.08 27.37 68.60 1.88 46.96 16 11 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 13 H -0.26 -11.61 6.69 99.48 0.67 -10.95 16 14 C 0.12 4.33 2.62 44.91 0.12 4.44 16 15 H 0.06 2.55 7.43 -2.38 -0.02 2.53 16 16 C -0.18 -5.38 7.11 71.98 0.51 -4.87 16 17 C -0.16 -4.68 4.77 -10.80 -0.05 -4.74 16 18 C -0.17 -3.60 9.09 30.61 0.28 -3.33 16 19 C -0.17 -4.07 9.90 30.61 0.30 -3.77 16 20 H 0.25 5.56 7.80 -4.41 -0.03 5.53 16 21 H 0.11 3.27 6.50 -2.39 -0.02 3.25 16 22 H 0.06 1.84 7.14 -2.39 -0.02 1.82 16 23 H 0.02 0.88 6.53 -2.38 -0.02 0.87 16 24 H 0.00 -0.03 5.33 -2.39 -0.01 -0.05 16 25 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 26 H 0.08 1.95 5.52 -2.39 -0.01 1.94 16 27 H 0.08 1.96 7.08 -2.39 -0.02 1.94 16 28 H 0.04 1.40 6.45 -2.39 -0.02 1.38 16 29 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 30 H 0.11 2.10 5.85 -2.38 -0.01 2.08 16 31 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.09 2.19 7.61 -2.38 -0.02 2.17 16 Total: -1.00 -69.16 268.19 3.73 -65.43 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 1.04 Total: 13.23 kcal Atomic # 6 Polarization: -43.48 SS G_CDS: 4.33 Total: -39.15 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -3.52 Total: -86.47 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.96 kcal Total: -69.16 3.73 -65.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379391583.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.742 kcal (2) G-P(sol) polarization free energy of solvation -69.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds