Wall clock time and date at job start Mon Mar 30 2020 02:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99918 * 2 1 4 4 H 1.48500 * 109.47356 * 95.20051 * 3 2 1 5 5 H 1.48498 * 109.47297 * 215.20145 * 3 2 1 6 6 H 1.48502 * 109.47346 * 335.20273 * 3 2 1 7 7 C 1.37870 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00172 * 2.80958 * 7 2 1 9 9 C 1.50695 * 119.99965 * 182.80324 * 7 2 1 10 10 C 1.52998 * 115.55327 * 272.02619 * 9 7 2 11 11 S 1.81404 * 109.47084 * 294.80262 * 10 9 7 12 12 O 1.42098 * 110.54080 * 286.53856 * 11 10 9 13 13 O 1.42098 * 110.54185 * 63.28922 * 11 10 9 14 14 F 1.61003 * 104.44971 * 174.91469 * 11 10 9 15 15 C 1.53001 * 117.49913 * 126.35475 * 9 7 2 16 16 C 1.53004 * 117.50032 * 57.69705 * 9 7 2 17 17 H 0.97002 * 119.99734 * 359.97438 * 1 2 3 18 18 H 1.08999 * 109.47249 * 54.79958 * 10 9 7 19 19 H 1.09002 * 109.47805 * 174.80121 * 10 9 7 20 20 H 1.09003 * 117.49640 * 0.02562 * 15 9 7 21 21 H 1.09007 * 117.50030 * 145.02240 * 15 9 7 22 22 H 1.09001 * 117.49914 * 214.98159 * 16 9 7 23 23 H 1.08999 * 117.49583 * 359.97438 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6066 1.9830 1.3943 5 1 3.4874 1.4745 -0.8071 6 1 1.3960 2.6819 -0.5872 7 6 2.0045 -1.1940 0.0005 8 1 1.4655 -2.1288 -0.0449 9 6 3.5101 -1.1948 0.0644 10 6 4.2279 -1.1132 -1.2843 11 16 3.8811 -2.6121 -2.2455 12 8 4.5953 -3.7204 -1.7158 13 8 2.4938 -2.7067 -2.5384 14 9 4.5711 -2.3414 -3.6748 15 6 4.1701 -2.0256 1.1667 16 6 4.1670 -0.4976 1.2574 17 1 -0.4850 0.8401 0.0004 18 1 3.8735 -0.2401 -1.8323 19 1 5.3020 -1.0275 -1.1198 20 1 3.5152 -2.5720 1.8454 21 1 5.1158 -2.5138 0.9311 22 1 5.1107 0.0189 1.0815 23 1 3.5101 -0.0380 1.9959 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000675065035.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:11 Heat of formation + Delta-G solvation = -106.118740 kcal Electronic energy + Delta-G solvation = -12346.940923 eV Core-core repulsion = 9816.674007 eV Total energy + Delta-G solvation = -2530.266916 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 208.036 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -47.59141 -37.29640 -36.82441 -35.65901 -32.24803 -28.84292 -25.66182 -21.86985 -20.19845 -19.18022 -17.30894 -17.00679 -16.23989 -15.80230 -15.07810 -14.04366 -13.91542 -13.79445 -13.11954 -12.76155 -12.56133 -12.24016 -11.77380 -11.65557 -11.38235 -11.11042 -10.78557 -10.49650 -10.31134 -9.82026 -9.30551 -8.75989 -8.66060 -6.23835 -4.32659 0.34013 3.15843 3.24359 3.27304 3.35549 3.86850 4.26759 4.49028 4.64270 4.90169 5.22876 5.46388 5.75377 5.88455 6.00214 6.30692 6.49434 6.71946 6.93620 7.47241 8.28663 8.84009 9.35722 10.87301 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.039195 B = 0.015044 C = 0.013622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.209375 B = 1860.818801 C = 2055.076625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.087 3.913 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.262 1.262 6 H -0.291 1.291 7 C -0.508 4.508 8 H 0.093 0.907 9 C -0.005 4.005 10 C -0.575 4.575 11 S 2.567 3.433 12 O -0.948 6.948 13 O -0.905 6.905 14 F -0.501 7.501 15 C -0.179 4.179 16 C -0.180 4.180 17 H 0.268 0.732 18 H 0.138 0.862 19 H 0.119 0.881 20 H 0.099 0.901 21 H 0.084 0.916 22 H 0.077 0.923 23 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.534 0.100 -2.266 9.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.118 4.118 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.186 1.186 6 H -0.217 1.217 7 C -0.545 4.545 8 H 0.111 0.889 9 C -0.007 4.007 10 C -0.706 4.706 11 S 2.662 3.338 12 O -0.947 6.947 13 O -0.904 6.904 14 F -0.500 7.500 15 C -0.216 4.216 16 C -0.219 4.219 17 H 0.078 0.922 18 H 0.156 0.844 19 H 0.137 0.863 20 H 0.117 0.883 21 H 0.103 0.897 22 H 0.096 0.904 23 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.196 -0.429 -2.714 9.598 hybrid contribution 0.610 1.634 0.245 1.761 sum 9.806 1.205 -2.469 10.184 Atomic orbital electron populations 1.69883 1.06372 1.27453 1.47713 1.24977 0.94581 0.98957 0.93266 0.86940 0.80151 0.83443 0.79133 1.19775 1.18632 1.21717 1.20357 0.85283 0.95737 1.53122 0.88944 1.18883 0.95216 1.03387 0.83247 1.30340 1.08713 1.18973 1.12621 1.07799 0.75122 0.78613 0.72256 1.93667 1.74296 1.48552 1.78181 1.93771 1.29268 1.85653 1.81672 1.93620 1.91094 1.96116 1.69170 1.23112 1.01531 0.93268 1.03739 1.23022 1.01161 0.95099 1.02596 0.92150 0.84430 0.86263 0.88288 0.89716 0.90422 0.88538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.79 13.96 55.43 0.77 -25.02 14 2 C 0.09 2.38 5.47 -17.82 -0.10 2.28 14 3 Si 0.88 20.09 24.88 -169.99 -4.23 15.86 14 4 H -0.27 -6.06 6.99 56.52 0.39 -5.66 14 5 H -0.26 -5.46 5.84 56.52 0.33 -5.13 14 6 H -0.29 -6.76 7.11 56.52 0.40 -6.35 14 7 C -0.51 -13.41 8.30 -34.45 -0.29 -13.69 14 8 H 0.09 2.71 8.06 -52.49 -0.42 2.28 14 9 C 0.00 -0.10 0.82 -155.66 -0.13 -0.22 14 10 C -0.57 -10.18 5.83 37.16 0.22 -9.96 14 11 S 2.57 46.90 6.32 -107.50 -0.68 46.22 14 12 O -0.95 -18.51 18.16 -57.54 -1.04 -19.55 14 13 O -0.91 -20.41 17.23 -57.54 -0.99 -21.40 14 14 F -0.50 -8.08 17.85 2.25 0.04 -8.04 14 15 C -0.18 -3.37 9.96 -26.69 -0.27 -3.63 14 16 C -0.18 -3.45 7.63 -26.69 -0.20 -3.65 14 17 H 0.27 7.34 8.31 -40.82 -0.34 7.00 14 18 H 0.14 2.36 6.57 -51.92 -0.34 2.02 14 19 H 0.12 1.62 8.09 -51.92 -0.42 1.19 14 20 H 0.10 1.87 8.14 -51.93 -0.42 1.45 14 21 H 0.08 1.39 8.14 -51.93 -0.42 0.96 14 22 H 0.08 1.28 8.14 -51.93 -0.42 0.86 14 23 H 0.10 1.95 7.16 -51.93 -0.37 1.58 14 LS Contribution 218.96 15.07 3.30 3.30 Total: -1.00 -31.67 218.96 -5.63 -37.30 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -2.04 Total: 0.21 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: -0.76 Total: -28.88 kcal Atomic # 7 Polarization: -25.79 SS G_CDS: 0.77 Total: -25.02 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -2.04 Total: -40.95 kcal Atomic # 9 Polarization: -8.08 SS G_CDS: 0.04 Total: -8.04 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.23 Total: 15.86 kcal Atomic # 16 Polarization: 46.90 SS G_CDS: -0.68 Total: 46.22 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -31.67 -5.63 -37.30 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000675065035.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.815 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds