Wall clock time and date at job start Mon Mar 30 2020 02:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47144 * 2 1 4 4 C 1.50706 * 109.47016 * 119.99159 * 2 1 3 5 5 N 1.31397 * 125.15188 * 60.02799 * 4 2 1 6 6 N 1.40463 * 107.17620 * 180.02562 * 5 4 2 7 7 H 0.96999 * 127.01551 * 180.02562 * 6 5 4 8 8 C 1.37018 * 105.96777 * 359.97438 * 6 5 4 9 9 C 1.40367 * 126.31640 * 180.02562 * 8 6 5 10 10 H 1.08004 * 120.00203 * 179.97438 * 9 8 6 11 11 C 1.40275 * 120.00014 * 359.97438 * 9 8 6 12 12 N 1.30640 * 119.99705 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99898 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47234 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.46943 * 119.99765 * 13 11 9 16 16 H 1.48497 * 109.46895 * 239.99569 * 13 11 9 17 17 N 1.32220 * 125.16043 * 239.72466 * 4 2 1 18 18 C 1.53001 * 109.47447 * 239.99412 * 2 1 3 19 19 C 1.52999 * 117.49597 * 128.62055 * 18 2 1 20 20 C 1.52995 * 60.00109 * 252.51327 * 19 18 2 21 21 H 1.08990 * 109.47552 * 300.00336 * 1 2 3 22 22 H 1.09002 * 109.46958 * 60.00701 * 1 2 3 23 23 H 1.09001 * 109.46895 * 180.02562 * 1 2 3 24 24 H 0.96997 * 119.99405 * 180.02562 * 12 11 9 25 25 H 1.08993 * 115.55128 * 274.32716 * 18 2 1 26 26 H 1.08997 * 117.50140 * 0.02562 * 19 18 2 27 27 H 1.09006 * 117.49420 * 145.01981 * 19 18 2 28 28 H 1.09000 * 117.49686 * 252.51547 * 20 19 18 29 29 H 1.09000 * 117.49887 * 107.49498 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7785 -1.9623 1.5381 6 7 2.4275 -2.2305 2.7546 7 1 2.4303 -3.0688 3.2425 8 6 3.0567 -1.0665 3.1107 9 6 3.8338 -0.8600 4.2613 10 1 4.2855 0.1042 4.4419 11 6 4.0237 -1.9060 5.1764 12 7 3.4768 -3.0722 4.9581 13 14 5.0573 -1.6310 6.7080 14 1 5.5601 -0.2338 6.7215 15 1 4.2264 -1.8703 7.9154 16 1 6.2073 -2.5704 6.7042 17 7 2.7999 -0.1698 2.1617 18 6 2.0401 -0.7214 -1.2491 19 6 3.0742 0.0051 -2.1116 20 6 1.6359 -0.1497 -2.6095 21 1 -0.3634 0.5138 0.8898 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 3.6078 -3.7954 5.5912 25 1 2.1269 -1.8045 -1.1640 26 1 3.3915 0.9966 -1.7888 27 1 3.8417 -0.6003 -2.5939 28 1 1.4571 -0.8568 -3.4195 29 1 1.0066 0.7403 -2.6147 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953067899.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:22 Heat of formation + Delta-G solvation = 73.446921 kcal Electronic energy + Delta-G solvation = -13122.514584 eV Core-core repulsion = 10853.895080 eV Total energy + Delta-G solvation = -2268.619504 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.83138 -37.40048 -34.01732 -32.10292 -30.07844 -28.91671 -25.93057 -24.14198 -21.95714 -21.17492 -19.84925 -18.33551 -17.63143 -15.45258 -15.34737 -14.87523 -14.21954 -13.50366 -13.08088 -13.04760 -12.49057 -11.86300 -11.60119 -11.42324 -11.36821 -11.28076 -10.85384 -10.50799 -10.32916 -9.94811 -9.81647 -9.62978 -9.51111 -8.17905 -8.14567 -7.91374 -7.12988 -4.85794 2.82538 2.98321 3.06650 3.50013 3.77468 4.10381 4.28509 4.75432 5.03379 5.26203 5.28267 5.38289 5.62141 5.86411 5.89424 5.98026 6.06174 6.20128 6.27425 6.40697 6.48329 6.65679 6.76827 6.97116 7.08129 7.64145 8.09351 8.25835 8.51773 8.58349 9.43060 9.93499 10.18731 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.065688 B = 0.007354 C = 0.007171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.152259 B = 3806.791623 C = 3903.939560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.042 3.958 3 H 0.081 0.919 4 C 0.221 3.779 5 N -0.405 5.405 6 N -0.508 5.508 7 H 0.439 0.561 8 C 0.410 3.590 9 C -0.428 4.428 10 H 0.103 0.897 11 C 0.072 3.928 12 N -0.836 5.836 13 Si 0.944 3.056 14 H -0.257 1.257 15 H -0.272 1.272 16 H -0.272 1.272 17 N -0.630 5.630 18 C -0.130 4.130 19 C -0.181 4.181 20 C -0.183 4.183 21 H 0.052 0.948 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.292 0.708 25 H 0.106 0.894 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.234 2.256 -5.239 5.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.021 3.979 3 H 0.100 0.900 4 C -0.063 4.063 5 N -0.240 5.240 6 N -0.234 5.234 7 H 0.293 0.707 8 C 0.155 3.845 9 C -0.469 4.469 10 H 0.121 0.879 11 C -0.145 4.145 12 N -0.469 5.469 13 Si 0.767 3.233 14 H -0.180 1.180 15 H -0.197 1.197 16 H -0.197 1.197 17 N -0.368 5.368 18 C -0.149 4.149 19 C -0.218 4.218 20 C -0.220 4.220 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.103 0.897 25 H 0.124 0.876 26 H 0.112 0.888 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.587 1.911 -5.622 6.147 hybrid contribution 0.586 -0.671 1.213 1.505 sum -1.001 1.240 -4.409 4.688 Atomic orbital electron populations 1.21703 0.94369 1.02280 1.00779 1.18778 0.94757 0.97210 0.87200 0.90043 1.23191 0.96614 0.90329 0.96159 1.77539 1.26691 1.17191 1.02597 1.48677 1.42476 1.14500 1.17752 0.70739 1.20796 0.89762 0.81290 0.92624 1.18713 1.27392 0.99594 1.01183 0.87943 1.26052 0.94577 0.93607 1.00222 1.68759 1.38146 1.03169 1.36852 0.85663 0.78943 0.79955 0.78696 1.18015 1.19688 1.19696 1.70702 1.26909 1.32944 1.06273 1.22286 1.02617 0.99657 0.90370 1.22978 0.92176 1.02213 1.04410 1.22921 0.98236 1.03172 0.97690 0.92888 0.92803 0.92123 0.89687 0.87598 0.88780 0.89392 0.89303 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 9.02 37.16 0.33 -1.94 15 2 C 0.04 0.82 3.01 -91.77 -0.28 0.54 15 3 H 0.08 1.57 7.90 -51.93 -0.41 1.16 15 4 C 0.22 5.59 6.58 -157.16 -1.03 4.56 15 5 N -0.40 -10.77 12.76 32.36 0.41 -10.36 15 6 N -0.51 -14.13 7.16 31.10 0.22 -13.91 15 7 H 0.44 11.85 6.38 -182.32 -1.16 10.69 15 8 C 0.41 11.73 7.67 -155.88 -1.20 10.53 15 9 C -0.43 -11.49 9.47 -38.02 -0.36 -11.85 15 10 H 0.10 2.66 7.85 -52.48 -0.41 2.25 15 11 C 0.07 1.75 5.50 -17.29 -0.10 1.65 15 12 N -0.84 -20.50 10.72 55.56 0.60 -19.91 15 13 Si 0.94 18.12 29.56 -169.99 -5.03 13.09 15 14 H -0.26 -4.88 7.11 56.52 0.40 -4.48 15 15 H -0.27 -5.11 7.11 56.52 0.40 -4.70 15 16 H -0.27 -5.11 7.11 56.52 0.40 -4.71 15 17 N -0.63 -17.68 11.24 -10.11 -0.11 -17.79 15 18 C -0.13 -2.26 5.14 -90.62 -0.47 -2.73 15 19 C -0.18 -2.71 10.18 -26.73 -0.27 -2.98 15 20 C -0.18 -2.46 9.73 -26.73 -0.26 -2.73 15 21 H 0.05 0.93 8.14 -51.93 -0.42 0.50 15 22 H 0.05 0.74 7.29 -51.93 -0.38 0.36 15 23 H 0.06 1.08 8.14 -51.93 -0.42 0.66 15 24 H 0.29 6.39 8.29 -40.82 -0.34 6.05 15 25 H 0.11 2.03 8.07 -51.93 -0.42 1.61 15 26 H 0.09 1.38 8.05 -51.93 -0.42 0.96 15 27 H 0.09 1.23 8.14 -51.93 -0.42 0.81 15 28 H 0.09 1.07 8.14 -51.93 -0.42 0.64 15 29 H 0.09 1.13 7.61 -51.93 -0.40 0.73 15 LS Contribution 253.06 15.07 3.81 3.81 Total: -1.00 -29.32 253.06 -8.14 -37.46 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -4.42 Total: 12.54 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -3.62 Total: -4.93 kcal Atomic # 7 Polarization: -63.09 SS G_CDS: 1.12 Total: -61.98 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.32 -8.14 -37.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067899.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.905 kcal (2) G-P(sol) polarization free energy of solvation -29.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds