Wall clock time and date at job start Mon Mar 30 2020 02:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08990 * 109.47272 * 2 1 4 4 C 1.50700 * 109.47051 * 120.00091 * 2 1 3 5 5 H 1.08008 * 120.00048 * 120.00057 * 4 2 1 6 6 C 1.37879 * 120.00228 * 300.00131 * 4 2 1 7 7 N 1.31517 * 119.99712 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99967 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47361 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46890 * 120.00229 * 8 6 4 11 11 H 1.48506 * 109.46955 * 239.99575 * 8 6 4 12 12 N 1.46900 * 109.46992 * 239.99925 * 2 1 3 13 13 C 1.46901 * 110.99866 * 85.00322 * 12 2 1 14 14 C 1.50705 * 109.46937 * 179.97438 * 13 12 2 15 15 C 1.38596 * 120.79970 * 269.97383 * 14 13 12 16 16 N 1.32333 * 119.10260 * 180.02562 * 15 14 13 17 17 C 1.31794 * 120.81891 * 359.97438 * 16 15 14 18 18 N 1.31794 * 121.75681 * 0.02562 * 17 16 15 19 19 C 1.32338 * 120.81727 * 359.97438 * 18 17 16 20 20 H 1.09005 * 109.46905 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.46658 * 300.00093 * 1 2 3 22 22 H 1.08994 * 109.47147 * 60.00036 * 1 2 3 23 23 H 0.96993 * 120.00028 * 180.02562 * 7 6 4 24 24 H 1.00904 * 111.00396 * 321.04685 * 12 2 1 25 25 H 1.08994 * 109.47403 * 59.99493 * 13 12 2 26 26 H 1.09006 * 109.47039 * 299.99458 * 13 12 2 27 27 H 1.08003 * 120.44608 * 0.04351 * 15 14 13 28 28 H 1.07999 * 119.12139 * 179.97438 * 17 16 15 29 29 H 1.07992 * 120.44490 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9436 0.8301 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.1474 -2.2864 3.6037 10 1 3.1472 -0.1859 4.8161 11 1 1.1678 -1.5867 4.8165 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5886 -0.5216 -3.5557 15 6 3.9448 -0.5837 -3.8345 16 7 4.3521 -1.2459 -4.9054 17 6 3.4863 -1.8414 -5.7008 18 7 2.1898 -1.8035 -5.4673 19 6 1.7089 -1.1603 -4.4155 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 0.7095 1.1617 3.4844 24 1 1.4496 -1.4980 -1.4101 25 1 2.7588 1.0462 -2.1182 26 1 1.0871 0.6163 -2.5526 27 1 4.6595 -0.0984 -3.1863 28 1 3.8489 -2.3740 -6.5676 29 1 0.6454 -1.1334 -4.2296 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379409965.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:46 Heat of formation + Delta-G solvation = 43.981103 kcal Electronic energy + Delta-G solvation = -12884.519716 eV Core-core repulsion = 10614.622479 eV Total energy + Delta-G solvation = -2269.897237 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.84499 -36.36398 -33.56512 -33.41714 -31.56414 -28.39372 -25.40368 -24.99641 -24.43620 -21.99693 -20.29331 -17.53719 -17.39730 -16.49459 -15.02204 -14.82257 -14.40967 -13.87312 -13.56660 -13.43094 -13.13549 -12.74724 -11.81005 -11.70439 -11.06464 -10.88994 -10.77926 -10.69789 -10.49566 -10.21938 -9.99143 -9.29808 -9.12558 -9.05619 -8.41882 -7.39067 -6.04030 -4.07544 1.01854 1.18526 3.28899 3.36974 3.42387 3.88358 4.22806 4.33025 4.40679 4.77017 4.94867 5.03692 5.27977 5.43434 5.55037 5.80961 6.04801 6.19293 6.50207 6.60468 6.75396 6.98600 7.05087 7.23695 7.66156 7.81009 8.15360 8.17505 8.39132 8.50530 8.99784 9.58219 11.03022 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.056914 B = 0.006647 C = 0.006284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.855582 B = 4211.686291 C = 4454.944097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.210 3.790 3 H 0.036 0.964 4 C -0.496 4.496 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.678 5.678 13 C 0.102 3.898 14 C -0.168 4.168 15 C 0.163 3.837 16 N -0.523 5.523 17 C 0.276 3.724 18 N -0.523 5.523 19 C 0.145 3.855 20 H 0.028 0.972 21 H 0.090 0.910 22 H 0.005 0.995 23 H 0.260 0.740 24 H 0.326 0.674 25 H 0.080 0.920 26 H 0.035 0.965 27 H 0.169 0.831 28 H 0.191 0.809 29 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.560 -1.534 -11.266 11.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.103 3.897 3 H 0.054 0.946 4 C -0.535 4.535 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.308 5.308 13 C -0.029 4.029 14 C -0.172 4.172 15 C -0.003 4.003 16 N -0.236 5.236 17 C -0.012 4.012 18 N -0.237 5.237 19 C -0.021 4.021 20 H 0.047 0.953 21 H 0.109 0.891 22 H 0.025 0.975 23 H 0.069 0.931 24 H 0.143 0.857 25 H 0.099 0.901 26 H 0.053 0.947 27 H 0.186 0.814 28 H 0.207 0.793 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.493 -1.823 -11.750 12.149 hybrid contribution -1.061 0.122 1.427 1.783 sum 1.432 -1.701 -10.323 10.559 Atomic orbital electron populations 1.22445 1.00540 0.99317 1.00643 1.19230 0.89742 0.94531 0.86186 0.94597 1.21171 1.30292 1.12512 0.89482 0.91864 1.24950 0.95280 0.95194 0.99089 1.69884 1.37297 1.23157 1.23354 0.86440 0.78533 0.79670 0.82764 1.19719 1.21090 1.21188 1.60933 1.58364 1.08774 1.02737 1.20783 0.99151 0.95083 0.87860 1.21879 0.96001 1.00473 0.98845 1.23193 0.94063 0.91394 0.91678 1.68422 1.40395 1.09467 1.05339 1.24850 0.85058 0.93812 0.97474 1.68383 1.16930 1.18292 1.20057 1.23146 1.00788 0.89664 0.88526 0.95257 0.89101 0.97549 0.93053 0.85721 0.90133 0.94656 0.81350 0.79259 0.81943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.90 8.94 37.16 0.33 -3.56 15 2 C 0.21 5.03 2.57 -68.86 -0.18 4.85 15 3 H 0.04 0.94 7.80 -51.93 -0.40 0.53 15 4 C -0.50 -13.36 8.84 -34.44 -0.30 -13.66 15 5 H 0.06 1.74 7.81 -52.48 -0.41 1.33 15 6 C 0.06 1.51 5.30 -17.82 -0.09 1.41 15 7 N -0.90 -25.08 11.32 55.43 0.63 -24.45 15 8 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 15 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 12 N -0.68 -13.47 6.22 -109.22 -0.68 -14.15 15 13 C 0.10 1.64 5.66 -4.97 -0.03 1.61 15 14 C -0.17 -2.41 5.43 -104.35 -0.57 -2.98 15 15 C 0.16 2.32 11.01 -17.20 -0.19 2.13 15 16 N -0.52 -7.47 10.44 -14.58 -0.15 -7.63 15 17 C 0.28 3.60 12.29 -92.15 -1.13 2.47 15 18 N -0.52 -7.31 10.44 -14.58 -0.15 -7.46 15 19 C 0.14 1.98 11.01 -17.20 -0.19 1.79 15 20 H 0.03 0.64 8.13 -51.93 -0.42 0.22 15 21 H 0.09 2.34 6.07 -51.93 -0.32 2.02 15 22 H 0.01 0.11 7.45 -51.93 -0.39 -0.27 15 23 H 0.26 6.94 8.31 -40.82 -0.34 6.60 15 24 H 0.33 6.26 8.46 -39.29 -0.33 5.93 15 25 H 0.08 1.29 8.01 -51.93 -0.42 0.88 15 26 H 0.04 0.55 7.40 -51.93 -0.38 0.17 15 27 H 0.17 2.16 8.06 -52.48 -0.42 1.74 15 28 H 0.19 1.79 8.06 -52.49 -0.42 1.37 15 29 H 0.16 1.89 8.06 -52.49 -0.42 1.47 15 LS Contribution 253.95 15.07 3.83 3.83 Total: -1.00 -28.90 253.95 -7.38 -36.28 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -3.48 Total: 3.39 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -2.35 Total: -5.94 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.36 Total: -53.70 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -28.90 -7.38 -36.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379409965.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.257 kcal (2) G-P(sol) polarization free energy of solvation -28.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds