Wall clock time and date at job start Mon Mar 30 2020 02:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47144 * 2 1 4 4 C 1.50706 * 109.47016 * 119.99159 * 2 1 3 5 5 N 1.31397 * 125.15188 * 60.02799 * 4 2 1 6 6 N 1.40463 * 107.17620 * 180.02562 * 5 4 2 7 7 H 0.96999 * 127.01551 * 180.02562 * 6 5 4 8 8 C 1.37018 * 105.96777 * 359.97438 * 6 5 4 9 9 C 1.40367 * 126.31640 * 180.02562 * 8 6 5 10 10 H 1.08004 * 120.00203 * 179.97438 * 9 8 6 11 11 C 1.40275 * 120.00014 * 359.97438 * 9 8 6 12 12 N 1.30640 * 119.99705 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99898 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47234 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.46943 * 119.99765 * 13 11 9 16 16 H 1.48497 * 109.46895 * 239.99569 * 13 11 9 17 17 N 1.32220 * 125.16043 * 239.72466 * 4 2 1 18 18 C 1.53001 * 109.47447 * 239.99412 * 2 1 3 19 19 C 1.52999 * 117.49597 * 128.62055 * 18 2 1 20 20 C 1.52995 * 60.00109 * 252.51327 * 19 18 2 21 21 H 1.08990 * 109.47552 * 300.00336 * 1 2 3 22 22 H 1.09002 * 109.46958 * 60.00701 * 1 2 3 23 23 H 1.09001 * 109.46895 * 180.02562 * 1 2 3 24 24 H 0.96997 * 119.99405 * 180.02562 * 12 11 9 25 25 H 1.08993 * 115.55128 * 274.32716 * 18 2 1 26 26 H 1.08997 * 117.50140 * 0.02562 * 19 18 2 27 27 H 1.09006 * 117.49420 * 145.01981 * 19 18 2 28 28 H 1.09000 * 117.49686 * 252.51547 * 20 19 18 29 29 H 1.09000 * 117.49887 * 107.49498 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7785 -1.9623 1.5381 6 7 2.4275 -2.2305 2.7546 7 1 2.4303 -3.0688 3.2425 8 6 3.0567 -1.0665 3.1107 9 6 3.8338 -0.8600 4.2613 10 1 4.2855 0.1042 4.4419 11 6 4.0237 -1.9060 5.1764 12 7 3.4768 -3.0722 4.9581 13 14 5.0573 -1.6310 6.7080 14 1 5.5601 -0.2338 6.7215 15 1 4.2264 -1.8703 7.9154 16 1 6.2073 -2.5704 6.7042 17 7 2.7999 -0.1698 2.1617 18 6 2.0401 -0.7214 -1.2491 19 6 3.0742 0.0051 -2.1116 20 6 1.6359 -0.1497 -2.6095 21 1 -0.3634 0.5138 0.8898 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 3.6078 -3.7954 5.5912 25 1 2.1269 -1.8045 -1.1640 26 1 3.3915 0.9966 -1.7888 27 1 3.8417 -0.6003 -2.5939 28 1 1.4571 -0.8568 -3.4195 29 1 1.0066 0.7403 -2.6147 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000953067899.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:22 Heat of formation + Delta-G solvation = 55.484286 kcal Electronic energy + Delta-G solvation = -13123.293502 eV Core-core repulsion = 10853.895080 eV Total energy + Delta-G solvation = -2269.398422 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.83025 -38.73929 -35.93077 -33.68039 -32.13893 -30.79408 -27.92388 -25.63393 -23.14975 -22.93780 -21.56658 -20.12533 -19.58367 -17.42883 -16.94556 -16.42509 -15.74186 -15.29968 -14.82052 -14.58278 -13.93960 -13.47677 -13.41937 -13.13726 -12.92379 -12.52660 -12.18759 -12.07201 -11.86492 -11.73307 -11.44090 -11.17835 -10.79299 -10.27475 -10.23442 -9.93286 -9.00790 -6.91482 1.14995 1.40532 1.60078 1.66523 2.15679 2.31945 2.75222 3.00364 3.27431 3.59702 3.92024 4.08970 4.22888 4.46588 4.50356 4.62287 4.80887 4.85129 4.93480 5.03912 5.06229 5.22342 5.29402 5.33529 5.47925 5.63412 6.06749 6.22982 6.53425 6.59003 7.33757 8.03787 8.16840 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.065688 B = 0.007354 C = 0.007171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.152259 B = 3806.791623 C = 3903.939560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.041 3.959 3 H 0.084 0.916 4 C 0.220 3.780 5 N -0.425 5.425 6 N -0.524 5.524 7 H 0.436 0.564 8 C 0.381 3.619 9 C -0.459 4.459 10 H 0.102 0.898 11 C 0.037 3.963 12 N -0.851 5.851 13 Si 1.025 2.975 14 H -0.254 1.254 15 H -0.259 1.259 16 H -0.260 1.260 17 N -0.662 5.662 18 C -0.161 4.161 19 C -0.183 4.183 20 C -0.144 4.144 21 H 0.041 0.959 22 H 0.095 0.905 23 H 0.047 0.953 24 H 0.306 0.694 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.000 2.773 -5.396 6.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.020 3.980 3 H 0.102 0.898 4 C -0.063 4.063 5 N -0.260 5.260 6 N -0.250 5.250 7 H 0.290 0.710 8 C 0.128 3.872 9 C -0.500 4.500 10 H 0.120 0.880 11 C -0.179 4.179 12 N -0.483 5.483 13 Si 0.843 3.157 14 H -0.178 1.178 15 H -0.184 1.184 16 H -0.184 1.184 17 N -0.401 5.401 18 C -0.181 4.181 19 C -0.220 4.220 20 C -0.181 4.181 21 H 0.060 0.940 22 H 0.114 0.886 23 H 0.066 0.934 24 H 0.118 0.882 25 H 0.098 0.902 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.127 0.873 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.379 2.409 -5.810 6.439 hybrid contribution 0.519 -0.878 1.269 1.628 sum -0.859 1.531 -4.541 4.869 Atomic orbital electron populations 1.21661 0.92417 1.01922 1.02258 1.19002 0.96334 0.96774 0.85859 0.89762 1.24260 0.95033 0.90053 0.96984 1.77483 1.27715 1.18191 1.02652 1.48677 1.43468 1.14375 1.18452 0.71023 1.21354 0.90483 0.81826 0.93554 1.19072 1.28280 1.00752 1.01875 0.87966 1.27142 0.95134 0.92565 1.03016 1.68758 1.37585 1.03954 1.37996 0.84503 0.77177 0.80062 0.73968 1.17775 1.18370 1.18419 1.70728 1.28534 1.33550 1.07278 1.22064 1.06330 0.98209 0.91482 1.23085 0.93350 1.01933 1.03646 1.23054 0.96813 1.03404 0.94849 0.94006 0.88645 0.93353 0.88154 0.90206 0.88592 0.88707 0.87257 0.86831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.12 9.02 71.98 0.65 -3.47 15 2 C 0.04 1.62 3.01 -11.54 -0.03 1.58 15 3 H 0.08 3.20 7.90 -2.39 -0.02 3.18 15 4 C 0.22 11.47 6.58 138.74 0.91 12.39 15 5 N -0.43 -23.47 12.76 -51.55 -0.66 -24.12 15 6 N -0.52 -30.20 7.16 -55.51 -0.40 -30.60 15 7 H 0.44 24.42 6.38 -213.09 -1.36 23.06 15 8 C 0.38 22.53 7.67 133.83 1.03 23.55 15 9 C -0.46 -25.14 9.47 23.28 0.22 -24.92 15 10 H 0.10 5.42 7.85 -2.91 -0.02 5.40 15 11 C 0.04 1.76 5.50 85.37 0.47 2.23 15 12 N -0.85 -41.64 10.72 21.88 0.23 -41.40 15 13 Si 1.02 35.93 29.56 68.60 2.03 37.96 15 14 H -0.25 -8.78 7.11 99.48 0.71 -8.07 15 15 H -0.26 -8.58 7.11 99.48 0.71 -7.87 15 16 H -0.26 -8.61 7.11 99.48 0.71 -7.90 15 17 N -0.66 -38.35 11.24 -185.91 -2.09 -40.44 15 18 C -0.16 -5.49 5.14 -10.79 -0.06 -5.55 15 19 C -0.18 -5.17 10.18 30.59 0.31 -4.86 15 20 C -0.14 -3.41 9.73 30.59 0.30 -3.11 15 21 H 0.04 1.44 8.14 -2.39 -0.02 1.42 15 22 H 0.09 2.33 7.29 -2.39 -0.02 2.31 15 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 15 24 H 0.31 13.12 8.29 -92.71 -0.77 12.35 15 25 H 0.08 3.12 8.07 -2.39 -0.02 3.11 15 26 H 0.10 2.66 8.05 -2.39 -0.02 2.65 15 27 H 0.09 2.51 8.14 -2.38 -0.02 2.49 15 28 H 0.11 2.18 8.14 -2.39 -0.02 2.16 15 29 H 0.11 2.24 7.61 -2.39 -0.02 2.22 15 Total: -1.00 -65.31 253.06 2.71 -62.60 By element: Atomic # 1 Polarization: 38.38 SS G_CDS: -0.20 Total: 38.18 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 3.80 Total: -2.16 kcal Atomic # 7 Polarization: -133.66 SS G_CDS: -2.91 Total: -136.57 kcal Atomic # 14 Polarization: 35.93 SS G_CDS: 2.03 Total: 37.96 kcal Total: -65.31 2.71 -62.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067899.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.080 kcal (2) G-P(sol) polarization free energy of solvation -65.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds