Wall clock time and date at job start Mon Mar 30 2020 02:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47251 * 109.47804 * 3 2 1 5 5 C 1.53005 * 109.46963 * 349.47768 * 3 2 1 6 6 N 1.46901 * 109.47480 * 229.48112 * 3 2 1 7 7 C 1.47446 * 110.99710 * 56.99240 * 6 3 2 8 8 C 1.54325 * 107.23219 * 236.74476 * 7 6 3 9 9 C 1.55141 * 103.17551 * 337.63007 * 8 7 6 10 10 H 1.08995 * 110.99458 * 277.64831 * 9 8 7 11 11 C 1.50702 * 110.98942 * 153.83005 * 9 8 7 12 12 H 1.07998 * 120.00164 * 275.47977 * 11 9 8 13 13 C 1.37875 * 120.00114 * 95.48079 * 11 9 8 14 14 N 1.31514 * 120.00509 * 175.02524 * 13 11 9 15 15 Si 1.86808 * 119.99677 * 355.01791 * 13 11 9 16 16 H 1.48510 * 109.46691 * 94.76663 * 15 13 11 17 17 H 1.48493 * 109.47412 * 214.76159 * 15 13 11 18 18 H 1.48496 * 109.47244 * 334.76800 * 15 13 11 19 19 C 1.47845 * 110.99792 * 296.15409 * 6 3 2 20 20 H 4.44644 * 5.63377 * 180.02562 * 4 1 2 21 21 H 1.09008 * 109.47304 * 180.02562 * 4 3 2 22 22 H 1.08998 * 109.47083 * 299.99689 * 4 3 2 23 23 H 1.08997 * 109.47409 * 60.00247 * 4 3 2 24 24 H 1.08999 * 109.47122 * 305.15027 * 5 3 2 25 25 H 1.09006 * 109.47132 * 65.15329 * 5 3 2 26 26 H 1.09003 * 109.46959 * 185.15175 * 5 3 2 27 27 H 1.09001 * 109.88642 * 117.34198 * 7 6 3 28 28 H 1.08993 * 109.89220 * 356.15624 * 7 6 3 29 29 H 1.08991 * 110.70573 * 96.10301 * 8 7 6 30 30 H 1.08999 * 110.69998 * 219.16502 * 8 7 6 31 31 H 0.96998 * 120.00245 * 180.02562 * 14 13 11 32 32 H 1.08994 * 110.37293 * 265.19339 * 19 6 3 33 33 H 1.09001 * 110.37533 * 27.41625 * 19 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.4819 -1.3599 5 6 3.1566 -1.4174 0.2634 6 7 3.1353 0.9007 1.0528 7 6 2.6047 0.5089 2.3715 8 6 1.8654 1.7342 2.9492 9 6 2.5020 2.9244 2.1843 10 1 3.4448 3.2234 2.6423 11 6 1.5484 4.0888 2.1075 12 1 0.8049 4.1272 1.3251 13 6 1.6252 5.1051 3.0360 14 7 0.8599 6.1676 2.9128 15 14 2.8161 4.9729 4.4691 16 1 4.0843 5.6646 4.1242 17 1 2.2172 5.6075 5.6706 18 1 3.0938 3.5418 4.7516 19 6 2.7377 2.2986 0.7818 20 1 -1.0500 0.0002 0.0002 21 1 4.2459 0.4819 -1.3601 22 1 2.7928 -0.1860 -2.1411 23 1 2.7921 1.4921 -1.5476 24 1 2.7200 -1.7948 1.1881 25 1 2.8708 -2.0662 -0.5646 26 1 4.2427 -1.4014 0.3544 27 1 3.4243 0.2253 3.0317 28 1 1.9107 -0.3240 2.2595 29 1 0.7968 1.6716 2.7440 30 1 2.0462 1.8236 4.0204 31 1 0.9142 6.8828 3.5659 32 1 3.5367 2.8261 0.2608 33 1 1.8203 2.3251 0.1938 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958682872.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:42 Heat of formation + Delta-G solvation = 53.812437 kcal Electronic energy + Delta-G solvation = -13899.875210 eV Core-core repulsion = 11733.944635 eV Total energy + Delta-G solvation = -2165.930575 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.19417 -34.99138 -32.39591 -31.30213 -29.20484 -28.72333 -26.66259 -24.24264 -22.13788 -20.37896 -19.37522 -17.43694 -16.83398 -15.57473 -15.02595 -14.30041 -13.96766 -13.53934 -12.96677 -12.52560 -12.20321 -12.02910 -11.99226 -11.79919 -11.40487 -11.08121 -11.02093 -10.77279 -10.34807 -10.11401 -9.97049 -9.83266 -9.68966 -9.52323 -9.06466 -8.50778 -7.90570 -6.08057 -4.06163 3.13622 3.15532 3.29586 3.38344 3.42590 4.41211 4.43523 4.69519 5.14492 5.23659 5.27190 5.57301 5.76767 5.82278 5.84801 5.94654 5.98890 6.13058 6.17171 6.28968 6.32264 6.42074 6.45293 6.65932 6.81679 6.90136 7.16182 7.39191 7.48982 7.65847 7.81273 7.93872 8.53852 8.96629 9.55512 11.05003 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.044916 B = 0.009698 C = 0.009227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.241796 B = 2886.354672 C = 3033.689903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.196 4.196 3 C 0.206 3.794 4 C -0.136 4.136 5 C -0.132 4.132 6 N -0.516 5.516 7 C 0.040 3.960 8 C -0.142 4.142 9 C 0.016 3.984 10 H 0.042 0.958 11 C -0.505 4.505 12 H 0.071 0.929 13 C 0.071 3.929 14 N -0.900 5.900 15 Si 0.877 3.123 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.260 1.260 19 C 0.051 3.949 20 H 0.212 0.788 21 H 0.070 0.930 22 H 0.057 0.943 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.263 0.737 32 H 0.067 0.933 33 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.765 -12.749 -4.235 13.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.198 4.198 3 C 0.116 3.884 4 C -0.193 4.193 5 C -0.190 4.190 6 N -0.239 5.239 7 C -0.088 4.088 8 C -0.181 4.181 9 C -0.004 4.004 10 H 0.060 0.940 11 C -0.543 4.543 12 H 0.089 0.911 13 C -0.131 4.131 14 N -0.538 5.538 15 Si 0.704 3.296 16 H -0.204 1.204 17 H -0.216 1.216 18 H -0.185 1.185 19 C -0.076 4.076 20 H 0.229 0.771 21 H 0.089 0.911 22 H 0.076 0.924 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.301 -12.608 -4.150 13.953 hybrid contribution -0.697 0.150 0.856 1.114 sum 3.605 -12.458 -3.294 13.381 Atomic orbital electron populations 1.24915 0.95921 1.00857 1.00769 1.24156 0.95348 1.00119 1.00175 1.18493 0.81684 0.94425 0.93829 1.21854 1.01747 1.01746 0.93971 1.21843 1.01869 0.93763 1.01517 1.64070 1.55547 1.03261 1.00983 1.22822 0.97391 0.98063 0.90496 1.23108 0.99790 0.95428 0.99748 1.20276 0.96181 0.93298 0.90665 0.94020 1.20893 1.16679 1.02671 1.14092 0.91062 1.25053 0.95583 0.94767 0.97702 1.69917 1.40120 1.07646 1.36138 0.86853 0.81368 0.78912 0.82432 1.20386 1.21552 1.18485 1.23199 0.98489 0.85929 0.99984 0.77115 0.91122 0.92447 0.91809 0.92513 0.92389 0.91054 0.91665 0.93539 0.92093 0.92608 0.92691 0.91416 0.93482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.29 19.25 29.55 0.57 -2.72 16 2 C -0.20 -3.32 8.87 -37.12 -0.33 -3.65 16 3 C 0.21 3.24 0.64 -134.39 -0.09 3.16 16 4 C -0.14 -1.89 8.25 37.16 0.31 -1.59 16 5 C -0.13 -1.71 8.27 37.16 0.31 -1.41 16 6 N -0.52 -9.45 5.00 -218.56 -1.09 -10.54 16 7 C 0.04 0.73 5.70 -2.83 -0.02 0.72 16 8 C -0.14 -3.08 6.24 -24.90 -0.16 -3.23 16 9 C 0.02 0.37 2.35 -89.38 -0.21 0.16 16 10 H 0.04 1.02 5.93 -51.93 -0.31 0.71 16 11 C -0.51 -14.27 8.97 -34.44 -0.31 -14.58 16 12 H 0.07 2.20 8.02 -52.49 -0.42 1.78 16 13 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 14 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 15 Si 0.88 21.66 27.00 -169.99 -4.59 17.08 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.26 -6.14 5.84 56.52 0.33 -5.81 16 19 C 0.05 1.07 4.59 -2.04 -0.01 1.06 16 20 H 0.21 2.66 7.80 -54.09 -0.42 2.24 16 21 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.06 0.97 6.85 -51.93 -0.36 0.61 16 24 H 0.06 0.74 6.83 -51.93 -0.35 0.39 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.05 0.81 5.67 -51.93 -0.29 0.52 16 29 H 0.06 1.38 8.03 -51.93 -0.42 0.96 16 30 H 0.06 1.20 7.18 -51.93 -0.37 0.83 16 31 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.05 1.05 6.27 -51.93 -0.33 0.72 16 LS Contribution 264.35 15.07 3.98 3.98 Total: -1.00 -30.34 264.35 -5.97 -36.31 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -5.01 Total: 0.15 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: -0.03 Total: -20.13 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: -0.32 Total: -37.39 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.59 Total: 17.08 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.34 -5.97 -36.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958682872.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.121 kcal (2) G-P(sol) polarization free energy of solvation -30.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds