Wall clock time and date at job start Mon Mar 30 2020 02:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46998 * 224.06452 * 3 2 1 5 5 C 1.53001 * 109.47177 * 104.06606 * 3 2 1 6 6 N 1.46901 * 109.47394 * 344.06358 * 3 2 1 7 7 C 1.47437 * 111.00223 * 299.15847 * 6 3 2 8 8 C 1.54320 * 107.23257 * 123.25511 * 7 6 3 9 9 C 1.55138 * 103.02210 * 22.28526 * 8 7 6 10 10 H 1.09001 * 110.98913 * 82.43214 * 9 8 7 11 11 C 1.50694 * 110.99424 * 206.25776 * 9 8 7 12 12 H 1.07999 * 120.00496 * 112.26814 * 11 9 8 13 13 C 1.37883 * 119.99671 * 292.26287 * 11 9 8 14 14 N 1.31510 * 120.00041 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 119.99708 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47370 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46764 * 120.00280 * 15 13 11 18 18 H 1.48507 * 109.46692 * 239.99995 * 15 13 11 19 19 C 1.47846 * 110.99547 * 60.00250 * 6 3 2 20 20 H 4.44651 * 5.63415 * 179.97438 * 4 1 2 21 21 H 1.08996 * 109.46906 * 179.97438 * 4 3 2 22 22 H 1.09003 * 109.47214 * 300.00389 * 4 3 2 23 23 H 1.09001 * 109.46967 * 60.00031 * 4 3 2 24 24 H 1.08995 * 109.46995 * 299.99795 * 5 3 2 25 25 H 1.09003 * 109.46857 * 59.99720 * 5 3 2 26 26 H 1.08999 * 109.47224 * 179.97438 * 5 3 2 27 27 H 1.08998 * 109.89349 * 242.66131 * 7 6 3 28 28 H 1.08999 * 109.89127 * 3.85194 * 7 6 3 29 29 H 1.09000 * 110.70582 * 140.66816 * 8 7 6 30 30 H 1.08999 * 110.70796 * 263.73072 * 8 7 6 31 31 H 0.96997 * 120.00212 * 179.97438 * 14 13 11 32 32 H 1.08995 * 110.38030 * 332.46412 * 19 6 3 33 33 H 1.09000 * 110.37255 * 94.81067 * 19 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1555 1.0374 1.0033 5 6 3.1558 0.3515 -1.3992 6 7 3.1363 -1.3309 0.3803 7 6 2.6803 -1.6951 1.7342 8 6 1.9093 -3.0265 1.6143 9 6 2.4578 -3.6304 0.2947 10 1 3.4040 -4.1442 0.4642 11 6 1.4490 -4.5552 -0.3360 12 1 0.9798 -4.2859 -1.2708 13 6 1.1250 -5.7454 0.2802 14 7 1.6968 -6.0736 1.4181 15 14 -0.1250 -6.8922 -0.5020 16 1 -0.6167 -6.2972 -1.7706 17 1 0.5146 -8.2021 -0.7854 18 1 -1.2659 -7.0891 0.4280 19 6 2.6627 -2.3607 -0.5689 20 1 -1.0502 -0.0001 -0.0003 21 1 4.2454 1.0376 1.0036 22 1 2.7916 2.0255 0.7211 23 1 2.7922 0.7875 2.0001 24 1 2.7928 -0.3871 -2.1139 25 1 2.7920 1.3395 -1.6814 26 1 4.2458 0.3524 -1.3991 27 1 3.5392 -1.8220 2.3932 28 1 2.0219 -0.9193 2.1250 29 1 2.1327 -3.6786 2.4587 30 1 0.8369 -2.8457 1.5420 31 1 1.4686 -6.9107 1.8519 32 1 1.7202 -2.0542 -1.0225 33 1 3.4137 -2.5421 -1.3379 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958682873.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:43 Heat of formation + Delta-G solvation = 51.875097 kcal Electronic energy + Delta-G solvation = -13897.941601 eV Core-core repulsion = 11731.927016 eV Total energy + Delta-G solvation = -2166.014585 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.04323 -34.85539 -32.35333 -31.17036 -28.85191 -28.39516 -26.54706 -24.26497 -22.08082 -20.17411 -19.46334 -17.27280 -16.32701 -15.29208 -14.88910 -14.52304 -13.95481 -13.36762 -12.69071 -12.52245 -12.02462 -11.86182 -11.75368 -11.61509 -11.21288 -11.00988 -10.87774 -10.69005 -10.46910 -10.20284 -9.96699 -9.76645 -9.53129 -9.18630 -8.80781 -8.37307 -7.74625 -6.00809 -4.03247 3.21967 3.22645 3.29601 3.37605 3.41717 4.42135 4.53380 4.81209 5.28139 5.30901 5.34318 5.76403 5.83495 5.94023 5.97002 6.00649 6.16550 6.23747 6.33231 6.40644 6.47216 6.59995 6.61460 6.88472 7.16882 7.21192 7.63805 7.69138 7.76222 7.89463 8.01190 8.04106 8.45601 8.99274 9.60565 11.09384 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.045712 B = 0.009185 C = 0.008768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.388777 B = 3047.657426 C = 3192.538746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.192 4.192 3 C 0.205 3.795 4 C -0.134 4.134 5 C -0.133 4.133 6 N -0.514 5.514 7 C 0.037 3.963 8 C -0.118 4.118 9 C 0.049 3.951 10 H 0.040 0.960 11 C -0.510 4.510 12 H 0.055 0.945 13 C 0.063 3.937 14 N -0.888 5.888 15 Si 0.889 3.111 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.285 1.285 19 C 0.044 3.956 20 H 0.211 0.789 21 H 0.069 0.931 22 H 0.056 0.944 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.041 0.959 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.259 0.741 32 H 0.042 0.958 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.003 11.316 -1.426 11.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.194 4.194 3 C 0.114 3.886 4 C -0.192 4.192 5 C -0.190 4.190 6 N -0.237 5.237 7 C -0.091 4.091 8 C -0.156 4.156 9 C 0.030 3.970 10 H 0.058 0.942 11 C -0.549 4.549 12 H 0.073 0.927 13 C -0.138 4.138 14 N -0.527 5.527 15 Si 0.717 3.283 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.083 4.083 20 H 0.228 0.772 21 H 0.088 0.912 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.600 11.197 -1.300 11.386 hybrid contribution -1.942 -0.772 -0.272 2.107 sum -0.342 10.426 -1.571 10.549 Atomic orbital electron populations 1.24878 0.95894 1.00698 1.01422 1.24194 0.95381 1.00126 0.99718 1.18507 0.81632 0.92151 0.96272 1.21873 1.01751 0.96965 0.98565 1.21813 1.01679 1.00959 0.94575 1.64048 1.55768 1.00368 1.03491 1.22913 0.97969 0.98139 0.90049 1.22692 0.97961 0.93232 1.01763 1.19741 0.96786 0.90308 0.90172 0.94195 1.21065 1.23426 1.03151 1.07266 0.92684 1.24967 0.96243 0.97701 0.94931 1.69971 1.42675 1.23383 1.16650 0.86582 0.81392 0.80903 0.79411 1.19807 1.20981 1.21107 1.23220 0.97268 0.92512 0.95256 0.77220 0.91153 0.92534 0.92246 0.92068 0.92594 0.91177 0.91773 0.94017 0.91355 0.93499 0.93121 0.93985 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.51 19.25 29.55 0.57 -2.94 16 2 C -0.19 -3.41 8.89 -37.12 -0.33 -3.74 16 3 C 0.20 3.39 0.64 -134.39 -0.09 3.30 16 4 C -0.13 -1.85 8.29 37.16 0.31 -1.54 16 5 C -0.13 -1.91 8.33 37.16 0.31 -1.60 16 6 N -0.51 -9.99 5.00 -218.88 -1.09 -11.08 16 7 C 0.04 0.74 5.64 -2.84 -0.02 0.72 16 8 C -0.12 -2.83 5.89 -24.91 -0.15 -2.97 16 9 C 0.05 1.26 2.84 -89.63 -0.25 1.00 16 10 H 0.04 1.12 8.14 -51.93 -0.42 0.69 16 11 C -0.51 -14.27 8.50 -34.44 -0.29 -14.56 16 12 H 0.05 1.53 7.77 -52.49 -0.41 1.12 16 13 C 0.06 1.78 5.37 -17.82 -0.10 1.69 16 14 N -0.89 -25.85 12.60 55.43 0.70 -25.15 16 15 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 19 C 0.04 0.97 4.60 -2.29 -0.01 0.96 16 20 H 0.21 2.77 7.80 -54.08 -0.42 2.35 16 21 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.85 6.45 -51.93 -0.33 0.51 16 24 H 0.06 0.95 7.08 -51.93 -0.37 0.58 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.04 0.79 5.59 -51.93 -0.29 0.50 16 29 H 0.07 1.75 7.83 -51.93 -0.41 1.34 16 30 H 0.05 1.18 8.04 -51.93 -0.42 0.76 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.04 0.96 6.30 -51.93 -0.33 0.63 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 268.87 15.07 4.05 4.05 Total: -1.00 -29.36 268.87 -6.48 -35.84 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -5.07 Total: -0.49 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -0.05 Total: -19.69 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: -0.39 Total: -36.23 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.36 -6.48 -35.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958682873.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.711 kcal (2) G-P(sol) polarization free energy of solvation -29.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds