Wall clock time and date at job start Mon Mar 30 2020 02:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99920 * 2 1 4 4 H 1.48503 * 109.47056 * 239.99605 * 3 2 1 5 5 H 1.48490 * 109.47140 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47002 * 120.00021 * 3 2 1 7 7 C 1.37881 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99947 * 175.02310 * 7 2 1 9 9 C 1.50701 * 120.00096 * 355.01939 * 7 2 1 10 10 C 1.52999 * 115.55377 * 279.36877 * 9 7 2 11 11 S 1.81403 * 109.46878 * 320.01682 * 10 9 7 12 12 O 1.42101 * 109.47103 * 76.37758 * 11 10 9 13 13 Cl 2.01998 * 103.00184 * 185.43433 * 11 10 9 14 14 C 1.53001 * 117.49647 * 65.03225 * 9 7 2 15 15 C 1.52996 * 60.03026 * 107.50155 * 14 9 7 16 16 H 0.96994 * 120.00029 * 5.00294 * 1 2 3 17 17 H 1.08998 * 109.47019 * 80.01328 * 10 9 7 18 18 H 1.08999 * 109.47362 * 200.01827 * 10 9 7 19 19 H 1.08992 * 117.50186 * 215.00185 * 14 9 7 20 20 H 1.09008 * 117.49938 * 0.02562 * 14 9 7 21 21 H 1.09005 * 117.50220 * 107.50286 * 15 14 9 22 22 H 1.09001 * 117.50062 * 252.52198 * 15 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0815 -1.1958 -0.0806 9 6 1.2554 -2.4967 0.1144 10 6 0.8354 -2.8949 1.5307 11 16 2.1704 -2.4950 2.6921 12 8 2.1810 -1.0955 2.9379 13 17 1.4980 -3.2578 4.4375 14 6 0.3165 -2.8743 -1.0331 15 6 1.6398 -3.6203 -0.8514 16 1 -0.4850 0.8368 -0.0733 17 1 -0.0650 -2.3478 1.8100 18 1 0.6347 -3.9657 1.5627 19 1 -0.6002 -3.4063 -0.7791 20 1 0.2410 -2.1807 -1.8707 21 1 1.5938 -4.6433 -0.4777 22 1 2.4348 -3.4171 -1.5688 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000675071793.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:50 Heat of formation + Delta-G solvation = -62.011160 kcal Electronic energy + Delta-G solvation = -10190.401196 eV Core-core repulsion = 8090.383303 eV Total energy + Delta-G solvation = -2100.017893 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 208.007 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.41715 -37.24536 -36.41243 -34.08937 -29.60825 -27.47823 -22.85086 -21.37610 -19.48249 -18.11599 -17.25272 -16.76290 -16.11588 -15.36918 -15.14523 -14.71689 -13.67895 -13.45266 -13.00436 -12.85749 -12.49746 -12.44855 -12.14492 -11.95794 -11.88980 -11.40763 -10.97785 -10.47504 -10.23436 -9.52056 -8.23145 -6.38711 -0.45032 1.20940 1.31711 1.37912 1.43342 2.35241 2.43554 3.12169 3.46693 4.19650 4.37956 4.71756 4.74063 4.98775 5.12254 5.29455 5.49743 5.69910 5.74129 6.23918 6.74212 7.38399 8.83190 Molecular weight = 208.01amu Principal moments of inertia in cm(-1) A = 0.032679 B = 0.015640 C = 0.011905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.616582 B = 1789.862896 C = 2351.339588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.046 3.954 3 Si 0.926 3.074 4 H -0.258 1.258 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.533 4.533 8 H 0.070 0.930 9 C 0.016 3.984 10 C -0.394 4.394 11 S 1.424 4.576 12 O -0.818 6.818 13 Cl -0.474 7.474 14 C -0.164 4.164 15 C -0.164 4.164 16 H 0.258 0.742 17 H 0.062 0.938 18 H 0.139 0.861 19 H 0.072 0.928 20 H 0.054 0.946 21 H 0.116 0.884 22 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.291 -9.168 1.581 10.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.157 4.157 3 Si 0.752 3.248 4 H -0.182 1.182 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.572 4.572 8 H 0.088 0.912 9 C 0.014 3.986 10 C -0.534 4.534 11 S 1.529 4.471 12 O -0.816 6.816 13 Cl -0.473 7.473 14 C -0.203 4.203 15 C -0.201 4.201 16 H 0.067 0.933 17 H 0.081 0.919 18 H 0.157 0.843 19 H 0.091 0.909 20 H 0.073 0.927 21 H 0.134 0.866 22 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.737 -8.860 2.232 10.789 hybrid contribution -1.755 2.479 -0.204 3.044 sum 3.982 -6.381 2.029 7.791 Atomic orbital electron populations 1.70053 1.07259 1.27334 1.48979 1.25527 0.95200 1.01830 0.93113 0.86084 0.79224 0.80469 0.78978 1.18193 1.21637 1.20352 1.20884 0.93439 0.90065 1.52761 0.91162 1.18403 1.00829 0.93705 0.85670 1.27318 1.11471 1.07330 1.07319 1.73565 0.99533 0.92333 0.81647 1.93065 1.79411 1.33119 1.76006 1.98844 1.94741 1.90168 1.63558 1.22449 0.93351 1.02632 1.01856 1.23228 0.97580 0.96332 1.02965 0.93292 0.91912 0.84253 0.90906 0.92687 0.86620 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.09 12.85 21.45 0.28 -51.82 14 2 C 0.05 2.54 5.44 84.66 0.46 3.00 14 3 Si 0.93 44.86 29.54 68.60 2.03 46.89 14 4 H -0.26 -11.55 7.11 99.48 0.71 -10.85 14 5 H -0.29 -14.12 7.11 99.48 0.71 -13.41 14 6 H -0.28 -13.91 7.11 99.48 0.71 -13.20 14 7 C -0.53 -26.87 6.92 25.60 0.18 -26.69 14 8 H 0.07 3.39 7.82 -2.91 -0.02 3.37 14 9 C 0.02 0.69 1.66 -52.90 -0.09 0.60 14 10 C -0.39 -15.06 6.11 71.98 0.44 -14.62 14 11 S 1.42 49.66 13.57 -56.49 -0.77 48.89 14 12 O -0.82 -39.61 17.17 -148.98 -2.56 -42.16 14 13 Cl -0.47 -16.04 29.45 -2.72 -0.08 -16.12 14 14 C -0.16 -6.93 9.42 30.59 0.29 -6.64 14 15 C -0.16 -5.57 9.89 30.62 0.30 -5.27 14 16 H 0.26 14.63 8.32 -92.71 -0.77 13.86 14 17 H 0.06 2.89 8.14 -2.39 -0.02 2.87 14 18 H 0.14 4.01 7.95 -2.39 -0.02 3.99 14 19 H 0.07 2.89 8.14 -2.39 -0.02 2.87 14 20 H 0.05 2.62 8.14 -2.38 -0.02 2.60 14 21 H 0.12 2.95 8.09 -2.38 -0.02 2.93 14 22 H 0.09 2.92 8.14 -2.39 -0.02 2.90 14 Total: -1.00 -67.68 228.07 1.69 -65.99 By element: Atomic # 1 Polarization: -3.28 SS G_CDS: 1.21 Total: -2.06 kcal Atomic # 6 Polarization: -51.19 SS G_CDS: 1.58 Total: -49.61 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: 0.28 Total: -51.82 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -2.56 Total: -42.16 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: 49.66 SS G_CDS: -0.77 Total: 48.89 kcal Atomic # 17 Polarization: -16.04 SS G_CDS: -0.08 Total: -16.12 kcal Total: -67.68 1.69 -65.99 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000675071793.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.982 kcal (2) G-P(sol) polarization free energy of solvation -67.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds