Wall clock time and date at job start Mon Mar 30 2020 02:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46998 * 224.06452 * 3 2 1 5 5 C 1.53001 * 109.47177 * 104.06606 * 3 2 1 6 6 N 1.46901 * 109.47394 * 344.06358 * 3 2 1 7 7 C 1.47437 * 111.00223 * 299.15847 * 6 3 2 8 8 C 1.54320 * 107.23257 * 123.25511 * 7 6 3 9 9 C 1.55138 * 103.02210 * 22.28526 * 8 7 6 10 10 H 1.09001 * 110.98913 * 82.43214 * 9 8 7 11 11 C 1.50694 * 110.99424 * 206.25776 * 9 8 7 12 12 H 1.07999 * 120.00496 * 112.26814 * 11 9 8 13 13 C 1.37883 * 119.99671 * 292.26287 * 11 9 8 14 14 N 1.31510 * 120.00041 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 119.99708 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47370 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46764 * 120.00280 * 15 13 11 18 18 H 1.48507 * 109.46692 * 239.99995 * 15 13 11 19 19 C 1.47846 * 110.99547 * 60.00250 * 6 3 2 20 20 H 4.44651 * 5.63415 * 179.97438 * 4 1 2 21 21 H 1.08996 * 109.46906 * 179.97438 * 4 3 2 22 22 H 1.09003 * 109.47214 * 300.00389 * 4 3 2 23 23 H 1.09001 * 109.46967 * 60.00031 * 4 3 2 24 24 H 1.08995 * 109.46995 * 299.99795 * 5 3 2 25 25 H 1.09003 * 109.46857 * 59.99720 * 5 3 2 26 26 H 1.08999 * 109.47224 * 179.97438 * 5 3 2 27 27 H 1.08998 * 109.89349 * 242.66131 * 7 6 3 28 28 H 1.08999 * 109.89127 * 3.85194 * 7 6 3 29 29 H 1.09000 * 110.70582 * 140.66816 * 8 7 6 30 30 H 1.08999 * 110.70796 * 263.73072 * 8 7 6 31 31 H 0.96997 * 120.00212 * 179.97438 * 14 13 11 32 32 H 1.08995 * 110.38030 * 332.46412 * 19 6 3 33 33 H 1.09000 * 110.37255 * 94.81067 * 19 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1555 1.0374 1.0033 5 6 3.1558 0.3515 -1.3992 6 7 3.1363 -1.3309 0.3803 7 6 2.6803 -1.6951 1.7342 8 6 1.9093 -3.0265 1.6143 9 6 2.4578 -3.6304 0.2947 10 1 3.4040 -4.1442 0.4642 11 6 1.4490 -4.5552 -0.3360 12 1 0.9798 -4.2859 -1.2708 13 6 1.1250 -5.7454 0.2802 14 7 1.6968 -6.0736 1.4181 15 14 -0.1250 -6.8922 -0.5020 16 1 -0.6167 -6.2972 -1.7706 17 1 0.5146 -8.2021 -0.7854 18 1 -1.2659 -7.0891 0.4280 19 6 2.6627 -2.3607 -0.5689 20 1 -1.0502 -0.0001 -0.0003 21 1 4.2454 1.0376 1.0036 22 1 2.7916 2.0255 0.7211 23 1 2.7922 0.7875 2.0001 24 1 2.7928 -0.3871 -2.1139 25 1 2.7920 1.3395 -1.6814 26 1 4.2458 0.3524 -1.3991 27 1 3.5392 -1.8220 2.3932 28 1 2.0219 -0.9193 2.1250 29 1 2.1327 -3.6786 2.4587 30 1 0.8369 -2.8457 1.5420 31 1 1.4686 -6.9107 1.8519 32 1 1.7202 -2.0542 -1.0225 33 1 3.4137 -2.5421 -1.3379 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958682873.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:43 Heat of formation + Delta-G solvation = 33.727795 kcal Electronic energy + Delta-G solvation = -13898.728527 eV Core-core repulsion = 11731.927016 eV Total energy + Delta-G solvation = -2166.801511 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.59070 -36.52148 -34.31675 -32.51923 -30.57738 -30.02938 -27.91402 -26.22391 -23.46954 -21.77102 -21.41996 -18.90301 -18.09542 -16.89638 -16.53702 -16.35640 -15.45310 -14.78471 -14.49315 -14.23797 -13.53150 -13.25875 -13.11984 -13.03083 -12.93502 -12.76785 -12.58026 -12.34645 -12.12016 -11.87514 -11.54597 -11.39436 -11.10687 -11.00763 -10.88810 -10.51408 -9.35284 -8.16407 -6.26275 1.37549 1.39085 1.50823 1.88713 1.91993 2.40146 3.10619 3.15809 3.51444 4.00472 4.11159 4.16299 4.40532 4.48216 4.63829 4.76604 4.80826 4.84827 4.92390 4.95098 5.01627 5.12950 5.20304 5.25431 5.34459 5.39834 5.55844 5.75910 5.88761 6.02497 6.28270 6.35105 6.71677 6.82819 7.41146 8.93601 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.045712 B = 0.009185 C = 0.008768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.388777 B = 3047.657426 C = 3192.538746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.224 4.224 3 C 0.195 3.805 4 C -0.129 4.129 5 C -0.129 4.129 6 N -0.512 5.512 7 C 0.049 3.951 8 C -0.108 4.108 9 C 0.039 3.961 10 H 0.008 0.992 11 C -0.529 4.529 12 H 0.050 0.950 13 C 0.014 3.986 14 N -0.918 5.918 15 Si 0.955 3.045 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.280 1.280 19 C 0.062 3.938 20 H 0.237 0.763 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.052 0.948 24 H 0.044 0.956 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.028 0.972 31 H 0.261 0.739 32 H 0.033 0.967 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.633 12.593 -1.962 12.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.226 4.226 3 C 0.105 3.895 4 C -0.186 4.186 5 C -0.187 4.187 6 N -0.234 5.234 7 C -0.079 4.079 8 C -0.147 4.147 9 C 0.020 3.980 10 H 0.026 0.974 11 C -0.568 4.568 12 H 0.069 0.931 13 C -0.185 4.185 14 N -0.557 5.557 15 Si 0.780 3.220 16 H -0.191 1.191 17 H -0.203 1.203 18 H -0.206 1.206 19 C -0.066 4.066 20 H 0.253 0.747 21 H 0.101 0.899 22 H 0.096 0.904 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.097 0.903 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.234 12.493 -1.842 12.688 hybrid contribution -1.837 -1.148 -0.105 2.168 sum -0.602 11.345 -1.947 11.527 Atomic orbital electron populations 1.25667 0.96923 0.99574 1.00624 1.24621 0.96236 1.01156 1.00588 1.18815 0.81454 0.90876 0.98321 1.21858 1.02486 0.97000 0.97278 1.21813 1.02430 1.01662 0.92776 1.64051 1.55747 1.01286 1.02363 1.22788 0.98020 0.96124 0.90964 1.22469 0.97234 0.95001 1.00005 1.19692 0.94838 0.91589 0.91868 0.97375 1.21363 1.24002 1.04116 1.07304 0.93124 1.25760 0.98100 0.99257 0.95402 1.70088 1.43916 1.23907 1.17812 0.85551 0.78938 0.78802 0.78666 1.19142 1.20343 1.20599 1.22917 0.97040 0.91511 0.95111 0.74689 0.89950 0.90377 0.92874 0.93661 0.90332 0.89958 0.90749 0.92592 0.93743 0.95280 0.92970 0.94897 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.60 19.25 74.32 1.43 -5.17 16 2 C -0.22 -7.56 8.89 31.13 0.28 -7.28 16 3 C 0.20 6.05 0.64 1.72 0.00 6.05 16 4 C -0.13 -3.17 8.29 71.98 0.60 -2.58 16 5 C -0.13 -3.42 8.33 71.98 0.60 -2.82 16 6 N -0.51 -19.32 5.00 -846.39 -4.23 -23.55 16 7 C 0.05 1.92 5.64 86.65 0.49 2.41 16 8 C -0.11 -5.30 5.89 31.78 0.19 -5.11 16 9 C 0.04 2.06 2.84 -10.15 -0.03 2.03 16 10 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 11 C -0.53 -30.09 8.50 25.60 0.22 -29.87 16 12 H 0.05 2.85 7.77 -2.91 -0.02 2.83 16 13 C 0.01 0.79 5.37 84.66 0.45 1.24 16 14 N -0.92 -54.42 12.60 21.45 0.27 -54.15 16 15 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 16 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 19 C 0.06 2.70 4.60 86.78 0.40 3.10 16 20 H 0.24 5.68 7.80 -4.41 -0.03 5.65 16 21 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 22 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 23 H 0.05 1.37 6.45 -2.39 -0.02 1.35 16 24 H 0.04 1.32 7.08 -2.39 -0.02 1.31 16 25 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 28 H 0.06 2.05 5.59 -2.39 -0.01 2.04 16 29 H 0.04 2.34 7.83 -2.39 -0.02 2.32 16 30 H 0.03 1.48 8.04 -2.39 -0.02 1.46 16 31 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 32 H 0.03 1.50 6.30 -2.39 -0.02 1.48 16 33 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -62.96 268.87 3.75 -59.21 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 1.06 Total: 10.06 kcal Atomic # 6 Polarization: -42.63 SS G_CDS: 4.62 Total: -38.01 kcal Atomic # 7 Polarization: -73.74 SS G_CDS: -3.96 Total: -77.70 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -62.96 3.75 -59.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958682873.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.942 kcal (2) G-P(sol) polarization free energy of solvation -62.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds