Wall clock time and date at job start Mon Mar 30 2020 02:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00357 * 2 1 4 4 H 1.48503 * 109.47009 * 239.99786 * 3 2 1 5 5 H 1.48504 * 109.47282 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47457 * 119.99553 * 3 2 1 7 7 C 1.37873 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00325 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47270 * 179.97438 * 9 7 2 11 11 N 1.46910 * 109.46787 * 179.97438 * 10 9 7 12 12 C 1.46902 * 110.99389 * 180.02562 * 11 10 9 13 13 H 1.08996 * 110.63992 * 36.41481 * 12 11 10 14 14 C 1.54839 * 110.57996 * 273.54569 * 12 11 10 15 15 C 1.56195 * 103.81793 * 241.53110 * 14 12 11 16 16 H 1.09001 * 116.28514 * 196.79168 * 15 14 12 17 17 C 1.53360 * 104.07913 * 67.44721 * 15 14 12 18 18 C 1.33832 * 107.33894 * 289.26284 * 17 15 14 19 19 C 1.53360 * 108.71023 * 0.51703 * 18 17 15 20 20 H 1.09000 * 116.98628 * 199.54173 * 19 18 17 21 21 C 1.57252 * 99.79640 * 326.31364 * 19 18 17 22 22 H 0.97008 * 119.99494 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47156 * 59.99216 * 9 7 2 24 24 H 1.09005 * 109.46870 * 299.99723 * 9 7 2 25 25 H 1.09005 * 109.47194 * 60.00022 * 10 9 7 26 26 H 1.08993 * 109.47410 * 299.99512 * 10 9 7 27 27 H 1.00898 * 110.99836 * 303.95535 * 11 10 9 28 28 H 1.09002 * 110.58102 * 122.90506 * 14 12 11 29 29 H 1.08997 * 110.58543 * 0.15637 * 14 12 11 30 30 H 1.08006 * 125.78577 * 109.91217 * 17 15 14 31 31 H 1.08000 * 125.50522 * 180.16614 * 18 17 15 32 32 H 1.09003 * 112.52679 * 293.36871 * 21 19 18 33 33 H 1.09004 * 112.60876 * 165.52284 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5105 -4.9343 0.0012 12 6 2.4350 -6.0759 0.0018 13 1 3.3146 -5.8576 0.6072 14 6 2.8472 -6.4432 -1.4448 15 6 2.3261 -7.9051 -1.6215 16 1 2.7448 -8.4694 -2.4547 17 6 0.7994 -7.7626 -1.5951 18 6 0.4490 -7.4562 -0.3404 19 6 1.7174 -7.3683 0.5171 20 1 1.5916 -7.4527 1.5965 21 6 2.5889 -8.4762 -0.1800 22 1 -0.4850 0.8402 -0.0004 23 1 0.6245 -2.5571 -0.8895 24 1 0.6239 -2.5567 0.8904 25 1 2.8718 -3.6044 0.8906 26 1 2.8717 -3.6045 -0.8894 27 1 0.8743 -4.9841 0.7827 28 1 3.9310 -6.4068 -1.5553 29 1 2.3675 -5.7763 -2.1611 30 1 0.1378 -7.8984 -2.4380 31 1 -0.5605 -7.2924 0.0067 32 1 2.1778 -9.4768 -0.0460 33 1 3.6398 -8.4235 0.1048 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382003157.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:15 Heat of formation + Delta-G solvation = 4.965656 kcal Electronic energy + Delta-G solvation = -13324.305760 eV Core-core repulsion = 11156.257030 eV Total energy + Delta-G solvation = -2168.048731 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.39967 -36.86361 -34.81518 -31.66653 -30.51276 -29.14397 -27.60935 -25.57105 -22.57151 -21.64511 -21.06009 -18.78185 -18.37723 -17.53287 -16.94743 -16.42886 -15.62939 -15.45544 -14.40713 -14.35388 -13.67869 -13.41708 -13.20249 -12.91167 -12.74357 -12.39721 -12.26434 -12.16984 -12.05662 -11.84849 -11.73950 -11.40583 -11.20894 -11.07641 -10.57721 -9.62176 -9.19423 -8.21757 -6.33914 1.39017 1.42716 1.44094 1.50753 2.39481 3.11374 3.31557 3.61788 3.66687 3.89097 4.20018 4.36278 4.40994 4.44433 4.49335 4.62661 4.67739 4.77521 4.92107 4.99786 5.04063 5.10224 5.19148 5.33625 5.34986 5.43188 5.61194 5.66813 5.78198 6.14288 6.15836 6.33585 6.58086 6.83220 7.35523 8.90330 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.069373 B = 0.006018 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.517234 B = 4651.866093 C = 4777.238579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.034 3.966 10 C 0.086 3.914 11 N -0.683 5.683 12 C 0.077 3.923 13 H 0.044 0.956 14 C -0.113 4.113 15 C -0.072 4.072 16 H 0.114 0.886 17 C -0.180 4.180 18 C -0.157 4.157 19 C -0.080 4.080 20 H 0.107 0.893 21 C -0.107 4.107 22 H 0.264 0.736 23 H -0.009 1.009 24 H -0.010 1.010 25 H 0.016 0.984 26 H 0.052 0.948 27 H 0.336 0.664 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.131 0.869 31 H 0.121 0.879 32 H 0.087 0.913 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.244 -16.489 -0.402 17.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.586 4.586 8 H 0.078 0.922 9 C -0.003 4.003 10 C -0.042 4.042 11 N -0.313 5.313 12 C -0.032 4.032 13 H 0.061 0.939 14 C -0.151 4.151 15 C -0.090 4.090 16 H 0.132 0.868 17 C -0.198 4.198 18 C -0.175 4.175 19 C -0.099 4.099 20 H 0.125 0.875 21 C -0.145 4.145 22 H 0.073 0.927 23 H 0.010 0.990 24 H 0.009 0.991 25 H 0.034 0.966 26 H 0.071 0.929 27 H 0.154 0.846 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.148 0.852 31 H 0.138 0.862 32 H 0.106 0.894 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.025 -16.368 -1.086 17.156 hybrid contribution 0.194 1.363 0.830 1.608 sum 5.219 -15.005 -0.256 15.889 Atomic orbital electron populations 1.70109 1.07885 1.27923 1.51283 1.25997 0.95786 1.03449 0.94493 0.85452 0.78242 0.77823 0.79221 1.19172 1.20643 1.19042 1.21591 0.93497 0.92328 1.51203 0.92243 1.18894 0.94248 0.92348 0.94855 1.21773 0.95499 0.88734 0.98242 1.60601 1.19829 1.01296 1.49613 1.22898 0.93617 0.90005 0.96705 0.93858 1.22797 0.99852 0.96579 0.95911 1.22933 0.92957 0.94754 0.98342 0.86812 1.24670 0.96444 1.01690 0.96961 1.24429 0.97690 0.99507 0.95859 1.23184 0.93875 0.94002 0.98809 0.87490 1.23983 0.99806 0.97666 0.93045 0.92686 0.99016 0.99126 0.96633 0.92900 0.84593 0.91069 0.93057 0.85150 0.86159 0.89396 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.08 13.29 21.45 0.28 -57.80 16 2 C 0.00 0.04 5.46 84.65 0.46 0.51 16 3 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.55 -32.21 9.11 25.60 0.23 -31.97 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.88 5.23 29.85 0.16 2.04 16 10 C 0.09 3.82 5.48 86.30 0.47 4.30 16 11 N -0.68 -25.40 5.48 -481.98 -2.64 -28.04 16 12 C 0.08 2.28 2.93 46.78 0.14 2.42 16 13 H 0.04 1.29 7.89 -2.39 -0.02 1.27 16 14 C -0.11 -3.12 5.97 32.33 0.19 -2.93 16 15 C -0.07 -1.56 5.20 -8.06 -0.04 -1.60 16 16 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 17 C -0.18 -4.42 10.30 25.55 0.26 -4.16 16 18 C -0.16 -4.01 9.38 25.55 0.24 -3.77 16 19 C -0.08 -1.90 4.88 -7.94 -0.04 -1.94 16 20 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 21 C -0.11 -2.04 6.69 33.59 0.22 -1.82 16 22 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 23 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 24 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 25 H 0.02 0.67 8.08 -2.38 -0.02 0.65 16 26 H 0.05 2.36 8.13 -2.39 -0.02 2.34 16 27 H 0.34 12.28 8.38 -89.70 -0.75 11.53 16 28 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.05 1.71 7.91 -2.39 -0.02 1.69 16 30 H 0.13 2.96 8.06 -2.91 -0.02 2.93 16 31 H 0.12 3.03 8.06 -2.91 -0.02 3.00 16 32 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 Total: -1.00 -65.23 269.80 2.29 -62.94 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.32 Total: 14.83 kcal Atomic # 6 Polarization: -41.22 SS G_CDS: 2.30 Total: -38.92 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -2.36 Total: -85.84 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -65.23 2.29 -62.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382003157.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.906 kcal (2) G-P(sol) polarization free energy of solvation -65.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds