Wall clock time and date at job start Mon Mar 30 2020 02:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46903 * 109.46979 * 311.23649 * 3 2 1 5 5 C 1.46899 * 111.00039 * 195.68403 * 4 3 2 6 6 C 1.50703 * 109.47191 * 66.04489 * 5 4 3 7 7 H 1.08000 * 120.00023 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00175 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99942 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00188 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46726 * 60.00431 * 10 8 6 12 12 H 1.48497 * 109.47360 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46996 * 300.00541 * 10 8 6 14 14 C 1.46905 * 110.99871 * 71.73226 * 4 3 2 15 15 C 1.54265 * 110.03169 * 189.27890 * 14 4 3 16 16 C 1.54957 * 104.16305 * 217.13572 * 15 14 4 17 17 C 1.54887 * 102.77756 * 37.88915 * 16 15 14 18 18 C 1.53879 * 110.03117 * 72.06590 * 14 4 3 19 19 H 4.40881 * 5.52163 * 179.97438 * 4 1 2 20 20 H 1.08996 * 109.47589 * 191.24088 * 3 2 1 21 21 H 1.08997 * 109.47221 * 71.23638 * 3 2 1 22 22 H 1.08998 * 109.47443 * 186.04659 * 5 4 3 23 23 H 1.09006 * 109.47530 * 306.04765 * 5 4 3 24 24 H 0.97004 * 119.99849 * 179.97438 * 9 8 6 25 25 H 1.08994 * 110.01629 * 310.67555 * 14 4 3 26 26 H 1.09003 * 110.48507 * 335.78664 * 15 14 4 27 27 H 1.09001 * 110.48712 * 98.42422 * 15 14 4 28 28 H 1.09000 * 110.72187 * 279.57813 * 16 15 14 29 29 H 1.08998 * 110.92792 * 156.29744 * 16 15 14 30 30 H 1.09002 * 110.49160 * 203.40302 * 17 16 15 31 31 H 1.09001 * 110.60127 * 80.81574 * 17 16 15 32 32 H 1.09000 * 110.02802 * 238.56440 * 18 14 4 33 33 H 1.08994 * 110.03360 * 359.97438 * 18 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1360 -0.9121 1.0415 5 6 4.5562 -0.6697 1.3282 6 6 4.7185 0.6964 1.9434 7 1 3.8532 1.3219 2.1056 8 6 5.9716 1.1474 2.3001 9 7 7.0254 0.3855 2.1031 10 14 6.1727 2.8405 3.0633 11 1 5.3937 2.9101 4.3256 12 1 7.6084 3.0856 3.3530 13 1 5.6760 3.8720 2.1174 14 6 2.9068 -2.3132 0.6640 15 6 3.2119 -3.2392 1.8595 16 6 3.8640 -4.4883 1.2148 17 6 4.7283 -3.8781 0.0835 18 6 3.8703 -2.7193 -0.4650 19 1 -1.0499 0.0000 0.0003 20 1 3.0089 1.0087 0.2003 21 1 3.0094 -0.3297 -0.9730 22 1 4.9210 -1.4265 2.0226 23 1 5.1279 -0.7211 0.4016 24 1 7.9071 0.7030 2.3537 25 1 1.8747 -2.4484 0.3408 26 1 3.9073 -2.7579 2.5471 27 1 2.2912 -3.5120 2.3755 28 1 3.1032 -5.1521 0.8042 29 1 4.4881 -5.0172 1.9351 30 1 4.9140 -4.6173 -0.6958 31 1 5.6699 -3.5001 0.4817 32 1 3.3056 -3.0525 -1.3357 33 1 4.5076 -1.8767 -0.7331 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756912480.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:43 Heat of formation + Delta-G solvation = 32.088443 kcal Electronic energy + Delta-G solvation = -13740.447226 eV Core-core repulsion = 11573.574627 eV Total energy + Delta-G solvation = -2166.872598 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.28514 -36.45099 -34.82066 -33.33835 -29.66068 -29.59394 -28.58878 -26.15418 -23.64152 -21.52849 -20.23441 -18.97059 -18.44188 -16.95298 -16.79113 -16.23326 -15.68529 -15.31628 -14.71401 -14.42754 -14.07648 -13.68227 -13.16569 -12.76151 -12.74478 -12.47563 -12.31712 -12.06864 -11.95613 -11.87526 -11.41992 -11.38382 -11.31153 -11.07643 -10.92544 -10.54864 -8.95806 -8.18693 -6.27855 1.40599 1.43036 1.50952 1.90866 2.01558 2.41017 3.13344 3.38440 3.64684 3.77355 3.83433 4.13431 4.50158 4.54252 4.55426 4.65591 4.72683 4.79664 4.85246 4.93323 5.05914 5.15591 5.17212 5.23916 5.29074 5.32025 5.52214 5.55102 5.66882 6.10735 6.34735 6.67989 6.79898 6.88659 7.41019 8.91331 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.025439 B = 0.011270 C = 0.008531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.404345 B = 2483.942057 C = 3281.454141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.206 4.206 3 C 0.162 3.838 4 N -0.536 5.536 5 C 0.213 3.787 6 C -0.530 4.530 7 H 0.057 0.943 8 C 0.007 3.993 9 N -0.929 5.929 10 Si 0.962 3.038 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.269 1.269 14 C 0.078 3.922 15 C -0.118 4.118 16 C -0.112 4.112 17 C -0.118 4.118 18 C -0.156 4.156 19 H 0.255 0.745 20 H 0.083 0.917 21 H 0.050 0.950 22 H 0.017 0.983 23 H -0.026 1.026 24 H 0.264 0.736 25 H 0.080 0.920 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.638 -6.266 -4.219 11.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.207 4.207 3 C 0.035 3.965 4 N -0.259 5.259 5 C 0.087 3.913 6 C -0.568 4.568 7 H 0.075 0.925 8 C -0.191 4.191 9 N -0.569 5.569 10 Si 0.787 3.213 11 H -0.196 1.196 12 H -0.207 1.207 13 H -0.194 1.194 14 C -0.031 4.031 15 C -0.156 4.156 16 C -0.150 4.150 17 C -0.156 4.156 18 C -0.195 4.195 19 H 0.271 0.729 20 H 0.101 0.899 21 H 0.068 0.932 22 H 0.035 0.965 23 H -0.008 1.008 24 H 0.073 0.927 25 H 0.098 0.902 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.688 -6.166 -3.761 11.298 hybrid contribution 0.960 0.875 -0.297 1.332 sum -7.728 -5.291 -4.058 10.207 Atomic orbital electron populations 1.25598 0.96356 0.99671 0.99746 1.23353 0.94728 1.01426 1.01149 1.18834 0.85380 0.98625 0.93690 1.62179 1.20309 1.02940 1.40514 1.19363 0.82531 0.95692 0.93682 1.21489 0.92889 1.01847 1.40617 0.92498 1.25803 0.95473 1.01502 0.96333 1.70068 0.99107 1.38727 1.49005 0.85542 0.77009 0.79631 0.79083 1.19631 1.20709 1.19369 1.22456 0.98412 0.87918 0.94291 1.22448 1.00664 0.95405 0.97045 1.22456 0.98907 0.96433 0.97167 1.22258 0.97659 0.97029 0.98662 1.22801 0.98694 0.98741 0.99294 0.72911 0.89889 0.93224 0.96519 1.00810 0.92723 0.90171 0.93355 0.90710 0.89378 0.91061 0.89916 0.94166 0.90590 0.93739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.61 19.25 74.32 1.43 -4.18 16 2 C -0.21 -7.42 12.63 31.13 0.39 -7.03 16 3 C 0.16 6.68 5.14 84.50 0.43 7.11 16 4 N -0.54 -23.92 4.40 -882.30 -3.88 -27.81 16 5 C 0.21 11.28 3.87 85.56 0.33 11.61 16 6 C -0.53 -30.34 8.29 25.60 0.21 -30.13 16 7 H 0.06 3.24 7.25 -2.91 -0.02 3.22 16 8 C 0.01 0.42 5.46 84.65 0.46 0.88 16 9 N -0.93 -55.68 13.29 21.45 0.28 -55.40 16 10 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 14 C 0.08 2.88 2.85 45.64 0.13 3.01 16 15 C -0.12 -4.07 6.28 31.69 0.20 -3.87 16 16 C -0.11 -3.13 6.91 31.91 0.22 -2.91 16 17 C -0.12 -3.71 6.83 31.67 0.22 -3.50 16 18 C -0.16 -5.40 5.27 31.32 0.17 -5.23 16 19 H 0.25 4.55 7.80 -4.42 -0.03 4.51 16 20 H 0.08 3.76 6.59 -2.39 -0.02 3.75 16 21 H 0.05 1.96 6.97 -2.39 -0.02 1.94 16 22 H 0.02 0.96 6.02 -2.39 -0.01 0.95 16 23 H -0.03 -1.46 6.27 -2.38 -0.01 -1.47 16 24 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 25 H 0.08 2.76 7.28 -2.39 -0.02 2.74 16 26 H 0.05 2.02 6.04 -2.39 -0.01 2.00 16 27 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.04 1.81 5.29 -2.39 -0.01 1.80 16 Total: -1.00 -63.85 268.00 3.69 -60.16 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 1.07 Total: 10.56 kcal Atomic # 6 Polarization: -38.43 SS G_CDS: 4.19 Total: -34.24 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -3.60 Total: -83.21 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -63.85 3.69 -60.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756912480.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.249 kcal (2) G-P(sol) polarization free energy of solvation -63.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds