Wall clock time and date at job start Mon Mar 30 2020 02:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99746 * 2 1 4 4 H 1.48497 * 109.47370 * 240.00581 * 3 2 1 5 5 H 1.48501 * 109.46808 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46653 * 120.00438 * 3 2 1 7 7 C 1.38807 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99909 * 200.85818 * 7 2 1 9 9 N 1.36934 * 120.00644 * 20.85586 * 7 2 1 10 10 C 1.46506 * 119.99838 * 37.51735 * 9 7 2 11 11 C 1.53000 * 109.46926 * 90.00316 * 10 9 7 12 12 H 1.08997 * 115.55207 * 29.41497 * 11 10 9 13 13 C 1.53007 * 117.49858 * 243.74777 * 11 10 9 14 14 C 1.52989 * 117.49932 * 175.09029 * 11 10 9 15 15 C 1.53002 * 138.58349 * 336.59551 * 14 11 10 16 16 C 1.52993 * 138.59107 * 238.38851 * 14 11 10 17 17 C 1.46500 * 120.00467 * 217.52396 * 9 7 2 18 18 C 1.53002 * 117.49604 * 14.31637 * 17 9 7 19 19 C 1.53001 * 117.49291 * 305.69395 * 17 9 7 20 20 H 0.96999 * 120.00338 * 354.87946 * 1 2 3 21 21 H 1.08999 * 109.46947 * 330.00608 * 10 9 7 22 22 H 1.08991 * 109.47150 * 210.00503 * 10 9 7 23 23 H 1.08998 * 117.49685 * 0.02562 * 13 11 10 24 24 H 1.09001 * 117.49592 * 145.02197 * 13 11 10 25 25 H 1.08994 * 117.50363 * 336.59901 * 15 14 11 26 26 H 1.09001 * 117.49606 * 121.62115 * 15 14 11 27 27 H 1.09000 * 117.49946 * 238.38316 * 16 14 11 28 28 H 1.09000 * 117.49787 * 23.39268 * 16 14 11 29 29 H 1.08998 * 115.55047 * 160.02213 * 17 9 7 30 30 H 1.08996 * 117.50049 * 359.97438 * 18 17 9 31 31 H 1.08995 * 117.49875 * 145.02204 * 18 17 9 32 32 H 1.09001 * 117.49744 * 214.97595 * 19 17 9 33 33 H 1.08992 * 117.50477 * 0.02562 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6967 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0372 -1.2329 0.3325 9 7 1.3930 -2.3490 -0.4232 10 6 0.4580 -2.3050 -1.5503 11 6 1.2212 -2.5393 -2.8555 12 1 2.1132 -3.1603 -2.7735 13 6 1.2466 -1.3975 -3.8737 14 6 0.4023 -2.6455 -4.1434 15 6 -1.0246 -2.9958 -4.5701 16 6 0.1666 -3.6492 -5.2737 17 6 1.6674 -3.6201 0.2516 18 6 2.3732 -3.5618 1.6079 19 6 3.1295 -4.0544 0.3724 20 1 -0.4850 0.8367 0.0750 21 1 -0.0263 -1.3291 -1.5827 22 1 -0.2970 -3.0813 -1.4265 23 1 0.7198 -0.4794 -3.6135 24 1 2.1550 -1.2678 -4.4619 25 1 -1.6135 -3.6171 -3.8956 26 1 -1.5839 -2.2413 -5.1234 27 1 0.3910 -3.3247 -6.2898 28 1 0.3613 -4.7005 -5.0620 29 1 0.9208 -4.4007 0.1055 30 1 2.6337 -2.5779 1.9978 31 1 2.0909 -4.3042 2.3544 32 1 3.3448 -5.1209 0.3061 33 1 3.8872 -3.3944 -0.0498 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722889253.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:03 Heat of formation + Delta-G solvation = 90.127057 kcal Electronic energy + Delta-G solvation = -13664.156504 eV Core-core repulsion = 11499.800648 eV Total energy + Delta-G solvation = -2164.355855 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.49069 -38.33274 -35.35113 -33.66778 -31.95074 -27.80848 -25.37853 -23.23036 -22.94198 -22.09586 -21.48288 -19.68726 -18.26961 -17.21487 -16.38860 -15.87860 -15.82259 -15.65076 -15.01905 -14.38780 -13.77949 -13.17526 -13.05740 -12.76271 -12.66770 -12.33868 -12.21745 -12.13648 -12.01134 -11.89038 -11.42365 -10.99008 -10.73420 -10.66944 -10.52862 -10.31043 -8.41077 -7.83051 -5.43920 1.43086 1.46354 1.52399 2.46309 2.85684 2.90589 3.16333 3.40098 3.49270 3.67958 4.07493 4.11568 4.30215 4.50775 4.55852 4.72905 4.77218 4.78274 4.88901 4.91890 4.94804 4.99472 5.02347 5.04658 5.16039 5.30688 5.35579 5.37535 5.55498 5.67503 5.85087 6.48124 7.16747 7.86537 8.38059 9.13217 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.022931 B = 0.012803 C = 0.009347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.778590 B = 2186.413373 C = 2994.773799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.028 4.028 3 Si 0.952 3.048 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.259 4.259 8 H 0.051 0.949 9 N -0.566 5.566 10 C 0.182 3.818 11 C -0.105 4.105 12 H 0.086 0.914 13 C -0.130 4.130 14 C -0.248 4.248 15 C -0.132 4.132 16 C -0.113 4.113 17 C 0.100 3.900 18 C -0.196 4.196 19 C -0.204 4.204 20 H 0.253 0.747 21 H 0.071 0.929 22 H 0.026 0.974 23 H 0.072 0.928 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.887 -6.492 -6.799 9.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.225 4.225 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.389 4.389 8 H 0.069 0.931 9 N -0.283 5.283 10 C 0.056 3.944 11 C -0.125 4.125 12 H 0.104 0.896 13 C -0.167 4.167 14 C -0.249 4.249 15 C -0.168 4.168 16 C -0.150 4.150 17 C -0.008 4.008 18 C -0.235 4.235 19 C -0.244 4.244 20 H 0.063 0.937 21 H 0.088 0.912 22 H 0.044 0.956 23 H 0.090 0.910 24 H 0.114 0.886 25 H 0.113 0.887 26 H 0.119 0.881 27 H 0.127 0.873 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.730 -6.321 -6.857 9.355 hybrid contribution 0.453 1.185 0.341 1.314 sum 1.183 -5.136 -6.516 8.381 Atomic orbital electron populations 1.70009 1.06727 1.26376 1.53076 1.25781 0.95683 1.01189 0.99883 0.85582 0.78073 0.79891 0.78424 1.20414 1.21646 1.20189 1.18958 0.93852 0.86033 1.40096 0.93121 1.43544 1.50422 1.02678 1.31646 1.20387 0.89934 1.00672 0.83380 1.22779 0.99327 1.00291 0.90099 0.89631 1.22611 1.00085 0.91611 1.02415 1.21722 1.00538 1.02125 1.00471 1.22681 0.89218 1.02655 1.02284 1.22748 1.00011 0.96918 0.95282 1.21396 0.93189 0.90155 0.96065 1.23064 1.06844 1.01610 0.91973 1.23298 0.97721 1.00480 1.02940 0.93737 0.91164 0.95571 0.90980 0.88616 0.88702 0.88076 0.87293 0.87859 0.88037 0.91096 0.87958 0.87596 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.59 11.43 21.65 0.25 -53.34 16 2 C -0.03 -1.55 4.97 84.86 0.42 -1.13 16 3 Si 0.95 44.89 29.61 68.60 2.03 46.92 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.26 -14.25 8.05 84.03 0.68 -13.57 16 8 H 0.05 2.83 7.19 -2.91 -0.02 2.81 16 9 N -0.57 -28.63 2.79 -678.03 -1.89 -30.52 16 10 C 0.18 8.77 5.62 86.38 0.49 9.26 16 11 C -0.10 -4.33 6.01 -10.79 -0.06 -4.40 16 12 H 0.09 3.61 8.14 -2.39 -0.02 3.59 16 13 C -0.13 -5.04 10.18 30.62 0.31 -4.73 16 14 C -0.25 -8.50 5.40 -52.16 -0.28 -8.78 16 15 C -0.13 -3.74 10.53 30.59 0.32 -3.42 16 16 C -0.11 -2.89 10.53 30.59 0.32 -2.56 16 17 C 0.10 4.33 6.62 44.99 0.30 4.62 16 18 C -0.20 -7.83 9.81 30.60 0.30 -7.52 16 19 C -0.20 -7.64 10.08 30.60 0.31 -7.33 16 20 H 0.25 14.33 8.32 -92.71 -0.77 13.56 16 21 H 0.07 3.87 5.22 -2.39 -0.01 3.86 16 22 H 0.03 1.22 8.04 -2.39 -0.02 1.20 16 23 H 0.07 3.04 8.03 -2.39 -0.02 3.02 16 24 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 25 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 26 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.10 4.01 8.10 -2.39 -0.02 3.99 16 30 H 0.07 3.23 6.96 -2.39 -0.02 3.21 16 31 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 32 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.07 2.77 7.98 -2.39 -0.02 2.75 16 Total: -1.00 -60.27 277.89 4.56 -55.71 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 1.07 Total: 20.79 kcal Atomic # 6 Polarization: -42.66 SS G_CDS: 3.10 Total: -39.56 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -1.64 Total: -83.86 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -60.27 4.56 -55.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722889253.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.837 kcal (2) G-P(sol) polarization free energy of solvation -60.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds