Wall clock time and date at job start Mon Mar 30 2020 02:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.60485 * 2 1 4 4 C 1.53373 * 109.60696 * 120.49634 * 2 1 3 5 5 N 1.46926 * 109.47545 * 165.71331 * 4 2 1 6 6 C 1.36929 * 120.66566 * 113.98233 * 5 4 2 7 7 H 1.08006 * 120.00587 * 334.94578 * 6 5 4 8 8 C 1.38813 * 119.99901 * 154.94687 * 6 5 4 9 9 N 1.31614 * 119.99925 * 344.63217 * 8 6 5 10 10 Si 1.86798 * 119.99890 * 164.63391 * 8 6 5 11 11 H 1.48497 * 109.47566 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47363 * 120.00020 * 10 8 6 13 13 H 1.48506 * 109.47193 * 239.99703 * 10 8 6 14 14 C 1.47431 * 118.65647 * 294.00908 * 5 4 2 15 15 C 1.51050 * 107.04046 * 45.08039 * 14 5 4 16 16 C 1.34469 * 128.45968 * 168.85343 * 15 14 5 17 17 N 1.35211 * 107.57178 * 179.72967 * 16 15 14 18 18 H 0.97002 * 126.01026 * 180.02562 * 17 16 15 19 19 N 1.40299 * 107.99499 * 0.04142 * 17 16 15 20 20 C 1.30231 * 108.17264 * 0.02947 * 19 17 16 21 21 H 1.09000 * 109.47544 * 180.32616 * 1 2 3 22 22 H 1.09000 * 109.47198 * 60.32676 * 1 2 3 23 23 H 1.08999 * 109.47094 * 300.32873 * 1 2 3 24 24 H 1.09006 * 109.47302 * 285.72512 * 4 2 1 25 25 H 1.09001 * 109.47321 * 45.72810 * 4 2 1 26 26 H 0.97005 * 119.99927 * 179.97438 * 9 8 6 27 27 H 1.09002 * 109.93579 * 285.70191 * 14 5 4 28 28 H 1.08996 * 110.01260 * 164.50401 * 14 5 4 29 29 H 1.07997 * 126.21714 * 359.76975 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8957 1.0269 0.0000 4 6 2.0446 -0.7332 1.2449 5 7 3.4735 -1.0333 1.0809 6 6 4.4086 -0.4404 1.8865 7 1 4.1956 0.5109 2.3516 8 6 5.6304 -1.0618 2.1054 9 7 5.7858 -2.3331 1.8022 10 14 7.0540 -0.0937 2.8303 11 1 6.6246 1.3056 3.0806 12 1 7.4771 -0.7184 4.1093 13 1 8.1925 -0.0986 1.8767 14 6 3.8800 -1.9853 0.0312 15 6 3.1111 -1.6225 -1.2173 16 6 3.2946 -2.0697 -2.4721 17 7 2.3687 -1.4742 -3.2572 18 1 2.2604 -1.6064 -4.2120 19 7 1.5922 -0.6309 -2.4482 20 6 2.0363 -0.7178 -1.2270 21 1 -0.3634 -1.0276 0.0058 22 1 -0.3633 0.5087 -0.8929 23 1 -0.3633 0.5189 0.8870 24 1 1.9042 -0.1020 2.1224 25 1 1.4908 -1.6631 1.3739 26 1 6.6397 -2.7673 1.9548 27 1 3.6345 -3.0025 0.3365 28 1 4.9508 -1.9013 -0.1542 29 1 4.0447 -2.7767 -2.7943 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931455149.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:00 Heat of formation + Delta-G solvation = 93.679467 kcal Electronic energy + Delta-G solvation = -13675.677122 eV Core-core repulsion = 11407.934967 eV Total energy + Delta-G solvation = -2267.742155 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.67978 -36.34660 -33.57333 -31.15732 -30.18532 -29.26193 -25.72942 -25.19508 -22.69356 -21.22100 -19.76562 -18.18372 -17.21217 -16.25141 -14.78528 -14.69325 -13.89661 -13.66372 -13.30161 -12.84105 -12.58797 -12.06276 -11.61424 -11.35069 -11.12142 -10.92137 -10.76309 -10.62344 -10.31039 -9.88234 -9.83719 -9.68205 -8.76547 -8.57244 -7.57128 -6.69729 -5.76562 -3.15795 2.50586 3.39758 3.42944 3.47981 3.50167 3.50981 4.52403 5.19548 5.33801 5.48469 5.51607 5.70586 5.79788 6.02996 6.22726 6.32894 6.39651 6.58930 6.66149 6.69089 6.82670 6.95002 7.26306 7.44338 7.66490 7.82936 7.87527 8.31903 8.44114 9.23603 9.86715 10.43367 11.33988 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.039881 B = 0.011042 C = 0.009451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.912552 B = 2535.076300 C = 2962.081467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.034 4.034 3 H 0.081 0.919 4 C 0.154 3.846 5 N -0.594 5.594 6 C -0.247 4.247 7 H 0.069 0.931 8 C 0.000 4.000 9 N -0.908 5.908 10 Si 0.903 3.097 11 H -0.278 1.278 12 H -0.290 1.290 13 H -0.290 1.290 14 C 0.245 3.755 15 C -0.229 4.229 16 C 0.035 3.965 17 N -0.500 5.500 18 H 0.429 0.571 19 N -0.308 5.308 20 C 0.100 3.900 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.028 0.972 26 H 0.253 0.747 27 H 0.034 0.966 28 H 0.089 0.911 29 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.873 0.904 -6.342 8.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.057 4.057 3 H 0.099 0.901 4 C 0.027 3.973 5 N -0.315 5.315 6 C -0.377 4.377 7 H 0.087 0.913 8 C -0.198 4.198 9 N -0.553 5.553 10 Si 0.733 3.267 11 H -0.203 1.203 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.119 3.881 15 C -0.241 4.241 16 C -0.109 4.109 17 N -0.210 5.210 18 H 0.271 0.729 19 N -0.130 5.130 20 C -0.068 4.068 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.107 0.893 29 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.530 1.328 -7.036 9.690 hybrid contribution 1.475 -0.107 0.139 1.485 sum -5.055 1.221 -6.896 8.637 Atomic orbital electron populations 1.21695 0.94890 1.01545 1.01223 1.20420 0.94500 0.99092 0.91663 0.90063 1.20919 0.86198 0.96761 0.93458 1.44103 1.00211 1.51142 1.36049 1.19261 0.94910 1.00439 1.23084 0.91321 1.24986 0.99490 0.95178 1.00117 1.70022 1.24041 1.08688 1.52540 0.86203 0.82668 0.79492 0.78309 1.20291 1.21752 1.21662 1.19308 0.97120 0.91178 0.80510 1.21561 1.02153 1.03168 0.97266 1.21914 0.96331 1.01020 0.91617 1.46217 1.27481 1.37369 1.09924 0.72853 1.76851 1.18417 1.14939 1.02813 1.22224 0.94899 0.96936 0.92757 0.93034 0.92790 0.92549 0.91827 0.95400 0.93695 0.94860 0.89267 0.81370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.06 37.15 0.34 -1.77 15 2 C -0.03 -0.65 3.28 -91.48 -0.30 -0.95 15 3 H 0.08 1.58 8.14 -51.93 -0.42 1.16 15 4 C 0.15 3.29 5.74 -3.62 -0.02 3.27 15 5 N -0.59 -15.12 2.96 -173.07 -0.51 -15.64 15 6 C -0.25 -6.79 9.62 -15.06 -0.14 -6.94 15 7 H 0.07 1.84 7.88 -52.48 -0.41 1.43 15 8 C 0.00 0.00 4.99 -17.43 -0.09 -0.08 15 9 N -0.91 -26.03 11.06 55.49 0.61 -25.41 15 10 Si 0.90 21.66 29.58 -169.99 -5.03 16.63 15 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 15 14 C 0.25 6.02 5.37 -4.51 -0.02 5.99 15 15 C -0.23 -4.89 5.99 -104.93 -0.63 -5.51 15 16 C 0.04 0.61 11.95 -17.39 -0.21 0.40 15 17 N -0.50 -8.11 7.37 30.34 0.22 -7.88 15 18 H 0.43 5.11 8.96 -182.44 -1.64 3.48 15 19 N -0.31 -5.94 12.56 33.76 0.42 -5.52 15 20 C 0.10 2.08 6.48 -82.32 -0.53 1.54 15 21 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 23 H 0.06 0.76 8.14 -51.93 -0.42 0.33 15 24 H 0.06 1.28 7.93 -51.93 -0.41 0.87 15 25 H 0.03 0.59 8.07 -51.93 -0.42 0.17 15 26 H 0.25 6.99 8.31 -40.82 -0.34 6.65 15 27 H 0.03 0.86 8.14 -51.93 -0.42 0.44 15 28 H 0.09 2.39 6.36 -51.93 -0.33 2.06 15 29 H 0.17 2.34 8.06 -52.49 -0.42 1.92 15 LS Contribution 243.61 15.07 3.67 3.67 Total: -1.00 -31.11 243.61 -7.10 -38.21 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -4.88 Total: -0.02 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -1.61 Total: -4.04 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.75 Total: -54.45 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -31.11 -7.10 -38.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931455149.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.886 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds