Wall clock time and date at job start Mon Mar 30 2020 02:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86790 * 120.00342 * 2 1 4 4 H 1.48505 * 109.47630 * 270.00201 * 3 2 1 5 5 H 1.48506 * 109.47082 * 30.00299 * 3 2 1 6 6 H 1.48502 * 109.47603 * 150.00106 * 3 2 1 7 7 C 1.37882 * 119.99734 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00072 * 173.08069 * 7 2 1 9 9 C 1.50700 * 120.00103 * 353.08206 * 7 2 1 10 10 C 1.53002 * 115.55114 * 84.98407 * 9 7 2 11 11 N 1.46900 * 109.46842 * 65.16894 * 10 9 7 12 12 C 1.46899 * 110.99792 * 174.71023 * 11 10 9 13 13 H 1.09006 * 110.34747 * 35.83003 * 12 11 10 14 14 C 1.51108 * 110.38472 * 273.54533 * 12 11 10 15 15 C 1.30522 * 111.10651 * 257.50982 * 14 12 11 16 16 C 1.51106 * 111.10417 * 359.97438 * 15 14 12 17 17 C 1.54634 * 104.82340 * 343.50827 * 16 15 14 18 18 C 1.52996 * 117.49712 * 230.65479 * 9 7 2 19 19 C 1.53004 * 117.49584 * 299.31310 * 9 7 2 20 20 H 0.97003 * 119.99995 * 5.04712 * 1 2 3 21 21 H 1.09001 * 109.46888 * 305.16647 * 10 9 7 22 22 H 1.08998 * 109.46745 * 185.17058 * 10 9 7 23 23 H 1.00901 * 110.99876 * 298.66048 * 11 10 9 24 24 H 1.07999 * 124.44542 * 77.53304 * 14 12 11 25 25 H 1.08002 * 124.45122 * 180.02562 * 15 14 12 26 26 H 1.09002 * 110.38599 * 102.36846 * 16 15 14 27 27 H 1.08994 * 110.39395 * 224.63881 * 16 15 14 28 28 H 1.09007 * 111.04136 * 142.71943 * 17 16 15 29 29 H 1.09005 * 111.03941 * 266.65721 * 17 16 15 30 30 H 1.09004 * 117.50038 * 215.00000 * 18 9 7 31 31 H 1.08999 * 117.50429 * 0.02562 * 18 9 7 32 32 H 1.09000 * 117.50113 * 359.97438 * 19 9 7 33 33 H 1.09001 * 117.49834 * 145.00023 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0786 -1.1975 -0.1132 9 6 1.2592 -2.4945 0.1561 10 6 0.6852 -3.0856 -1.1332 11 7 1.7850 -3.4608 -2.0318 12 6 1.2772 -4.1469 -3.2274 13 1 0.3218 -3.7198 -3.5324 14 6 1.1313 -5.6274 -2.9625 15 6 2.1133 -6.2998 -3.4983 16 6 3.0777 -5.3799 -4.2104 17 6 2.3032 -4.0530 -4.3847 18 6 1.7617 -3.4731 1.2194 19 6 0.4599 -2.6999 1.4445 20 1 -0.4850 0.8368 -0.0739 21 1 0.0528 -2.3448 -1.6224 22 1 0.0927 -3.9690 -0.8955 23 1 2.3366 -2.6545 -2.2845 24 1 0.3205 -6.0710 -2.4036 25 1 2.2220 -7.3728 -3.4409 26 1 3.9697 -5.2220 -3.6041 27 1 3.3483 -5.7921 -5.1824 28 1 2.9629 -3.1948 -4.2558 29 1 1.8014 -4.0169 -5.3518 30 1 1.6834 -4.5381 1.0005 31 1 2.6311 -3.1763 1.8060 32 1 0.4735 -1.8947 2.1790 33 1 -0.4748 -3.2562 1.3737 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698323802.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:34 Heat of formation + Delta-G solvation = 23.300464 kcal Electronic energy + Delta-G solvation = -13562.124664 eV Core-core repulsion = 11394.870990 eV Total energy + Delta-G solvation = -2167.253674 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.85893 -38.31094 -34.39778 -33.91747 -29.86798 -28.40209 -27.35293 -25.15418 -22.84812 -21.57786 -20.83980 -19.37021 -17.97400 -16.93249 -16.58569 -16.36504 -15.93086 -15.62683 -14.51025 -14.28982 -13.64630 -13.25151 -12.99418 -12.86737 -12.72943 -12.61841 -12.34381 -12.23008 -12.09719 -12.00502 -11.74893 -11.25535 -10.71560 -10.39837 -10.03181 -9.77288 -9.06693 -8.08016 -6.19397 1.40416 1.43618 1.46203 1.52804 2.43181 3.19630 3.37927 3.73020 3.80650 3.91809 4.31025 4.35478 4.45894 4.62311 4.68762 4.74457 4.76162 4.96393 5.00903 5.04358 5.06669 5.10589 5.18970 5.27652 5.34710 5.65702 5.67212 5.69549 5.80574 6.12710 6.39546 6.49240 6.69463 6.90033 7.48506 8.99420 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.035617 B = 0.009171 C = 0.008059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.943866 B = 3052.294610 C = 3473.507791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.024 3.976 3 Si 0.949 3.051 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.270 1.270 7 C -0.503 4.503 8 H 0.053 0.947 9 C 0.028 3.972 10 C 0.124 3.876 11 N -0.666 5.666 12 C 0.094 3.906 13 H 0.024 0.976 14 C -0.168 4.168 15 C -0.150 4.150 16 C -0.090 4.090 17 C -0.123 4.123 18 C -0.177 4.177 19 C -0.170 4.170 20 H 0.258 0.742 21 H 0.001 0.999 22 H 0.041 0.959 23 H 0.340 0.660 24 H 0.113 0.887 25 H 0.142 0.858 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.586 -8.609 -7.546 11.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.176 4.176 3 Si 0.775 3.225 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.195 1.195 7 C -0.540 4.540 8 H 0.071 0.929 9 C 0.027 3.973 10 C -0.006 4.006 11 N -0.297 5.297 12 C -0.016 4.016 13 H 0.042 0.958 14 C -0.187 4.187 15 C -0.168 4.168 16 C -0.127 4.127 17 C -0.161 4.161 18 C -0.214 4.214 19 C -0.208 4.208 20 H 0.067 0.933 21 H 0.019 0.981 22 H 0.059 0.941 23 H 0.159 0.841 24 H 0.131 0.869 25 H 0.160 0.840 26 H 0.091 0.909 27 H 0.107 0.893 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.569 -9.043 -7.150 12.068 hybrid contribution -0.503 1.864 -0.072 1.932 sum 3.066 -7.179 -7.222 10.634 Atomic orbital electron populations 1.70108 1.07129 1.27155 1.50322 1.25689 0.95508 1.01865 0.94576 0.85694 0.78754 0.79811 0.78220 1.20025 1.21377 1.19462 1.20683 0.92934 0.90102 1.50331 0.92860 1.18894 0.98030 0.93598 0.86743 1.21151 0.91231 0.94704 0.93470 1.60473 1.22755 1.31147 1.15335 1.21516 0.96354 0.93368 0.90349 0.95801 1.23148 1.00053 0.94555 1.00945 1.23453 0.94963 0.99811 0.98618 1.21294 0.97689 0.93194 1.00553 1.22667 0.97283 0.98904 0.97226 1.22818 0.96553 0.96386 1.05692 1.22465 0.93671 1.01380 1.03263 0.93277 0.98119 0.94080 0.84112 0.86869 0.84038 0.90927 0.89343 0.90910 0.89645 0.89913 0.90935 0.92451 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.20 12.95 21.45 0.28 -51.92 16 2 C 0.02 1.29 5.39 84.66 0.46 1.75 16 3 Si 0.95 43.32 29.55 68.60 2.03 45.35 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.50 -27.29 8.32 25.60 0.21 -27.07 16 8 H 0.05 2.89 7.82 -2.91 -0.02 2.87 16 9 C 0.03 1.40 1.56 -52.93 -0.08 1.32 16 10 C 0.12 5.74 5.36 86.30 0.46 6.20 16 11 N -0.67 -26.67 6.30 -491.31 -3.10 -29.77 16 12 C 0.09 3.12 3.21 44.97 0.14 3.26 16 13 H 0.02 0.86 7.91 -2.38 -0.02 0.84 16 14 C -0.17 -5.02 10.23 26.27 0.27 -4.75 16 15 C -0.15 -3.70 10.78 26.27 0.28 -3.41 16 16 C -0.09 -2.09 6.80 30.53 0.21 -1.89 16 17 C -0.12 -3.25 6.88 31.82 0.22 -3.04 16 18 C -0.18 -7.98 9.96 30.62 0.30 -7.68 16 19 C -0.17 -8.28 9.46 30.62 0.29 -7.99 16 20 H 0.26 14.22 8.32 -92.71 -0.77 13.44 16 21 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 22 H 0.04 1.82 7.96 -2.39 -0.02 1.80 16 23 H 0.34 14.23 7.70 -89.69 -0.69 13.54 16 24 H 0.11 3.32 8.06 -2.91 -0.02 3.29 16 25 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 26 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.07 1.96 7.61 -2.38 -0.02 1.94 16 29 H 0.08 1.95 8.14 -2.38 -0.02 1.94 16 30 H 0.08 3.41 8.14 -2.38 -0.02 3.39 16 31 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 32 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 33 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -58.65 276.63 2.35 -56.30 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 0.38 Total: 23.34 kcal Atomic # 6 Polarization: -46.06 SS G_CDS: 2.77 Total: -43.30 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -2.82 Total: -81.69 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -58.65 2.35 -56.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698323802.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.603 kcal (2) G-P(sol) polarization free energy of solvation -58.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds