Wall clock time and date at job start Mon Mar 30 2020 02:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.73877 * 2 1 4 4 C 1.53367 * 109.60633 * 239.58731 * 2 1 3 5 5 N 1.46947 * 109.46715 * 194.29872 * 4 2 1 6 6 C 1.36934 * 120.67439 * 245.98271 * 5 4 2 7 7 H 1.07997 * 120.00314 * 24.80363 * 6 5 4 8 8 C 1.38814 * 120.00017 * 204.80883 * 6 5 4 9 9 N 1.31619 * 119.99778 * 14.35632 * 8 6 5 10 10 Si 1.86803 * 120.00205 * 194.35799 * 8 6 5 11 11 H 1.48496 * 109.46941 * 89.99788 * 10 8 6 12 12 H 1.48495 * 109.46907 * 209.99683 * 10 8 6 13 13 H 1.48499 * 109.47095 * 329.99684 * 10 8 6 14 14 C 1.47433 * 118.64607 * 66.00790 * 5 4 2 15 15 C 1.51050 * 107.03264 * 314.87849 * 14 5 4 16 16 C 1.34466 * 128.45653 * 191.19952 * 15 14 5 17 17 N 1.35209 * 107.57184 * 180.23856 * 16 15 14 18 18 H 0.97011 * 126.00689 * 179.97438 * 17 16 15 19 19 N 1.40294 * 107.99665 * 359.97372 * 17 16 15 20 20 C 1.30234 * 108.16921 * 359.96532 * 19 17 16 21 21 H 1.09000 * 109.47077 * 299.59775 * 1 2 3 22 22 H 1.09004 * 109.46565 * 59.59286 * 1 2 3 23 23 H 1.08996 * 109.47115 * 179.59153 * 1 2 3 24 24 H 1.09002 * 109.47033 * 314.29734 * 4 2 1 25 25 H 1.08998 * 109.47278 * 74.29618 * 4 2 1 26 26 H 0.96998 * 119.99925 * 180.02562 * 9 8 6 27 27 H 1.08997 * 109.94133 * 195.50008 * 14 5 4 28 28 H 1.08999 * 109.93800 * 74.26112 * 14 5 4 29 29 H 1.08003 * 126.21679 * 359.97302 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8981 1.0259 0.0000 4 6 2.0447 -0.7314 -1.2460 5 7 3.4737 -1.0319 -1.0821 6 6 4.4092 -0.4385 -1.8869 7 1 4.1950 0.5112 -2.3544 8 6 5.6328 -1.0576 -2.1021 9 7 5.7963 -2.3227 -1.7775 10 14 7.0474 -0.0954 -2.8522 11 1 7.8408 0.5420 -1.7708 12 1 7.9170 -1.0168 -3.6268 13 1 6.5089 0.9533 -3.7551 14 6 3.8796 -1.9859 -0.0338 15 6 3.1109 -1.6243 1.2152 16 6 3.2946 -2.0728 2.4694 17 7 2.3694 -1.4776 3.2554 18 1 2.2615 -1.6107 4.2103 19 7 1.5928 -0.6334 2.4476 20 6 2.0363 -0.7195 1.2261 21 1 -0.3633 0.5076 0.8936 22 1 -0.3632 0.5202 -0.8864 23 1 -0.3633 -1.0276 -0.0073 24 1 1.4905 -1.6609 -1.3765 25 1 1.9046 -0.0987 -2.1224 26 1 6.6514 -2.7552 -1.9275 27 1 4.9504 -1.9014 0.1512 28 1 3.6334 -3.0024 -0.3408 29 1 4.0424 -2.7831 2.7900 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931455148.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:59 Heat of formation + Delta-G solvation = 73.242353 kcal Electronic energy + Delta-G solvation = -13677.764116 eV Core-core repulsion = 11409.135742 eV Total energy + Delta-G solvation = -2268.628374 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.17513 -38.07764 -35.29898 -33.01800 -31.76881 -30.85933 -27.38419 -27.04495 -24.27015 -23.01930 -21.27048 -19.83137 -18.81685 -18.04893 -16.70380 -16.27751 -15.48160 -15.46447 -14.88339 -14.59563 -14.13146 -13.64548 -13.26535 -13.11794 -12.72145 -12.59253 -12.53972 -12.24593 -12.06180 -11.84148 -11.59836 -11.29609 -10.62295 -10.19749 -9.16961 -8.70603 -7.83684 -5.26379 1.05180 1.50757 1.52266 1.60797 1.92132 2.12087 2.55128 3.32520 3.67927 3.74669 4.05264 4.27724 4.37000 4.59212 4.77814 4.82737 4.96590 5.05297 5.09040 5.19591 5.29596 5.37542 5.46309 5.62801 5.75004 5.85038 6.39531 6.60525 6.85972 7.18269 7.87416 8.40923 9.25179 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.039962 B = 0.011041 C = 0.009439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.501839 B = 2535.367633 C = 2965.805302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.029 4.029 3 H 0.076 0.924 4 C 0.153 3.847 5 N -0.613 5.613 6 C -0.260 4.260 7 H 0.072 0.928 8 C -0.051 4.051 9 N -0.937 5.937 10 Si 0.969 3.031 11 H -0.289 1.289 12 H -0.294 1.294 13 H -0.268 1.268 14 C 0.261 3.739 15 C -0.277 4.277 16 C 0.066 3.934 17 N -0.478 5.478 18 H 0.451 0.549 19 N -0.317 5.317 20 C 0.085 3.915 21 H 0.060 0.940 22 H 0.079 0.921 23 H 0.049 0.951 24 H 0.026 0.974 25 H 0.070 0.930 26 H 0.250 0.750 27 H 0.060 0.940 28 H 0.006 0.994 29 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.472 1.570 7.280 9.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.052 4.052 3 H 0.094 0.906 4 C 0.026 3.974 5 N -0.335 5.335 6 C -0.390 4.390 7 H 0.089 0.911 8 C -0.246 4.246 9 N -0.584 5.584 10 Si 0.797 3.203 11 H -0.216 1.216 12 H -0.220 1.220 13 H -0.193 1.193 14 C 0.134 3.866 15 C -0.289 4.289 16 C -0.081 4.081 17 N -0.189 5.189 18 H 0.298 0.702 19 N -0.140 5.140 20 C -0.082 4.082 21 H 0.079 0.921 22 H 0.097 0.903 23 H 0.068 0.932 24 H 0.044 0.956 25 H 0.089 0.911 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.023 0.977 29 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -7.176 2.009 8.000 10.934 hybrid contribution 1.615 -0.353 -0.388 1.698 sum -5.562 1.656 7.612 9.572 Atomic orbital electron populations 1.21609 0.91995 1.01895 1.02678 1.20317 0.96769 0.98030 0.90077 0.90586 1.21051 0.84170 0.97051 0.95104 1.44377 1.01667 1.51033 1.36458 1.19577 0.95675 1.00787 1.23000 0.91078 1.25737 1.01646 0.96066 1.01150 1.70160 1.24185 1.10422 1.53638 0.85238 0.79347 0.77836 0.77857 1.21563 1.22036 1.19284 1.18857 0.95899 0.89744 0.82067 1.21358 1.03795 1.06183 0.97589 1.22334 0.95783 0.99598 0.90356 1.46230 1.26117 1.35695 1.10866 0.70198 1.76795 1.18993 1.15757 1.02451 1.22390 0.95007 0.97224 0.93615 0.92142 0.90252 0.93195 0.95592 0.91144 0.94052 0.92169 0.97667 0.77738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.60 9.06 71.98 0.65 -2.95 15 2 C -0.03 -1.10 3.28 -11.35 -0.04 -1.13 15 3 H 0.08 2.89 8.14 -2.39 -0.02 2.88 15 4 C 0.15 6.51 5.74 86.42 0.50 7.01 15 5 N -0.61 -31.82 2.97 -701.45 -2.08 -33.90 15 6 C -0.26 -14.47 9.63 84.03 0.81 -13.67 15 7 H 0.07 3.81 7.87 -2.91 -0.02 3.79 15 8 C -0.05 -2.86 5.01 84.86 0.43 -2.43 15 9 N -0.94 -55.09 10.97 21.65 0.24 -54.86 15 10 Si 0.97 44.97 29.58 68.60 2.03 47.00 15 11 H -0.29 -13.30 7.11 99.48 0.71 -12.59 15 12 H -0.29 -13.64 7.11 99.48 0.71 -12.94 15 13 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 14 C 0.26 13.17 5.38 85.57 0.46 13.63 15 15 C -0.28 -11.69 5.99 -20.07 -0.12 -11.81 15 16 C 0.07 2.14 11.95 83.31 1.00 3.13 15 17 N -0.48 -14.04 7.37 -57.94 -0.43 -14.47 15 18 H 0.45 9.05 8.96 -213.18 -1.91 7.14 15 19 N -0.32 -11.54 12.56 -47.12 -0.59 -12.13 15 20 C 0.09 3.44 6.48 43.41 0.28 3.72 15 21 H 0.06 1.69 8.14 -2.39 -0.02 1.67 15 22 H 0.08 1.93 8.14 -2.39 -0.02 1.91 15 23 H 0.05 1.46 8.14 -2.39 -0.02 1.44 15 24 H 0.03 1.11 8.07 -2.39 -0.02 1.09 15 25 H 0.07 2.83 7.93 -2.39 -0.02 2.81 15 26 H 0.25 14.20 8.31 -92.71 -0.77 13.43 15 27 H 0.06 3.35 6.30 -2.39 -0.02 3.34 15 28 H 0.01 0.30 8.14 -2.39 -0.02 0.28 15 29 H 0.21 5.05 8.06 -2.91 -0.02 5.02 15 Total: -1.00 -67.09 243.49 2.37 -64.72 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -0.76 Total: 8.13 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 3.96 Total: -4.49 kcal Atomic # 7 Polarization: -112.49 SS G_CDS: -2.86 Total: -115.36 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -67.09 2.37 -64.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931455148.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.963 kcal (2) G-P(sol) polarization free energy of solvation -67.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds