Wall clock time and date at job start Mon Mar 30 2020 02:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47251 * 109.47804 * 3 2 1 5 5 C 1.53005 * 109.46963 * 349.47768 * 3 2 1 6 6 N 1.46901 * 109.47480 * 229.48112 * 3 2 1 7 7 C 1.47446 * 110.99710 * 56.99240 * 6 3 2 8 8 C 1.54325 * 107.23219 * 236.74476 * 7 6 3 9 9 C 1.55141 * 103.17551 * 337.63007 * 8 7 6 10 10 H 1.08995 * 110.99458 * 277.64831 * 9 8 7 11 11 C 1.50702 * 110.98942 * 153.83005 * 9 8 7 12 12 H 1.07998 * 120.00164 * 275.47977 * 11 9 8 13 13 C 1.37875 * 120.00114 * 95.48079 * 11 9 8 14 14 N 1.31514 * 120.00509 * 175.02524 * 13 11 9 15 15 Si 1.86808 * 119.99677 * 355.01791 * 13 11 9 16 16 H 1.48510 * 109.46691 * 94.76663 * 15 13 11 17 17 H 1.48493 * 109.47412 * 214.76159 * 15 13 11 18 18 H 1.48496 * 109.47244 * 334.76800 * 15 13 11 19 19 C 1.47845 * 110.99792 * 296.15409 * 6 3 2 20 20 H 4.44644 * 5.63377 * 180.02562 * 4 1 2 21 21 H 1.09008 * 109.47304 * 180.02562 * 4 3 2 22 22 H 1.08998 * 109.47083 * 299.99689 * 4 3 2 23 23 H 1.08997 * 109.47409 * 60.00247 * 4 3 2 24 24 H 1.08999 * 109.47122 * 305.15027 * 5 3 2 25 25 H 1.09006 * 109.47132 * 65.15329 * 5 3 2 26 26 H 1.09003 * 109.46959 * 185.15175 * 5 3 2 27 27 H 1.09001 * 109.88642 * 117.34198 * 7 6 3 28 28 H 1.08993 * 109.89220 * 356.15624 * 7 6 3 29 29 H 1.08991 * 110.70573 * 96.10301 * 8 7 6 30 30 H 1.08999 * 110.69998 * 219.16502 * 8 7 6 31 31 H 0.96998 * 120.00245 * 180.02562 * 14 13 11 32 32 H 1.08994 * 110.37293 * 265.19339 * 19 6 3 33 33 H 1.09001 * 110.37533 * 27.41625 * 19 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.4819 -1.3599 5 6 3.1566 -1.4174 0.2634 6 7 3.1353 0.9007 1.0528 7 6 2.6047 0.5089 2.3715 8 6 1.8654 1.7342 2.9492 9 6 2.5020 2.9244 2.1843 10 1 3.4448 3.2234 2.6423 11 6 1.5484 4.0888 2.1075 12 1 0.8049 4.1272 1.3251 13 6 1.6252 5.1051 3.0360 14 7 0.8599 6.1676 2.9128 15 14 2.8161 4.9729 4.4691 16 1 4.0843 5.6646 4.1242 17 1 2.2172 5.6075 5.6706 18 1 3.0938 3.5418 4.7516 19 6 2.7377 2.2986 0.7818 20 1 -1.0500 0.0002 0.0002 21 1 4.2459 0.4819 -1.3601 22 1 2.7928 -0.1860 -2.1411 23 1 2.7921 1.4921 -1.5476 24 1 2.7200 -1.7948 1.1881 25 1 2.8708 -2.0662 -0.5646 26 1 4.2427 -1.4014 0.3544 27 1 3.4243 0.2253 3.0317 28 1 1.9107 -0.3240 2.2595 29 1 0.7968 1.6716 2.7440 30 1 2.0462 1.8236 4.0204 31 1 0.9142 6.8828 3.5659 32 1 3.5367 2.8261 0.2608 33 1 1.8203 2.3251 0.1938 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958682872.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:42 Heat of formation + Delta-G solvation = 33.748819 kcal Electronic energy + Delta-G solvation = -13900.745234 eV Core-core repulsion = 11733.944635 eV Total energy + Delta-G solvation = -2166.800599 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.64716 -36.55505 -34.44553 -32.61319 -30.91074 -30.17197 -27.95145 -26.13566 -23.46828 -21.85204 -21.24659 -19.29894 -18.38898 -17.02532 -16.56413 -16.07020 -15.52774 -14.87673 -14.75553 -14.33545 -13.69679 -13.46923 -13.28708 -12.96568 -12.91582 -12.72171 -12.55327 -12.16801 -12.03634 -11.72626 -11.70613 -11.48731 -11.29045 -11.15302 -10.98916 -10.68463 -9.40815 -8.31173 -6.34414 1.35055 1.36763 1.49730 1.84675 1.89290 2.34899 3.02531 3.07245 3.47354 3.93474 4.02912 4.14734 4.30420 4.41685 4.51729 4.73501 4.76492 4.83280 4.88428 4.92915 4.93358 5.06171 5.08364 5.16751 5.28054 5.35708 5.43769 5.51617 5.62916 6.01194 6.22018 6.31563 6.68477 6.70362 7.30476 8.85713 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.044916 B = 0.009698 C = 0.009227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.241796 B = 2886.354672 C = 3033.689903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.224 4.224 3 C 0.196 3.804 4 C -0.133 4.133 5 C -0.126 4.126 6 N -0.510 5.510 7 C 0.047 3.953 8 C -0.138 4.138 9 C 0.007 3.993 10 H 0.044 0.956 11 C -0.510 4.510 12 H 0.025 0.975 13 C 0.011 3.989 14 N -0.950 5.950 15 Si 0.945 3.055 16 H -0.269 1.269 17 H -0.287 1.287 18 H -0.239 1.239 19 C 0.063 3.937 20 H 0.235 0.765 21 H 0.084 0.916 22 H 0.077 0.923 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.058 0.942 29 H 0.040 0.960 30 H 0.060 0.940 31 H 0.266 0.734 32 H 0.071 0.929 33 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.475 -14.892 -3.666 16.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.226 4.226 3 C 0.107 3.893 4 C -0.191 4.191 5 C -0.183 4.183 6 N -0.233 5.233 7 C -0.080 4.080 8 C -0.177 4.177 9 C -0.012 4.012 10 H 0.063 0.937 11 C -0.548 4.548 12 H 0.043 0.957 13 C -0.186 4.186 14 N -0.590 5.590 15 Si 0.769 3.231 16 H -0.194 1.194 17 H -0.213 1.213 18 H -0.162 1.162 19 C -0.064 4.064 20 H 0.251 0.749 21 H 0.103 0.897 22 H 0.095 0.905 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 6.015 -14.783 -3.597 16.360 hybrid contribution -1.338 0.819 0.569 1.669 sum 4.677 -13.964 -3.028 15.034 Atomic orbital electron populations 1.25675 0.96968 1.00270 1.00009 1.24642 0.96258 1.00750 1.00922 1.18807 0.81279 0.95547 0.93700 1.21860 1.02601 1.00924 0.93698 1.21819 1.02493 0.91790 1.02235 1.64104 1.55413 1.01991 1.01788 1.22808 0.97954 0.96614 0.90626 1.22968 0.98866 0.96004 0.99850 1.20251 0.95146 0.92726 0.93091 0.93739 1.21092 1.16430 1.04559 1.12689 0.95693 1.25976 0.97691 0.94198 1.00783 1.70067 1.42482 1.08822 1.37636 0.85764 0.78882 0.80133 0.78344 1.19412 1.21316 1.16184 1.22928 0.97717 0.87904 0.97899 0.74857 0.89700 0.90452 0.93928 0.92688 0.90481 0.89830 0.89519 0.92397 0.94075 0.92139 0.92500 0.91078 0.95568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.52 19.25 74.32 1.43 -5.09 16 2 C -0.22 -7.29 8.87 31.12 0.28 -7.01 16 3 C 0.20 5.74 0.64 1.72 0.00 5.74 16 4 C -0.13 -3.45 8.25 71.98 0.59 -2.86 16 5 C -0.13 -2.81 8.27 71.98 0.60 -2.22 16 6 N -0.51 -17.59 5.00 -845.40 -4.22 -21.82 16 7 C 0.05 1.62 5.70 86.65 0.49 2.12 16 8 C -0.14 -5.81 6.24 31.78 0.20 -5.61 16 9 C 0.01 0.35 2.35 -9.99 -0.02 0.33 16 10 H 0.04 2.09 5.93 -2.39 -0.01 2.07 16 11 C -0.51 -29.61 8.97 25.60 0.23 -29.38 16 12 H 0.02 1.62 8.02 -2.91 -0.02 1.60 16 13 C 0.01 0.62 5.47 84.65 0.46 1.08 16 14 N -0.95 -60.03 13.96 21.45 0.30 -59.73 16 15 Si 0.95 44.39 27.00 68.60 1.85 46.24 16 16 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 17 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 18 H -0.24 -10.27 5.84 99.48 0.58 -9.69 16 19 C 0.06 2.64 4.59 86.94 0.40 3.03 16 20 H 0.23 5.62 7.80 -4.42 -0.03 5.59 16 21 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 22 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.04 1.26 6.85 -2.39 -0.02 1.25 16 24 H 0.05 1.25 6.83 -2.39 -0.02 1.23 16 25 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.06 1.86 5.67 -2.39 -0.01 1.85 16 29 H 0.04 1.86 8.03 -2.39 -0.02 1.84 16 30 H 0.06 2.46 7.18 -2.39 -0.02 2.44 16 31 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 32 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.03 1.19 6.27 -2.39 -0.01 1.18 16 Total: -1.00 -66.41 264.35 3.52 -62.88 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.94 Total: 12.29 kcal Atomic # 6 Polarization: -44.52 SS G_CDS: 4.66 Total: -39.87 kcal Atomic # 7 Polarization: -77.62 SS G_CDS: -3.93 Total: -81.55 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.85 Total: 46.24 kcal Total: -66.41 3.52 -62.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958682872.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.634 kcal (2) G-P(sol) polarization free energy of solvation -66.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds