Wall clock time and date at job start Mon Mar 30 2020 02:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99746 * 2 1 4 4 H 1.48497 * 109.47370 * 240.00581 * 3 2 1 5 5 H 1.48501 * 109.46808 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46653 * 120.00438 * 3 2 1 7 7 C 1.38807 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99909 * 200.85818 * 7 2 1 9 9 N 1.36934 * 120.00644 * 20.85586 * 7 2 1 10 10 C 1.46506 * 119.99838 * 37.51735 * 9 7 2 11 11 C 1.53000 * 109.46926 * 90.00316 * 10 9 7 12 12 H 1.08997 * 115.55207 * 29.41497 * 11 10 9 13 13 C 1.53007 * 117.49858 * 243.74777 * 11 10 9 14 14 C 1.52989 * 117.49932 * 175.09029 * 11 10 9 15 15 C 1.53002 * 138.58349 * 336.59551 * 14 11 10 16 16 C 1.52993 * 138.59107 * 238.38851 * 14 11 10 17 17 C 1.46500 * 120.00467 * 217.52396 * 9 7 2 18 18 C 1.53002 * 117.49604 * 14.31637 * 17 9 7 19 19 C 1.53001 * 117.49291 * 305.69395 * 17 9 7 20 20 H 0.96999 * 120.00338 * 354.87946 * 1 2 3 21 21 H 1.08999 * 109.46947 * 330.00608 * 10 9 7 22 22 H 1.08991 * 109.47150 * 210.00503 * 10 9 7 23 23 H 1.08998 * 117.49685 * 0.02562 * 13 11 10 24 24 H 1.09001 * 117.49592 * 145.02197 * 13 11 10 25 25 H 1.08994 * 117.50363 * 336.59901 * 15 14 11 26 26 H 1.09001 * 117.49606 * 121.62115 * 15 14 11 27 27 H 1.09000 * 117.49946 * 238.38316 * 16 14 11 28 28 H 1.09000 * 117.49787 * 23.39268 * 16 14 11 29 29 H 1.08998 * 115.55047 * 160.02213 * 17 9 7 30 30 H 1.08996 * 117.50049 * 359.97438 * 18 17 9 31 31 H 1.08995 * 117.49875 * 145.02204 * 18 17 9 32 32 H 1.09001 * 117.49744 * 214.97595 * 19 17 9 33 33 H 1.08992 * 117.50477 * 0.02562 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6967 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0372 -1.2329 0.3325 9 7 1.3930 -2.3490 -0.4232 10 6 0.4580 -2.3050 -1.5503 11 6 1.2212 -2.5393 -2.8555 12 1 2.1132 -3.1603 -2.7735 13 6 1.2466 -1.3975 -3.8737 14 6 0.4023 -2.6455 -4.1434 15 6 -1.0246 -2.9958 -4.5701 16 6 0.1666 -3.6492 -5.2737 17 6 1.6674 -3.6201 0.2516 18 6 2.3732 -3.5618 1.6079 19 6 3.1295 -4.0544 0.3724 20 1 -0.4850 0.8367 0.0750 21 1 -0.0263 -1.3291 -1.5827 22 1 -0.2970 -3.0813 -1.4265 23 1 0.7198 -0.4794 -3.6135 24 1 2.1550 -1.2678 -4.4619 25 1 -1.6135 -3.6171 -3.8956 26 1 -1.5839 -2.2413 -5.1234 27 1 0.3910 -3.3247 -6.2898 28 1 0.3613 -4.7005 -5.0620 29 1 0.9208 -4.4007 0.1055 30 1 2.6337 -2.5779 1.9978 31 1 2.0909 -4.3042 2.3544 32 1 3.3448 -5.1209 0.3061 33 1 3.8872 -3.3944 -0.0498 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722889253.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:03 Heat of formation + Delta-G solvation = 103.259659 kcal Electronic energy + Delta-G solvation = -13663.587031 eV Core-core repulsion = 11499.800648 eV Total energy + Delta-G solvation = -2163.786383 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -37.95736 -36.68717 -33.58066 -32.02413 -30.11279 -25.88558 -23.51414 -22.04700 -21.31927 -20.46437 -19.67100 -18.25113 -16.32334 -15.36345 -14.68977 -14.56085 -14.16304 -13.98419 -13.39647 -12.56381 -12.02201 -11.40336 -11.28531 -11.19820 -10.91389 -10.78731 -10.55301 -10.50204 -10.24875 -10.05102 -9.68609 -9.38709 -9.36479 -9.08671 -8.90661 -8.38098 -6.43932 -5.80395 -3.36339 3.35805 3.41646 3.44481 4.16885 4.32973 4.46402 4.86107 5.00574 5.28040 5.37711 5.44446 5.55901 5.89130 5.94912 6.05872 6.11958 6.17884 6.24099 6.33870 6.35547 6.45134 6.47781 6.51584 6.63036 6.72956 6.90815 7.01081 7.05565 7.21992 7.72725 7.84330 8.53326 9.18755 9.81246 10.38324 11.20701 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.022931 B = 0.012803 C = 0.009347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.778590 B = 2186.413373 C = 2994.773799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.018 3.982 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.258 4.258 8 H 0.061 0.939 9 N -0.548 5.548 10 C 0.175 3.825 11 C -0.090 4.090 12 H 0.092 0.908 13 C -0.124 4.124 14 C -0.237 4.237 15 C -0.132 4.132 16 C -0.141 4.141 17 C 0.128 3.872 18 C -0.198 4.198 19 C -0.229 4.229 20 H 0.257 0.743 21 H 0.103 0.897 22 H 0.029 0.971 23 H 0.093 0.907 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.437 -5.178 -5.721 7.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.183 4.183 3 Si 0.727 3.273 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.388 4.388 8 H 0.078 0.922 9 N -0.264 5.264 10 C 0.049 3.951 11 C -0.110 4.110 12 H 0.110 0.890 13 C -0.161 4.161 14 C -0.238 4.238 15 C -0.169 4.169 16 C -0.178 4.178 17 C 0.018 3.982 18 C -0.237 4.237 19 C -0.270 4.270 20 H 0.067 0.933 21 H 0.120 0.880 22 H 0.047 0.953 23 H 0.111 0.889 24 H 0.100 0.900 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.264 -4.984 -5.779 7.636 hybrid contribution 0.606 0.862 0.000 1.053 sum 0.870 -4.123 -5.779 7.152 Atomic orbital electron populations 1.69880 1.05571 1.26166 1.51531 1.25177 0.95046 0.98597 0.99440 0.86452 0.79227 0.83222 0.78423 1.20664 1.21563 1.20714 1.18864 0.94164 0.84852 1.40905 0.92184 1.43378 1.50225 1.02123 1.30626 1.20600 0.89805 1.02650 0.82032 1.23190 0.98813 0.98737 0.90296 0.88979 1.22703 0.98966 0.92108 1.02354 1.21644 0.98251 1.02668 1.01196 1.22477 0.89802 1.02330 1.02287 1.22545 1.02596 0.97060 0.95560 1.21126 0.91322 0.90777 0.94937 1.23064 1.07054 1.02016 0.91561 1.23360 1.00025 0.98924 1.04696 0.93282 0.87953 0.95294 0.88897 0.90045 0.89053 0.89386 0.89571 0.89347 0.89556 0.88362 0.90913 0.91056 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.22 11.43 55.49 0.63 -24.59 16 2 C 0.02 0.48 4.97 -17.43 -0.09 0.40 16 3 Si 0.90 21.45 29.61 -169.99 -5.03 16.42 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.26 -6.96 8.05 -15.06 -0.12 -7.08 16 8 H 0.06 1.64 7.19 -52.48 -0.38 1.26 16 9 N -0.55 -13.65 2.79 -165.66 -0.46 -14.11 16 10 C 0.18 4.13 5.62 -4.04 -0.02 4.11 16 11 C -0.09 -1.86 6.01 -90.62 -0.54 -2.40 16 12 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 13 C -0.12 -2.41 10.18 -26.69 -0.27 -2.68 16 14 C -0.24 -4.24 5.40 -154.48 -0.83 -5.07 16 15 C -0.13 -2.04 10.53 -26.73 -0.28 -2.32 16 16 C -0.14 -2.05 10.53 -26.74 -0.28 -2.33 16 17 C 0.13 2.80 6.62 -67.93 -0.45 2.35 16 18 C -0.20 -4.06 9.81 -26.73 -0.26 -4.33 16 19 C -0.23 -4.50 10.08 -26.73 -0.27 -4.77 16 20 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 21 H 0.10 2.71 5.22 -51.93 -0.27 2.44 16 22 H 0.03 0.66 8.04 -51.93 -0.42 0.24 16 23 H 0.09 1.90 8.03 -51.93 -0.42 1.48 16 24 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 25 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 26 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.09 1.76 8.10 -51.93 -0.42 1.34 16 30 H 0.10 2.23 6.96 -51.93 -0.36 1.86 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.08 1.76 7.98 -51.93 -0.41 1.34 16 LS Contribution 277.89 15.07 4.19 4.19 Total: -1.00 -27.83 277.89 -9.29 -37.12 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.20 Total: 5.09 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -3.42 Total: -24.12 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.17 Total: -38.70 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -27.83 -9.29 -37.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722889253.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.381 kcal (2) G-P(sol) polarization free energy of solvation -27.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds