Wall clock time and date at job start Mon Mar 30 2020 02:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46805 * 277.07117 * 3 2 1 5 5 H 1.08997 * 109.54109 * 305.10073 * 4 3 2 6 6 C 1.53124 * 109.50206 * 65.20116 * 4 3 2 7 7 C 1.53123 * 109.15980 * 177.59165 * 6 4 3 8 8 C 1.53036 * 109.27788 * 302.34618 * 7 6 4 9 9 N 1.46846 * 109.52384 * 59.18000 * 8 7 6 10 10 C 1.46903 * 110.99717 * 174.15896 * 9 8 7 11 11 C 1.50695 * 109.47089 * 66.04674 * 10 9 8 12 12 H 1.08002 * 120.00435 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00244 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99615 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00344 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47295 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47330 * 120.00257 * 15 13 11 18 18 H 1.48496 * 109.47136 * 240.00269 * 15 13 11 19 19 C 1.46842 * 111.19700 * 298.25435 * 9 8 7 20 20 H 4.44649 * 5.63302 * 180.02562 * 4 1 2 21 21 H 1.08999 * 109.46750 * 157.07620 * 3 2 1 22 22 H 1.08994 * 109.47056 * 37.06971 * 3 2 1 23 23 H 1.09000 * 109.52368 * 57.68801 * 6 4 3 24 24 H 1.08997 * 109.52219 * 297.49677 * 6 4 3 25 25 H 1.09000 * 109.50367 * 182.40163 * 7 6 4 26 26 H 1.09006 * 109.50264 * 62.28502 * 7 6 4 27 27 H 1.08999 * 109.46075 * 179.19317 * 8 7 6 28 28 H 1.08994 * 109.46383 * 299.17045 * 8 7 6 29 29 H 1.09007 * 109.46443 * 186.04380 * 10 9 8 30 30 H 1.08994 * 109.47048 * 306.04358 * 10 9 8 31 31 H 0.97000 * 120.00273 * 179.97438 * 14 13 11 32 32 H 1.09006 * 109.46447 * 181.75636 * 19 9 8 33 33 H 1.08994 * 109.46873 * 301.72670 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1560 -0.1767 1.4316 5 1 2.7203 0.5906 2.0715 6 6 2.7562 -1.5614 1.9488 7 6 3.3217 -1.7537 3.3587 8 6 4.8420 -1.5828 3.3210 9 7 5.1729 -0.2427 2.8202 10 6 6.6183 0.0073 2.9005 11 6 7.3412 -0.9173 1.9553 12 1 6.7829 -1.6201 1.3546 13 6 8.7155 -0.8655 1.8565 14 7 9.3955 -0.0095 2.5876 15 14 9.6117 -2.0121 0.6854 16 1 8.6256 -2.8725 -0.0164 17 1 10.3665 -1.2107 -0.3112 18 1 10.5554 -2.8643 1.4524 19 6 4.6812 -0.0516 1.4498 20 1 -1.0500 -0.0002 0.0000 21 1 3.0089 0.9473 -0.4003 22 1 3.0097 -0.8191 -0.6194 23 1 3.1594 -2.3278 1.2870 24 1 1.6694 -1.6393 1.9785 25 1 3.0766 -2.7540 3.7158 26 1 2.8885 -1.0112 4.0290 27 1 5.2462 -1.7050 4.3259 28 1 5.2757 -2.3342 2.6613 29 1 6.8239 1.0417 2.6252 30 1 6.9621 -0.1729 3.9190 31 1 10.3623 0.0268 2.5185 32 1 4.9686 0.9384 1.0955 33 1 5.1156 -0.8103 0.7989 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829773513.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:39 Heat of formation + Delta-G solvation = 16.881350 kcal Electronic energy + Delta-G solvation = -13542.753267 eV Core-core repulsion = 11375.221239 eV Total energy + Delta-G solvation = -2167.532027 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.09460 -36.43874 -34.77996 -33.29042 -32.15721 -28.76472 -27.68881 -25.73855 -23.28210 -22.52440 -20.62070 -18.84803 -18.40936 -16.94367 -16.20615 -15.90852 -15.42400 -15.18543 -15.08600 -14.33346 -14.14184 -13.76963 -13.46315 -13.11306 -12.95928 -12.83431 -12.29767 -12.16663 -11.96370 -11.80792 -11.63164 -11.41024 -11.13536 -10.85904 -10.79978 -10.60962 -9.00050 -8.15155 -6.35800 1.35772 1.36998 1.48663 1.96553 2.01278 2.36830 3.08958 3.32927 3.63682 3.92221 4.01291 4.12694 4.39104 4.56478 4.62663 4.71460 4.72936 4.91970 4.95801 5.01493 5.06700 5.14216 5.25802 5.29295 5.30978 5.33422 5.38399 5.55024 5.74585 6.06112 6.28186 6.58707 6.79906 6.86253 7.36093 8.87003 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.041110 B = 0.007911 C = 0.007405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.931910 B = 3538.435697 C = 3780.239465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.207 4.207 3 C -0.008 4.008 4 C -0.069 4.069 5 H 0.072 0.928 6 C -0.107 4.107 7 C -0.107 4.107 8 C 0.062 3.938 9 N -0.544 5.544 10 C 0.199 3.801 11 C -0.555 4.555 12 H 0.057 0.943 13 C 0.011 3.989 14 N -0.927 5.927 15 Si 0.958 3.042 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.278 1.278 19 C 0.073 3.927 20 H 0.246 0.754 21 H 0.092 0.908 22 H 0.088 0.912 23 H 0.055 0.945 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.017 0.983 29 H 0.005 0.995 30 H 0.003 0.997 31 H 0.265 0.735 32 H 0.056 0.944 33 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.498 -2.696 -3.816 15.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.207 4.207 3 C -0.045 4.045 4 C -0.088 4.088 5 H 0.090 0.910 6 C -0.144 4.144 7 C -0.145 4.145 8 C -0.066 4.066 9 N -0.268 5.268 10 C 0.072 3.928 11 C -0.594 4.594 12 H 0.076 0.924 13 C -0.189 4.189 14 N -0.567 5.567 15 Si 0.783 3.217 16 H -0.191 1.191 17 H -0.203 1.203 18 H -0.204 1.204 19 C -0.055 4.055 20 H 0.263 0.737 21 H 0.110 0.890 22 H 0.106 0.894 23 H 0.074 0.926 24 H 0.093 0.907 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.036 0.964 29 H 0.023 0.977 30 H 0.021 0.979 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -14.550 -2.289 -3.461 15.130 hybrid contribution 1.421 -0.861 -0.856 1.869 sum -13.128 -3.150 -4.317 14.174 Atomic orbital electron populations 1.25620 0.96673 1.00552 0.99826 1.23361 0.94957 1.01081 1.01333 1.18714 0.85068 1.03696 0.97013 1.21082 0.93781 0.98446 0.95483 0.90950 1.21580 1.00594 0.95990 0.96251 1.21573 0.93403 1.02064 0.97479 1.21924 0.96392 0.89602 0.98720 1.62344 1.15346 1.27384 1.21699 1.19414 0.83346 0.94988 0.95050 1.22017 0.92635 1.20584 1.24207 0.92447 1.25837 0.98600 0.97028 0.97393 1.70077 1.07637 1.37488 1.41513 0.85501 0.78511 0.78838 0.78809 1.19114 1.20250 1.20373 1.21879 0.94029 0.99961 0.89649 0.73743 0.89003 0.89358 0.92650 0.90746 0.90137 0.91423 0.92793 0.96432 0.97729 0.97860 0.92592 0.92566 0.95811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.29 19.25 74.32 1.43 -2.86 16 2 C -0.21 -5.12 12.37 31.12 0.39 -4.74 16 3 C -0.01 -0.20 5.19 28.79 0.15 -0.05 16 4 C -0.07 -2.08 2.33 -10.74 -0.02 -2.11 16 5 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 6 C -0.11 -2.99 5.05 30.68 0.15 -2.84 16 7 C -0.11 -3.21 6.09 30.65 0.19 -3.02 16 8 C 0.06 2.45 5.14 86.33 0.44 2.89 16 9 N -0.54 -24.05 4.86 -900.95 -4.38 -28.42 16 10 C 0.20 10.73 5.13 85.55 0.44 11.17 16 11 C -0.56 -31.13 7.74 25.60 0.20 -30.93 16 12 H 0.06 3.17 5.84 -2.91 -0.02 3.15 16 13 C 0.01 0.60 5.46 84.66 0.46 1.07 16 14 N -0.93 -55.71 13.29 21.45 0.28 -55.43 16 15 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 19 C 0.07 2.85 4.29 86.33 0.37 3.22 16 20 H 0.25 2.92 7.80 -4.42 -0.03 2.89 16 21 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 22 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 23 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.07 1.84 7.48 -2.39 -0.02 1.82 16 25 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 27 H 0.05 2.18 8.06 -2.39 -0.02 2.16 16 28 H 0.02 0.75 7.03 -2.39 -0.02 0.73 16 29 H 0.00 0.27 8.14 -2.38 -0.02 0.25 16 30 H 0.00 0.19 8.06 -2.39 -0.02 0.17 16 31 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 32 H 0.06 2.25 8.12 -2.38 -0.02 2.23 16 33 H 0.02 1.00 6.57 -2.39 -0.02 0.98 16 Total: -1.00 -63.08 271.31 3.18 -59.89 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 1.05 Total: 6.08 kcal Atomic # 6 Polarization: -32.41 SS G_CDS: 4.20 Total: -28.21 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -4.09 Total: -83.85 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -63.08 3.18 -59.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829773513.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.775 kcal (2) G-P(sol) polarization free energy of solvation -63.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds