Wall clock time and date at job start Mon Mar 30 2020 02:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 5 5 C 1.46897 * 111.00355 * 84.99974 * 4 2 1 6 6 C 1.50696 * 109.47624 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99752 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00230 * 180.02562 * 6 5 4 9 9 N 1.31510 * 119.99895 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00022 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46670 * 90.00128 * 10 8 6 12 12 H 1.48499 * 109.47157 * 210.00018 * 10 8 6 13 13 H 1.48494 * 109.46908 * 330.00175 * 10 8 6 14 14 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 15 15 C 1.38624 * 120.44856 * 274.72099 * 14 2 1 16 16 C 1.38571 * 118.39962 * 179.79995 * 15 14 2 17 17 N 1.32353 * 119.10243 * 0.47675 * 16 15 14 18 18 C 1.31779 * 120.82133 * 359.74350 * 17 16 15 19 19 N 1.31807 * 121.75228 * 0.02562 * 18 17 16 20 20 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 22 22 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 23 23 H 1.00898 * 111.00393 * 208.95929 * 4 2 1 24 24 H 1.09006 * 109.46948 * 300.00869 * 5 4 2 25 25 H 1.09006 * 109.47033 * 59.99701 * 5 4 2 26 26 H 0.97003 * 120.00066 * 179.97438 * 9 8 6 27 27 H 1.07999 * 120.79704 * 0.02864 * 15 14 2 28 28 H 1.07998 * 120.44681 * 180.22065 * 16 15 14 29 29 H 1.07996 * 119.12191 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0826 0.2225 -2.3469 6 6 2.5887 -0.5215 -3.5557 7 1 2.8383 -1.5695 -3.4793 8 6 2.7331 0.1355 -4.7591 9 7 2.4296 1.4118 -4.8520 10 14 3.3598 -0.7870 -6.2577 11 1 2.2108 -1.3690 -6.9968 12 1 4.0951 0.1503 -7.1443 13 1 4.2715 -1.8756 -5.8232 14 6 2.0323 -0.7104 1.2305 15 6 2.1737 -0.0265 2.4280 16 6 2.6352 -0.7224 3.5339 17 7 2.9326 -2.0060 3.4087 18 6 2.7900 -2.6225 2.2528 19 7 2.3496 -1.9940 1.1812 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 2.9173 -1.1206 -1.0287 24 1 1.0872 0.6163 -2.5525 25 1 2.7590 1.0462 -2.1182 26 1 2.5316 1.8742 -5.6986 27 1 1.9267 1.0225 2.4982 28 1 2.7544 -0.2231 4.4841 29 1 3.0405 -3.6706 2.1817 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395912573.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:03 Heat of formation + Delta-G solvation = 23.640312 kcal Electronic energy + Delta-G solvation = -12895.088009 eV Core-core repulsion = 10624.308729 eV Total energy + Delta-G solvation = -2270.779280 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.98082 -37.99325 -35.21046 -34.08756 -33.12083 -30.93403 -28.16504 -25.91132 -25.29420 -23.74033 -21.84414 -18.90332 -18.43815 -17.66274 -16.64542 -16.38906 -16.15488 -15.77590 -15.34835 -14.77228 -14.37355 -14.21416 -13.64081 -13.23791 -13.09365 -12.75625 -12.49182 -12.25234 -11.95789 -11.75942 -11.59366 -11.30684 -10.66459 -10.52767 -10.13394 -9.10901 -8.22953 -6.33233 -0.04951 0.14718 1.40873 1.42637 1.53948 2.39970 2.84097 3.02867 3.10529 3.26066 3.36043 3.79623 4.05897 4.20152 4.28491 4.38934 4.63433 4.72216 4.85215 4.93281 5.10375 5.24765 5.30019 5.46931 5.62000 6.00141 6.10079 6.45690 6.69636 6.87438 7.18721 7.37392 8.88571 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.053857 B = 0.006738 C = 0.006306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.769336 B = 4154.328823 C = 4439.473692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.123 3.877 3 H 0.057 0.943 4 N -0.673 5.673 5 C 0.209 3.791 6 C -0.536 4.536 7 H 0.059 0.941 8 C 0.004 3.996 9 N -0.932 5.932 10 Si 0.971 3.029 11 H -0.273 1.273 12 H -0.280 1.280 13 H -0.266 1.266 14 C 0.163 3.837 15 C -0.219 4.219 16 C 0.149 3.851 17 N -0.540 5.540 18 C 0.284 3.716 19 N -0.529 5.529 20 H 0.050 0.950 21 H 0.083 0.917 22 H 0.050 0.950 23 H 0.334 0.666 24 H 0.009 0.991 25 H -0.039 1.039 26 H 0.266 0.734 27 H 0.174 0.826 28 H 0.208 0.792 29 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.595 -2.226 15.336 15.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.012 3.988 3 H 0.075 0.925 4 N -0.304 5.304 5 C 0.081 3.919 6 C -0.575 4.575 7 H 0.078 0.922 8 C -0.195 4.195 9 N -0.572 5.572 10 Si 0.796 3.204 11 H -0.198 1.198 12 H -0.205 1.205 13 H -0.191 1.191 14 C 0.017 3.983 15 C -0.241 4.241 16 C -0.016 4.016 17 N -0.254 5.254 18 C -0.004 4.004 19 N -0.244 5.244 20 H 0.070 0.930 21 H 0.102 0.898 22 H 0.069 0.931 23 H 0.152 0.848 24 H 0.027 0.973 25 H -0.021 1.021 26 H 0.074 0.926 27 H 0.191 0.809 28 H 0.224 0.776 29 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -0.990 -3.294 14.975 15.365 hybrid contribution 0.779 1.192 -0.797 1.632 sum -0.212 -2.102 14.177 14.334 Atomic orbital electron populations 1.21667 0.92259 1.02004 1.02126 1.20594 0.97269 0.94634 0.86295 0.92506 1.60520 1.33306 1.33278 1.03329 1.19290 0.94350 0.89866 0.88356 1.21518 1.43728 0.96913 0.95296 0.92235 1.25899 0.95581 0.95775 1.02195 1.70072 1.49685 1.10502 1.26945 0.85353 0.78526 0.78271 0.78269 1.19815 1.20489 1.19050 1.21875 0.90727 0.90300 0.95398 1.23025 1.03038 1.04325 0.93739 1.23843 0.88686 0.89333 0.99742 1.68478 1.17771 1.11716 1.27483 1.25476 0.90427 1.01629 0.82851 1.68235 1.12653 1.10288 1.33183 0.93038 0.89817 0.93086 0.84790 0.97337 1.02120 0.92561 0.80859 0.77567 0.76834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.92 9.40 71.98 0.68 -3.25 15 2 C 0.12 4.38 2.90 44.17 0.13 4.51 15 3 H 0.06 2.01 7.78 -2.39 -0.02 2.00 15 4 N -0.67 -30.45 6.06 -499.45 -3.03 -33.48 15 5 C 0.21 11.36 5.24 85.56 0.45 11.80 15 6 C -0.54 -31.38 9.32 25.60 0.24 -31.15 15 7 H 0.06 3.45 7.81 -2.91 -0.02 3.43 15 8 C 0.00 0.22 5.46 84.65 0.46 0.68 15 9 N -0.93 -56.43 13.29 21.45 0.28 -56.15 15 10 Si 0.97 45.01 29.54 68.60 2.03 47.04 15 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 15 12 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 13 H -0.27 -11.93 7.11 99.48 0.71 -11.22 15 14 C 0.16 4.99 5.73 42.58 0.24 5.23 15 15 C -0.22 -4.86 9.88 22.44 0.22 -4.64 15 16 C 0.15 2.92 11.30 84.69 0.96 3.87 15 17 N -0.54 -13.07 10.44 -200.06 -2.09 -15.16 15 18 C 0.28 7.49 12.29 180.89 2.22 9.71 15 19 N -0.53 -17.16 9.44 -188.07 -1.78 -18.93 15 20 H 0.05 1.74 8.14 -2.39 -0.02 1.72 15 21 H 0.08 2.04 8.14 -2.39 -0.02 2.02 15 22 H 0.05 1.81 7.45 -2.39 -0.02 1.79 15 23 H 0.33 15.30 7.87 -89.70 -0.71 14.60 15 24 H 0.01 0.50 7.44 -2.38 -0.02 0.48 15 25 H -0.04 -2.24 8.06 -2.38 -0.02 -2.26 15 26 H 0.27 15.04 8.31 -92.71 -0.77 14.27 15 27 H 0.17 2.75 8.06 -2.91 -0.02 2.73 15 28 H 0.21 2.15 8.06 -2.91 -0.02 2.13 15 29 H 0.22 4.33 8.06 -2.91 -0.02 4.31 15 Total: -1.00 -68.73 256.76 1.46 -67.27 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.44 Total: 12.62 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 5.60 Total: -3.22 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -6.61 Total: -123.71 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -68.73 1.46 -67.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395912573.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.913 kcal (2) G-P(sol) polarization free energy of solvation -68.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds