Wall clock time and date at job start Mon Mar 30 2020 02:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.46932 * 2 1 4 4 N 1.39928 * 125.74857 * 269.97479 * 3 2 1 5 5 C 1.30428 * 108.97950 * 180.02562 * 4 3 2 6 6 C 1.41292 * 108.05372 * 359.97438 * 5 4 3 7 7 C 1.47504 * 126.44439 * 179.97438 * 6 5 4 8 8 O 1.21807 * 120.00142 * 180.02562 * 7 6 5 9 9 C 1.46152 * 119.99596 * 0.02562 * 7 6 5 10 10 H 1.07998 * 120.00061 * 0.02562 * 9 7 6 11 11 C 1.40260 * 119.99686 * 180.02562 * 9 7 6 12 12 N 1.30570 * 120.00181 * 359.97438 * 11 9 7 13 13 Si 1.86804 * 119.99984 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47196 * 59.99898 * 13 11 9 15 15 H 1.48496 * 109.47013 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.46903 * 300.00036 * 13 11 9 17 17 C 1.34323 * 125.75159 * 90.00311 * 3 2 1 18 18 C 1.50698 * 126.32270 * 0.23506 * 17 3 2 19 19 H 1.09000 * 109.47523 * 299.99761 * 1 2 3 20 20 H 1.09004 * 109.47540 * 60.00457 * 1 2 3 21 21 H 1.09005 * 109.47019 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.46898 * 239.99877 * 2 1 3 23 23 H 1.08998 * 109.46886 * 120.00133 * 2 1 3 24 24 H 1.08003 * 125.97294 * 180.02562 * 5 4 3 25 25 H 0.97003 * 119.99787 * 179.97438 * 12 11 9 26 26 H 1.08998 * 109.47870 * 269.72013 * 18 17 3 27 27 H 1.09007 * 109.47155 * 29.72122 * 18 17 3 28 28 H 1.08996 * 109.47280 * 149.71401 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2912 2.1518 -1.1356 5 6 2.7078 3.3291 -0.7593 6 6 2.7176 3.3592 0.6532 7 6 3.1201 4.4960 1.5026 8 8 3.0832 4.3928 2.7158 9 6 3.5631 5.7460 0.8886 10 1 3.5954 5.8376 -0.1870 11 6 3.9464 6.8268 1.6963 12 7 3.9069 6.7163 2.9967 13 14 4.5120 8.4249 0.9115 14 1 3.4205 8.9760 0.0689 15 1 4.8583 9.4027 1.9741 16 1 5.7062 8.1663 0.0677 17 6 2.2799 2.1211 1.0901 18 6 2.1301 1.6821 2.5239 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5139 0.8900 24 1 2.9944 4.1395 -1.4132 25 1 4.1723 7.4636 3.5552 26 1 1.1256 1.9200 2.8738 27 1 2.2939 0.6067 2.5937 28 1 2.8625 2.2019 3.1415 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020328939.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:44 Heat of formation + Delta-G solvation = 21.489781 kcal Electronic energy + Delta-G solvation = -13313.861653 eV Core-core repulsion = 10945.270457 eV Total energy + Delta-G solvation = -2368.591196 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.44164 -36.14746 -34.10476 -32.57779 -31.23978 -29.17563 -27.11793 -25.72508 -23.47867 -21.46060 -19.74262 -18.27988 -16.63298 -15.66910 -15.02792 -14.75927 -14.29280 -13.55514 -13.13758 -12.82479 -12.67634 -12.35114 -12.10112 -11.91783 -11.50567 -11.45701 -11.16507 -11.09823 -10.87221 -10.43074 -10.29170 -9.78083 -8.85534 -8.62383 -7.46644 -7.35891 -6.16422 -4.66881 2.45347 3.03336 3.12150 3.20959 3.23449 3.34795 4.12753 4.65905 4.77608 5.08898 5.21819 5.35746 5.52650 5.62120 5.68534 5.85594 5.89585 6.08041 6.16062 6.50612 6.57198 6.70937 6.88028 7.39560 7.44104 7.72902 8.19228 8.42415 8.88941 8.98642 10.45083 10.65776 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.057224 B = 0.008454 C = 0.007578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.191172 B = 3311.210999 C = 3694.259765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.130 3.870 3 N -0.377 5.377 4 N -0.327 5.327 5 C 0.078 3.922 6 C -0.255 4.255 7 C 0.428 3.572 8 O -0.539 6.539 9 C -0.523 4.523 10 H 0.070 0.930 11 C 0.082 3.918 12 N -0.755 5.755 13 Si 0.903 3.097 14 H -0.266 1.266 15 H -0.280 1.280 16 H -0.266 1.266 17 C 0.098 3.902 18 C -0.084 4.084 19 H 0.061 0.939 20 H 0.063 0.937 21 H 0.071 0.929 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.184 0.816 25 H 0.271 0.729 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.661 -8.820 -3.949 10.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.009 3.991 3 N -0.161 5.161 4 N -0.148 5.148 5 C -0.108 4.108 6 C -0.267 4.267 7 C 0.321 3.679 8 O -0.427 6.427 9 C -0.556 4.556 10 H 0.089 0.911 11 C -0.139 4.139 12 N -0.385 5.385 13 Si 0.728 3.272 14 H -0.191 1.191 15 H -0.205 1.205 16 H -0.191 1.191 17 C -0.030 4.030 18 C -0.142 4.142 19 H 0.080 0.920 20 H 0.082 0.918 21 H 0.089 0.911 22 H 0.107 0.893 23 H 0.105 0.895 24 H 0.200 0.800 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.976 -9.720 -4.175 11.301 hybrid contribution 0.416 1.294 0.003 1.360 sum -3.561 -8.426 -4.172 10.054 Atomic orbital electron populations 1.22174 0.94863 1.02362 1.03269 1.21485 0.94866 0.79180 1.03610 1.48334 1.52351 1.11566 1.03816 1.76915 1.24670 1.05365 1.07826 1.24023 0.96920 0.94454 0.95375 1.22043 1.12896 0.97416 0.94377 1.18607 0.77729 0.84520 0.87007 1.90425 1.53124 1.83527 1.15642 1.21543 1.42599 0.97328 0.94102 0.91142 1.25909 0.93681 0.99818 0.94480 1.69940 1.33196 1.30865 1.04488 0.86493 0.79871 0.81314 0.79543 1.19114 1.20532 1.19108 1.21695 0.98960 0.92064 0.90244 1.20472 1.04308 0.99658 0.89765 0.92012 0.91771 0.91054 0.89349 0.89521 0.79965 0.91832 0.90982 0.92911 0.87634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 10.24 37.16 0.38 -1.54 15 2 C 0.13 1.71 6.94 -4.04 -0.03 1.68 15 3 N -0.38 -7.06 3.58 -56.50 -0.20 -7.26 15 4 N -0.33 -6.72 12.49 30.86 0.39 -6.34 15 5 C 0.08 1.70 11.47 -16.99 -0.19 1.50 15 6 C -0.26 -6.24 6.12 -104.90 -0.64 -6.88 15 7 C 0.43 12.26 7.09 -32.63 -0.23 12.03 15 8 O -0.54 -16.77 13.55 5.09 0.07 -16.70 15 9 C -0.52 -14.67 9.20 -35.65 -0.33 -15.00 15 10 H 0.07 1.80 6.98 -52.49 -0.37 1.44 15 11 C 0.08 2.24 5.51 -17.33 -0.10 2.14 15 12 N -0.76 -22.03 11.82 55.56 0.66 -21.38 15 13 Si 0.90 19.78 29.56 -169.99 -5.03 14.75 15 14 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 15 H -0.28 -5.98 7.11 56.52 0.40 -5.58 15 16 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 17 C 0.10 2.07 7.02 -81.45 -0.57 1.50 15 18 C -0.08 -1.52 9.57 36.00 0.34 -1.18 15 19 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 20 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 21 H 0.07 0.59 8.14 -51.93 -0.42 0.17 15 22 H 0.09 1.04 8.14 -51.93 -0.42 0.62 15 23 H 0.09 0.95 7.01 -51.93 -0.36 0.59 15 24 H 0.18 3.55 7.40 -52.48 -0.39 3.16 15 25 H 0.27 7.16 8.29 -40.82 -0.34 6.82 15 26 H 0.07 1.24 8.14 -51.93 -0.42 0.82 15 27 H 0.05 0.75 7.05 -51.92 -0.37 0.38 15 28 H 0.11 2.23 6.53 -51.93 -0.34 1.89 15 LS Contribution 249.44 15.07 3.76 3.76 Total: -1.00 -33.67 249.44 -4.79 -38.46 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -3.07 Total: 0.44 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -1.37 Total: -5.74 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.84 Total: -34.97 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.07 Total: -16.70 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -33.67 -4.79 -38.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020328939.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.951 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds