Wall clock time and date at job start Mon Mar 30 2020 02:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46903 * 109.46979 * 311.23649 * 3 2 1 5 5 C 1.46899 * 111.00039 * 195.68403 * 4 3 2 6 6 C 1.50703 * 109.47191 * 66.04489 * 5 4 3 7 7 H 1.08000 * 120.00023 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00175 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99942 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00188 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46726 * 60.00431 * 10 8 6 12 12 H 1.48497 * 109.47360 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46996 * 300.00541 * 10 8 6 14 14 C 1.46905 * 110.99871 * 71.73226 * 4 3 2 15 15 C 1.54265 * 110.03169 * 189.27890 * 14 4 3 16 16 C 1.54957 * 104.16305 * 217.13572 * 15 14 4 17 17 C 1.54887 * 102.77756 * 37.88915 * 16 15 14 18 18 C 1.53879 * 110.03117 * 72.06590 * 14 4 3 19 19 H 4.40881 * 5.52163 * 179.97438 * 4 1 2 20 20 H 1.08996 * 109.47589 * 191.24088 * 3 2 1 21 21 H 1.08997 * 109.47221 * 71.23638 * 3 2 1 22 22 H 1.08998 * 109.47443 * 186.04659 * 5 4 3 23 23 H 1.09006 * 109.47530 * 306.04765 * 5 4 3 24 24 H 0.97004 * 119.99849 * 179.97438 * 9 8 6 25 25 H 1.08994 * 110.01629 * 310.67555 * 14 4 3 26 26 H 1.09003 * 110.48507 * 335.78664 * 15 14 4 27 27 H 1.09001 * 110.48712 * 98.42422 * 15 14 4 28 28 H 1.09000 * 110.72187 * 279.57813 * 16 15 14 29 29 H 1.08998 * 110.92792 * 156.29744 * 16 15 14 30 30 H 1.09002 * 110.49160 * 203.40302 * 17 16 15 31 31 H 1.09001 * 110.60127 * 80.81574 * 17 16 15 32 32 H 1.09000 * 110.02802 * 238.56440 * 18 14 4 33 33 H 1.08994 * 110.03360 * 359.97438 * 18 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1360 -0.9121 1.0415 5 6 4.5562 -0.6697 1.3282 6 6 4.7185 0.6964 1.9434 7 1 3.8532 1.3219 2.1056 8 6 5.9716 1.1474 2.3001 9 7 7.0254 0.3855 2.1031 10 14 6.1727 2.8405 3.0633 11 1 5.3937 2.9101 4.3256 12 1 7.6084 3.0856 3.3530 13 1 5.6760 3.8720 2.1174 14 6 2.9068 -2.3132 0.6640 15 6 3.2119 -3.2392 1.8595 16 6 3.8640 -4.4883 1.2148 17 6 4.7283 -3.8781 0.0835 18 6 3.8703 -2.7193 -0.4650 19 1 -1.0499 0.0000 0.0003 20 1 3.0089 1.0087 0.2003 21 1 3.0094 -0.3297 -0.9730 22 1 4.9210 -1.4265 2.0226 23 1 5.1279 -0.7211 0.4016 24 1 7.9071 0.7030 2.3537 25 1 1.8747 -2.4484 0.3408 26 1 3.9073 -2.7579 2.5471 27 1 2.2912 -3.5120 2.3755 28 1 3.1032 -5.1521 0.8042 29 1 4.4881 -5.0172 1.9351 30 1 4.9140 -4.6173 -0.6958 31 1 5.6699 -3.5001 0.4817 32 1 3.3056 -3.0525 -1.3357 33 1 4.5076 -1.8767 -0.7331 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756912480.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:43 Heat of formation + Delta-G solvation = 49.336067 kcal Electronic energy + Delta-G solvation = -13739.699312 eV Core-core repulsion = 11573.574627 eV Total energy + Delta-G solvation = -2166.124685 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.75019 -34.92517 -32.86713 -31.75118 -28.27178 -27.75391 -27.05794 -24.33470 -21.82456 -20.22127 -18.69834 -17.38497 -16.66726 -15.28905 -15.12709 -14.47876 -14.10035 -13.75144 -13.21303 -12.94843 -12.11257 -12.05039 -11.38421 -11.13697 -10.96739 -10.77689 -10.67336 -10.61923 -10.56627 -10.24284 -9.99408 -9.88899 -9.63074 -9.48369 -9.15718 -8.42065 -7.22024 -6.03400 -4.04596 3.29085 3.33524 3.37705 3.38063 3.41316 4.42797 4.86711 4.98707 5.13389 5.22326 5.32051 5.50997 5.85347 5.97203 6.01631 6.07681 6.15833 6.17600 6.28447 6.34173 6.42468 6.47511 6.54342 6.69892 6.76285 6.87623 7.30655 7.39179 7.80898 8.07953 8.13345 8.22707 8.54842 9.03139 9.59553 11.06919 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.025439 B = 0.011270 C = 0.008531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.404345 B = 2483.942057 C = 3281.454141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.144 4.144 3 C 0.155 3.845 4 N -0.526 5.526 5 C 0.191 3.809 6 C -0.513 4.513 7 H 0.062 0.938 8 C 0.058 3.942 9 N -0.897 5.897 10 Si 0.896 3.104 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.081 3.919 15 C -0.116 4.116 16 C -0.123 4.123 17 C -0.119 4.119 18 C -0.160 4.160 19 H 0.210 0.790 20 H 0.109 0.891 21 H 0.047 0.953 22 H 0.041 0.959 23 H -0.002 1.002 24 H 0.262 0.738 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.656 -5.810 -3.981 9.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.145 4.145 3 C 0.028 3.972 4 N -0.249 5.249 5 C 0.067 3.933 6 C -0.552 4.552 7 H 0.080 0.920 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.724 3.276 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.028 4.028 15 C -0.154 4.154 16 C -0.161 4.161 17 C -0.157 4.157 18 C -0.199 4.199 19 H 0.227 0.773 20 H 0.127 0.873 21 H 0.065 0.935 22 H 0.059 0.941 23 H 0.016 0.984 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.102 0.898 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.690 -5.705 -3.514 9.469 hybrid contribution 0.447 0.756 -0.340 0.942 sum -6.242 -4.950 -3.854 8.850 Atomic orbital electron populations 1.24636 0.95668 1.03178 1.03137 1.23530 0.94683 0.98240 0.98026 1.19098 0.83568 1.00376 0.94126 1.62263 1.22949 1.00697 1.39014 1.19811 0.80478 0.97403 0.95650 1.21178 0.92810 1.00771 1.40422 0.91959 1.24956 0.95854 0.97594 0.95954 1.69946 0.98667 1.36880 1.48090 0.86594 0.76842 0.84310 0.79882 1.20173 1.21375 1.20284 1.22323 0.97543 0.89608 0.93366 1.22456 1.00587 0.94543 0.97802 1.22478 0.98560 0.97360 0.97716 1.22268 0.99042 0.96904 0.97455 1.22864 0.99016 0.99270 0.98774 0.77330 0.87305 0.93507 0.94136 0.98402 0.92878 0.91449 0.89773 0.92328 0.92359 0.91978 0.92736 0.91141 0.93020 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -3.98 19.25 29.55 0.57 -3.41 16 2 C -0.14 -2.68 12.63 -37.12 -0.47 -3.15 16 3 C 0.16 3.12 5.14 -6.61 -0.03 3.08 16 4 N -0.53 -11.38 4.40 -230.23 -1.01 -12.40 16 5 C 0.19 4.79 3.87 -4.98 -0.02 4.77 16 6 C -0.51 -14.15 8.29 -34.44 -0.29 -14.43 16 7 H 0.06 1.72 7.25 -52.49 -0.38 1.34 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -26.06 13.29 55.43 0.74 -25.32 16 10 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 14 C 0.08 1.50 2.85 -66.59 -0.19 1.31 16 15 C -0.12 -2.03 6.28 -25.04 -0.16 -2.19 16 16 C -0.12 -1.84 6.91 -24.70 -0.17 -2.01 16 17 C -0.12 -1.90 6.83 -25.07 -0.17 -2.07 16 18 C -0.16 -2.78 5.27 -25.61 -0.14 -2.91 16 19 H 0.21 2.46 7.80 -54.10 -0.42 2.04 16 20 H 0.11 2.34 6.59 -51.93 -0.34 1.99 16 21 H 0.05 0.89 6.97 -51.93 -0.36 0.53 16 22 H 0.04 1.09 6.02 -51.93 -0.31 0.78 16 23 H 0.00 -0.04 6.27 -51.93 -0.33 -0.37 16 24 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 25 H 0.07 1.22 7.28 -51.93 -0.38 0.84 16 26 H 0.08 1.69 6.04 -51.93 -0.31 1.38 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.47 5.29 -51.93 -0.27 1.20 16 LS Contribution 268.00 15.07 4.04 4.04 Total: -1.00 -28.77 268.00 -7.20 -35.98 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -4.78 Total: 0.71 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -1.16 Total: -19.48 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: -0.28 Total: -37.72 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.77 -7.20 -35.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756912480.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.313 kcal (2) G-P(sol) polarization free energy of solvation -28.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds