Wall clock time and date at job start Mon Mar 30 2020 02:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99818 * 2 1 4 4 H 1.48498 * 109.47030 * 269.99784 * 3 2 1 5 5 H 1.48495 * 109.47115 * 30.00003 * 3 2 1 6 6 H 1.48500 * 109.46909 * 149.99980 * 3 2 1 7 7 C 1.37873 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00039 * 173.40426 * 7 2 1 9 9 C 1.50698 * 119.99875 * 353.40330 * 7 2 1 10 10 C 1.53001 * 115.55082 * 85.28414 * 9 7 2 11 11 N 1.46907 * 109.47155 * 39.56977 * 10 9 7 12 12 C 1.46894 * 110.99863 * 174.72541 * 11 10 9 13 13 H 1.08998 * 115.55586 * 350.67602 * 12 11 10 14 14 C 1.53004 * 117.49763 * 136.38423 * 12 11 10 15 15 C 1.52987 * 59.99977 * 107.48833 * 14 12 11 16 16 C 1.52993 * 138.58727 * 130.89480 * 15 14 12 17 17 C 1.52999 * 138.58917 * 229.10611 * 15 14 12 18 18 C 1.53002 * 117.51835 * 230.97939 * 9 7 2 19 19 C 1.52998 * 117.50184 * 299.61015 * 9 7 2 20 20 H 0.97006 * 120.00034 * 5.06898 * 1 2 3 21 21 H 1.08998 * 109.46795 * 279.57329 * 10 9 7 22 22 H 1.08996 * 109.47148 * 159.57346 * 10 9 7 23 23 H 1.00900 * 110.99596 * 298.68655 * 11 10 9 24 24 H 1.09005 * 117.49702 * 359.97438 * 14 12 11 25 25 H 1.09005 * 117.49941 * 214.98240 * 14 12 11 26 26 H 1.08998 * 117.50054 * 238.37997 * 16 15 14 27 27 H 1.09000 * 117.50047 * 23.40661 * 16 15 14 28 28 H 1.09007 * 117.49617 * 336.60187 * 17 15 14 29 29 H 1.09003 * 117.49865 * 121.59050 * 17 15 14 30 30 H 1.08998 * 117.50165 * 214.97626 * 18 9 7 31 31 H 1.09005 * 117.49672 * 359.97438 * 18 9 7 32 32 H 1.08996 * 117.49555 * 359.97438 * 19 9 7 33 33 H 1.09004 * 117.50051 * 144.99700 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0792 -1.1972 -0.1069 9 6 1.2585 -2.4947 0.1510 10 6 0.6970 -3.0870 -1.1431 11 7 1.6675 -2.8981 -2.2296 12 6 1.2176 -3.5642 -3.4591 13 1 0.3484 -4.2129 -3.3513 14 6 1.3678 -2.7964 -4.7740 15 6 2.2883 -3.9799 -4.4697 16 6 2.7849 -5.2535 -5.1567 17 6 3.7831 -4.3055 -4.4891 18 6 1.7508 -3.4724 1.2200 19 6 0.4473 -2.6998 1.4320 20 1 -0.4850 0.8368 -0.0742 21 1 -0.2360 -2.5842 -1.3979 22 1 0.5097 -4.1517 -1.0042 23 1 1.8417 -1.9176 -2.3924 24 1 1.8001 -1.7969 -4.7267 25 1 0.5972 -2.9399 -5.5315 26 1 2.5844 -6.2035 -4.6613 27 1 2.7655 -5.2780 -6.2463 28 1 4.4204 -3.7062 -5.1395 29 1 4.2394 -4.6313 -3.5543 30 1 1.6747 -4.5375 1.0013 31 1 2.6148 -3.1751 1.8143 32 1 0.4537 -1.8941 2.1660 33 1 -0.4864 -3.2566 1.3527 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715317702.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:48 Heat of formation + Delta-G solvation = 66.035030 kcal Electronic energy + Delta-G solvation = -13411.322066 eV Core-core repulsion = 11245.921502 eV Total energy + Delta-G solvation = -2165.400564 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.47661 -38.34895 -35.10618 -33.95966 -31.87158 -27.59580 -25.87331 -23.20968 -22.87609 -22.38135 -21.00131 -19.80018 -17.92072 -16.61576 -16.39177 -16.09677 -15.78550 -15.50694 -15.23986 -14.49894 -13.63137 -13.35728 -13.07060 -12.85678 -12.84517 -12.47147 -12.31654 -12.27708 -11.99033 -11.51396 -11.18657 -10.81259 -10.75702 -10.72734 -10.35624 -9.90820 -8.84523 -8.06558 -6.15968 1.41027 1.44426 1.53169 2.44284 2.76322 2.89690 3.21117 3.38015 3.55079 3.77734 4.00538 4.19337 4.36830 4.59443 4.62369 4.71648 4.76673 4.81064 4.85410 4.89384 4.93817 5.00981 5.05940 5.10157 5.16944 5.27558 5.36070 5.62196 5.65520 5.80678 6.40349 6.57873 6.69018 6.90992 7.50485 9.00767 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.029270 B = 0.009547 C = 0.008225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.387415 B = 2932.232789 C = 3403.574450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.027 3.973 3 Si 0.944 3.056 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.491 4.491 8 H 0.049 0.951 9 C 0.023 3.977 10 C 0.122 3.878 11 N -0.647 5.647 12 C 0.058 3.942 13 H 0.104 0.896 14 C -0.149 4.149 15 C -0.241 4.241 16 C -0.112 4.112 17 C -0.130 4.130 18 C -0.188 4.188 19 C -0.166 4.166 20 H 0.258 0.742 21 H 0.005 0.995 22 H 0.052 0.948 23 H 0.344 0.656 24 H 0.086 0.914 25 H 0.110 0.890 26 H 0.099 0.901 27 H 0.112 0.888 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.696 -6.864 -8.352 11.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.173 4.173 3 Si 0.771 3.229 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.530 4.530 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.008 4.008 11 N -0.276 5.276 12 C -0.053 4.053 13 H 0.122 0.878 14 C -0.187 4.187 15 C -0.242 4.242 16 C -0.149 4.149 17 C -0.167 4.167 18 C -0.225 4.225 19 C -0.204 4.204 20 H 0.067 0.933 21 H 0.024 0.976 22 H 0.070 0.930 23 H 0.164 0.836 24 H 0.105 0.895 25 H 0.128 0.872 26 H 0.117 0.883 27 H 0.130 0.870 28 H 0.118 0.882 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.932 -7.246 -8.048 11.219 hybrid contribution -0.503 1.758 0.036 1.829 sum 2.429 -5.488 -8.011 10.010 Atomic orbital electron populations 1.70097 1.06915 1.27075 1.50482 1.25597 0.95444 1.01473 0.94757 0.85766 0.78729 0.80199 0.78232 1.20009 1.21411 1.19797 1.20539 0.92707 0.89873 1.49843 0.93268 1.18966 0.98049 0.93940 0.86767 1.21211 0.91626 0.96596 0.91327 1.60035 1.44688 1.18889 1.04007 1.22230 0.96511 1.00631 0.85952 0.87839 1.23208 1.00963 0.94756 0.99787 1.21915 0.96657 1.00305 1.05370 1.22739 1.00292 0.92063 0.99790 1.22564 0.89753 1.02311 1.02050 1.22992 0.97038 0.96485 1.06007 1.22439 0.93484 1.01269 1.03235 0.93290 0.97645 0.93001 0.83586 0.89537 0.87210 0.88257 0.86998 0.88208 0.89486 0.89533 0.90921 0.92436 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.08 12.92 21.45 0.28 -50.81 16 2 C 0.03 1.47 5.39 84.65 0.46 1.93 16 3 Si 0.94 43.15 29.55 68.60 2.03 45.18 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.49 -26.47 7.47 25.60 0.19 -26.28 16 8 H 0.05 2.71 7.82 -2.91 -0.02 2.69 16 9 C 0.02 1.16 1.76 -52.93 -0.09 1.06 16 10 C 0.12 5.50 5.65 86.30 0.49 5.99 16 11 N -0.65 -27.18 6.54 -491.58 -3.21 -30.40 16 12 C 0.06 2.00 6.31 44.92 0.28 2.29 16 13 H 0.10 3.43 7.90 -2.39 -0.02 3.41 16 14 C -0.15 -4.45 10.23 30.59 0.31 -4.14 16 15 C -0.24 -7.17 5.60 -52.19 -0.29 -7.46 16 16 C -0.11 -2.56 10.53 30.59 0.32 -2.24 16 17 C -0.13 -3.47 10.53 30.59 0.32 -3.15 16 18 C -0.19 -8.30 9.88 30.60 0.30 -7.99 16 19 C -0.17 -7.92 9.46 30.59 0.29 -7.64 16 20 H 0.26 13.98 8.32 -92.70 -0.77 13.21 16 21 H 0.01 0.26 8.14 -2.39 -0.02 0.25 16 22 H 0.05 2.16 7.93 -2.39 -0.02 2.14 16 23 H 0.34 15.77 7.49 -89.69 -0.67 15.10 16 24 H 0.09 2.72 8.09 -2.38 -0.02 2.70 16 25 H 0.11 2.77 8.14 -2.38 -0.02 2.75 16 26 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 29 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.09 3.39 8.08 -2.39 -0.02 3.37 16 31 H 0.07 3.20 8.14 -2.38 -0.02 3.18 16 32 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 33 H 0.07 3.22 8.14 -2.38 -0.02 3.20 16 Total: -1.00 -57.33 282.05 2.07 -55.25 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: 0.40 Total: 28.41 kcal Atomic # 6 Polarization: -50.21 SS G_CDS: 2.58 Total: -47.63 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -2.94 Total: -81.21 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -57.33 2.07 -55.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715317702.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.288 kcal (2) G-P(sol) polarization free energy of solvation -57.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds