Wall clock time and date at job start Mon Mar 30 2020 02:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08990 * 109.47272 * 2 1 4 4 C 1.50700 * 109.47051 * 120.00091 * 2 1 3 5 5 H 1.08008 * 120.00048 * 120.00057 * 4 2 1 6 6 C 1.37879 * 120.00228 * 300.00131 * 4 2 1 7 7 N 1.31517 * 119.99712 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99967 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47361 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46890 * 120.00229 * 8 6 4 11 11 H 1.48506 * 109.46955 * 239.99575 * 8 6 4 12 12 N 1.46900 * 109.46992 * 239.99925 * 2 1 3 13 13 C 1.46901 * 110.99866 * 85.00322 * 12 2 1 14 14 C 1.50705 * 109.46937 * 179.97438 * 13 12 2 15 15 C 1.38596 * 120.79970 * 269.97383 * 14 13 12 16 16 N 1.32333 * 119.10260 * 180.02562 * 15 14 13 17 17 C 1.31794 * 120.81891 * 359.97438 * 16 15 14 18 18 N 1.31794 * 121.75681 * 0.02562 * 17 16 15 19 19 C 1.32338 * 120.81727 * 359.97438 * 18 17 16 20 20 H 1.09005 * 109.46905 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.46658 * 300.00093 * 1 2 3 22 22 H 1.08994 * 109.47147 * 60.00036 * 1 2 3 23 23 H 0.96993 * 120.00028 * 180.02562 * 7 6 4 24 24 H 1.00904 * 111.00396 * 321.04685 * 12 2 1 25 25 H 1.08994 * 109.47403 * 59.99493 * 13 12 2 26 26 H 1.09006 * 109.47039 * 299.99458 * 13 12 2 27 27 H 1.08003 * 120.44608 * 0.04351 * 15 14 13 28 28 H 1.07999 * 119.12139 * 179.97438 * 17 16 15 29 29 H 1.07992 * 120.44490 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9436 0.8301 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.1474 -2.2864 3.6037 10 1 3.1472 -0.1859 4.8161 11 1 1.1678 -1.5867 4.8165 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5886 -0.5216 -3.5557 15 6 3.9448 -0.5837 -3.8345 16 7 4.3521 -1.2459 -4.9054 17 6 3.4863 -1.8414 -5.7008 18 7 2.1898 -1.8035 -5.4673 19 6 1.7089 -1.1603 -4.4155 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 0.7095 1.1617 3.4844 24 1 1.4496 -1.4980 -1.4101 25 1 2.7588 1.0462 -2.1182 26 1 1.0871 0.6163 -2.5526 27 1 4.6595 -0.0984 -3.1863 28 1 3.8489 -2.3740 -6.5676 29 1 0.6454 -1.1334 -4.2296 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379409965.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:46 Heat of formation + Delta-G solvation = 25.036280 kcal Electronic energy + Delta-G solvation = -12885.341226 eV Core-core repulsion = 10614.622479 eV Total energy + Delta-G solvation = -2270.718746 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.91487 -37.98401 -35.08132 -34.62957 -33.18159 -30.00124 -27.25048 -26.49799 -25.51088 -23.24881 -22.12783 -18.61706 -18.47809 -18.37303 -16.84006 -16.27959 -15.83563 -15.25809 -14.80356 -14.57943 -14.44776 -14.41617 -13.57423 -13.32976 -12.89875 -12.71837 -12.47713 -12.16216 -12.06592 -11.77392 -11.64444 -11.02955 -10.47977 -10.43249 -10.19589 -8.99723 -8.09310 -6.19753 -0.05191 0.10967 1.42282 1.45116 1.56495 2.44700 2.81367 3.19683 3.28209 3.29787 3.65354 3.73197 3.87925 4.04738 4.53633 4.64627 4.70960 4.82914 4.91078 5.04833 5.11211 5.42087 5.46627 5.71379 5.82234 5.98418 6.27724 6.61533 6.77487 6.94329 7.10530 7.50219 8.96048 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.056914 B = 0.006647 C = 0.006284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.855582 B = 4211.686291 C = 4454.944097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.215 3.785 3 H 0.010 0.990 4 C -0.514 4.514 5 H 0.052 0.948 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.957 3.043 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.281 1.281 12 N -0.683 5.683 13 C 0.110 3.890 14 C -0.176 4.176 15 C 0.157 3.843 16 N -0.537 5.537 17 C 0.278 3.722 18 N -0.535 5.535 19 C 0.148 3.852 20 H 0.031 0.969 21 H 0.061 0.939 22 H 0.031 0.969 23 H 0.261 0.739 24 H 0.331 0.669 25 H 0.077 0.923 26 H 0.045 0.955 27 H 0.176 0.824 28 H 0.223 0.777 29 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.655 -2.244 -12.083 12.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.107 3.893 3 H 0.028 0.972 4 C -0.553 4.553 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.784 3.216 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.207 1.207 12 N -0.313 5.313 13 C -0.021 4.021 14 C -0.180 4.180 15 C -0.008 4.008 16 N -0.250 5.250 17 C -0.010 4.010 18 N -0.248 5.248 19 C -0.018 4.018 20 H 0.050 0.950 21 H 0.080 0.920 22 H 0.050 0.950 23 H 0.070 0.930 24 H 0.148 0.852 25 H 0.095 0.905 26 H 0.063 0.937 27 H 0.194 0.806 28 H 0.239 0.761 29 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 2.593 -2.538 -12.586 13.098 hybrid contribution -1.069 0.336 1.589 1.944 sum 1.524 -2.201 -10.997 11.319 Atomic orbital electron populations 1.22252 0.99755 0.99340 1.00412 1.18972 0.90218 0.93016 0.87107 0.97193 1.21472 1.30285 1.12389 0.91105 0.92937 1.25660 0.95513 0.95874 1.01743 1.69998 1.38053 1.24161 1.23915 0.85517 0.78033 0.78606 0.79493 1.19521 1.20795 1.20729 1.60742 1.58166 1.09368 1.03016 1.20691 0.99743 0.94484 0.87140 1.21648 0.96241 1.01507 0.98635 1.23395 0.94320 0.91232 0.91887 1.68498 1.40823 1.10081 1.05638 1.25556 0.84760 0.92857 0.97806 1.68487 1.17395 1.18709 1.20210 1.23465 1.01657 0.88660 0.88017 0.94985 0.92021 0.94991 0.93015 0.85173 0.90484 0.93658 0.80650 0.76051 0.80075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.15 8.94 71.98 0.64 -6.51 15 2 C 0.22 10.28 2.57 44.17 0.11 10.40 15 3 H 0.01 0.53 7.80 -2.39 -0.02 0.51 15 4 C -0.51 -27.75 8.84 25.60 0.23 -27.53 15 5 H 0.05 2.88 7.81 -2.91 -0.02 2.86 15 6 C 0.01 0.56 5.30 84.65 0.45 1.01 15 7 N -0.92 -51.79 11.32 21.45 0.24 -51.55 15 8 Si 0.96 43.36 29.54 68.60 2.03 45.39 15 9 H -0.27 -12.07 7.11 99.48 0.71 -11.36 15 10 H -0.28 -12.57 7.11 99.48 0.71 -11.87 15 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 15 12 N -0.68 -26.59 6.22 -499.45 -3.11 -29.69 15 13 C 0.11 3.39 5.66 85.56 0.48 3.88 15 14 C -0.18 -4.79 5.43 -19.69 -0.11 -4.89 15 15 C 0.16 4.28 11.01 84.70 0.93 5.21 15 16 N -0.54 -14.37 10.44 -200.05 -2.09 -16.46 15 17 C 0.28 6.57 12.29 180.88 2.22 8.79 15 18 N -0.53 -13.69 10.44 -200.05 -2.09 -15.77 15 19 C 0.15 3.72 11.01 84.70 0.93 4.65 15 20 H 0.03 1.38 8.13 -2.38 -0.02 1.36 15 21 H 0.06 3.17 6.07 -2.39 -0.01 3.16 15 22 H 0.03 1.23 7.45 -2.39 -0.02 1.22 15 23 H 0.26 13.97 8.31 -92.71 -0.77 13.20 15 24 H 0.33 12.30 8.46 -89.69 -0.76 11.54 15 25 H 0.08 2.43 8.01 -2.39 -0.02 2.41 15 26 H 0.05 1.32 7.40 -2.38 -0.02 1.31 15 27 H 0.18 4.35 8.06 -2.91 -0.02 4.32 15 28 H 0.22 3.51 8.06 -2.91 -0.02 3.49 15 29 H 0.18 3.74 8.06 -2.91 -0.02 3.71 15 Total: -1.00 -60.26 253.95 1.27 -58.98 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.39 Total: 14.10 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 5.90 Total: -4.99 kcal Atomic # 7 Polarization: -106.44 SS G_CDS: -7.04 Total: -113.48 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -60.26 1.27 -58.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379409965.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.017 kcal (2) G-P(sol) polarization free energy of solvation -60.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds