Wall clock time and date at job start Mon Mar 30 2020 02:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99818 * 2 1 4 4 H 1.48498 * 109.47030 * 269.99784 * 3 2 1 5 5 H 1.48495 * 109.47115 * 30.00003 * 3 2 1 6 6 H 1.48500 * 109.46909 * 149.99980 * 3 2 1 7 7 C 1.37873 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00039 * 173.40426 * 7 2 1 9 9 C 1.50698 * 119.99875 * 353.40330 * 7 2 1 10 10 C 1.53001 * 115.55082 * 85.28414 * 9 7 2 11 11 N 1.46907 * 109.47155 * 39.56977 * 10 9 7 12 12 C 1.46894 * 110.99863 * 174.72541 * 11 10 9 13 13 H 1.08998 * 115.55586 * 350.67602 * 12 11 10 14 14 C 1.53004 * 117.49763 * 136.38423 * 12 11 10 15 15 C 1.52987 * 59.99977 * 107.48833 * 14 12 11 16 16 C 1.52993 * 138.58727 * 130.89480 * 15 14 12 17 17 C 1.52999 * 138.58917 * 229.10611 * 15 14 12 18 18 C 1.53002 * 117.51835 * 230.97939 * 9 7 2 19 19 C 1.52998 * 117.50184 * 299.61015 * 9 7 2 20 20 H 0.97006 * 120.00034 * 5.06898 * 1 2 3 21 21 H 1.08998 * 109.46795 * 279.57329 * 10 9 7 22 22 H 1.08996 * 109.47148 * 159.57346 * 10 9 7 23 23 H 1.00900 * 110.99596 * 298.68655 * 11 10 9 24 24 H 1.09005 * 117.49702 * 359.97438 * 14 12 11 25 25 H 1.09005 * 117.49941 * 214.98240 * 14 12 11 26 26 H 1.08998 * 117.50054 * 238.37997 * 16 15 14 27 27 H 1.09000 * 117.50047 * 23.40661 * 16 15 14 28 28 H 1.09007 * 117.49617 * 336.60187 * 17 15 14 29 29 H 1.09003 * 117.49865 * 121.59050 * 17 15 14 30 30 H 1.08998 * 117.50165 * 214.97626 * 18 9 7 31 31 H 1.09005 * 117.49672 * 359.97438 * 18 9 7 32 32 H 1.08996 * 117.49555 * 359.97438 * 19 9 7 33 33 H 1.09004 * 117.50051 * 144.99700 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0792 -1.1972 -0.1069 9 6 1.2585 -2.4947 0.1510 10 6 0.6970 -3.0870 -1.1431 11 7 1.6675 -2.8981 -2.2296 12 6 1.2176 -3.5642 -3.4591 13 1 0.3484 -4.2129 -3.3513 14 6 1.3678 -2.7964 -4.7740 15 6 2.2883 -3.9799 -4.4697 16 6 2.7849 -5.2535 -5.1567 17 6 3.7831 -4.3055 -4.4891 18 6 1.7508 -3.4724 1.2200 19 6 0.4473 -2.6998 1.4320 20 1 -0.4850 0.8368 -0.0742 21 1 -0.2360 -2.5842 -1.3979 22 1 0.5097 -4.1517 -1.0042 23 1 1.8417 -1.9176 -2.3924 24 1 1.8001 -1.7969 -4.7267 25 1 0.5972 -2.9399 -5.5315 26 1 2.5844 -6.2035 -4.6613 27 1 2.7655 -5.2780 -6.2463 28 1 4.4204 -3.7062 -5.1395 29 1 4.2394 -4.6313 -3.5543 30 1 1.6747 -4.5375 1.0013 31 1 2.6148 -3.1751 1.8143 32 1 0.4537 -1.8941 2.1660 33 1 -0.4864 -3.2566 1.3527 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715317702.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:48 Heat of formation + Delta-G solvation = 80.715012 kcal Electronic energy + Delta-G solvation = -13410.685494 eV Core-core repulsion = 11245.921502 eV Total energy + Delta-G solvation = -2164.763992 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.12226 -36.59774 -33.66830 -31.90575 -30.45234 -25.56748 -24.13238 -22.13027 -21.09786 -20.93599 -19.15320 -18.48482 -15.97961 -14.93033 -14.71260 -14.64780 -14.53189 -13.76126 -13.67921 -12.66065 -12.03267 -11.65285 -11.30886 -11.27318 -11.15911 -10.95330 -10.88165 -10.43246 -10.17325 -9.94562 -9.75362 -9.56153 -9.25967 -8.77722 -8.40513 -8.03161 -7.23620 -6.00955 -4.05550 3.28947 3.36986 3.41375 3.98311 4.12743 4.41352 4.67018 5.02391 5.20360 5.27585 5.39545 5.59947 5.80352 5.91258 5.96007 6.04211 6.06174 6.17177 6.20459 6.31360 6.43025 6.45453 6.59996 6.79068 6.85043 6.99758 7.16719 7.46286 7.55395 7.90637 8.11828 8.40690 8.55694 8.97653 9.58673 11.06974 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.029270 B = 0.009547 C = 0.008225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.387415 B = 2932.232789 C = 3403.574450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.068 3.932 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.484 4.484 8 H 0.061 0.939 9 C 0.050 3.950 10 C 0.108 3.892 11 N -0.641 5.641 12 C 0.085 3.915 13 H 0.100 0.900 14 C -0.159 4.159 15 C -0.225 4.225 16 C -0.138 4.138 17 C -0.122 4.122 18 C -0.208 4.208 19 C -0.163 4.163 20 H 0.259 0.741 21 H 0.031 0.969 22 H 0.038 0.962 23 H 0.357 0.643 24 H 0.095 0.905 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.033 -6.020 -7.137 9.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.135 4.135 3 Si 0.715 3.285 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.522 4.522 8 H 0.080 0.920 9 C 0.050 3.950 10 C -0.021 4.021 11 N -0.273 5.273 12 C -0.027 4.027 13 H 0.117 0.883 14 C -0.198 4.198 15 C -0.227 4.227 16 C -0.175 4.175 17 C -0.159 4.159 18 C -0.245 4.245 19 C -0.201 4.201 20 H 0.068 0.932 21 H 0.049 0.951 22 H 0.057 0.943 23 H 0.180 0.820 24 H 0.113 0.887 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.115 0.885 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.259 -6.381 -6.823 9.611 hybrid contribution -0.323 1.545 -0.334 1.613 sum 1.936 -4.836 -7.157 8.852 Atomic orbital electron populations 1.69999 1.05819 1.26551 1.49498 1.25010 0.94784 0.98776 0.94918 0.86672 0.80037 0.83711 0.78109 1.20735 1.21357 1.19835 1.20409 0.93175 0.88529 1.50106 0.92046 1.18772 0.97133 0.93627 0.85505 1.21431 0.92562 0.96505 0.91609 1.60023 1.44794 1.19761 1.02677 1.22160 0.94863 0.99292 0.86382 0.88274 1.23239 1.00534 0.95127 1.00890 1.21778 0.95922 0.98484 1.06468 1.22586 1.03337 0.93057 0.98509 1.22454 0.90225 1.01431 1.01813 1.22994 0.98052 0.95635 1.07806 1.22526 0.92223 1.01299 1.04017 0.93158 0.95099 0.94347 0.81976 0.88665 0.89338 0.89149 0.89414 0.89500 0.88470 0.91883 0.90749 0.90233 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.50 12.92 55.43 0.72 -23.78 16 2 C 0.07 1.82 5.39 -17.82 -0.10 1.72 16 3 Si 0.89 20.88 29.55 -169.99 -5.02 15.86 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.48 -12.92 7.47 -34.44 -0.26 -13.18 16 8 H 0.06 1.68 7.82 -52.49 -0.41 1.26 16 9 C 0.05 1.24 1.76 -155.66 -0.27 0.97 16 10 C 0.11 2.43 5.65 -3.82 -0.02 2.41 16 11 N -0.64 -13.48 6.54 -106.73 -0.70 -14.18 16 12 C 0.09 1.51 6.31 -67.72 -0.43 1.08 16 13 H 0.10 1.69 7.90 -51.93 -0.41 1.27 16 14 C -0.16 -2.50 10.23 -26.74 -0.27 -2.77 16 15 C -0.22 -3.57 5.60 -154.52 -0.87 -4.44 16 16 C -0.14 -1.81 10.53 -26.73 -0.28 -2.09 16 17 C -0.12 -1.77 10.53 -26.73 -0.28 -2.05 16 18 C -0.21 -4.69 9.88 -26.73 -0.26 -4.95 16 19 C -0.16 -3.88 9.46 -26.73 -0.25 -4.13 16 20 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 21 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 22 H 0.04 0.81 7.93 -51.93 -0.41 0.40 16 23 H 0.36 8.07 7.49 -39.29 -0.29 7.77 16 24 H 0.10 1.53 8.09 -51.93 -0.42 1.11 16 25 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.06 1.31 8.08 -51.93 -0.42 0.89 16 31 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 32 H 0.08 2.02 8.14 -51.93 -0.42 1.59 16 33 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 282.05 15.07 4.25 4.25 Total: -1.00 -27.29 282.05 -9.36 -36.64 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -5.31 Total: 8.64 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: -3.30 Total: -27.43 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.02 Total: -37.96 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.29 -9.36 -36.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715317702.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.359 kcal (2) G-P(sol) polarization free energy of solvation -27.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds