Wall clock time and date at job start Mon Mar 30 2020 02:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32250 * 120.33853 * 2 1 4 4 N 1.28704 * 120.63306 * 180.02562 * 3 2 1 5 5 C 1.33628 * 121.36003 * 0.02562 * 4 3 2 6 6 C 1.41531 * 119.68015 * 179.97438 * 5 4 3 7 7 H 1.08006 * 119.99861 * 180.02562 * 6 5 4 8 8 C 1.40072 * 120.00300 * 0.02562 * 6 5 4 9 9 N 1.30685 * 120.00035 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00120 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47179 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47183 * 120.00300 * 10 8 6 13 13 H 1.48507 * 109.46928 * 240.00110 * 10 8 6 14 14 N 1.33706 * 120.63457 * 0.02562 * 5 4 3 15 15 C 1.32672 * 119.31384 * 359.97438 * 14 5 4 16 16 N 1.38529 * 120.63623 * 180.02562 * 15 14 5 17 17 C 1.46899 * 110.99888 * 296.65051 * 16 15 14 18 18 C 1.46905 * 110.99899 * 60.59683 * 16 15 14 19 19 H 1.08994 * 109.47374 * 95.03618 * 1 2 3 20 20 H 1.08999 * 109.46660 * 215.03094 * 1 2 3 21 21 H 1.08996 * 109.46716 * 335.02853 * 1 2 3 22 22 H 0.97000 * 120.00350 * 179.97438 * 9 8 6 23 23 H 1.08994 * 109.47551 * 63.94697 * 17 16 15 24 24 H 1.08998 * 109.47138 * 183.95357 * 17 16 15 25 25 H 1.09003 * 109.46473 * 303.95059 * 17 16 15 26 26 H 1.09000 * 109.47038 * 55.08098 * 18 16 15 27 27 H 1.09000 * 109.47148 * 175.08398 * 18 16 15 28 28 H 1.09000 * 109.47299 * 295.08493 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1750 1.1414 0.0000 4 7 3.4620 1.1480 -0.0005 5 6 4.1633 0.0105 -0.0015 6 6 5.5778 0.0593 -0.0026 7 1 6.1497 -0.8569 -0.0039 8 6 6.2360 1.2957 -0.0020 9 7 5.5440 2.4043 0.0000 10 14 8.1029 1.3600 -0.0042 11 1 8.6458 -0.0221 -0.0057 12 1 8.5721 2.0781 -1.2164 13 1 8.5749 2.0754 1.2087 14 7 3.5416 -1.1732 -0.0026 15 6 2.2154 -1.2103 -0.0021 16 7 1.5431 -2.4215 -0.0027 17 6 1.8250 -3.1795 -1.2290 18 6 1.8768 -3.2094 1.1915 19 1 -0.3634 -0.0902 -1.0236 20 1 -0.3632 -0.8415 0.5899 21 1 -0.3632 0.9316 0.4338 22 1 5.9998 3.2606 0.0008 23 1 2.8841 -3.4344 -1.2633 24 1 1.2308 -4.0933 -1.2360 25 1 1.5690 -2.5730 -2.0978 26 1 1.6747 -2.6184 2.0848 27 1 1.2707 -4.1151 1.2102 28 1 2.9325 -3.4791 1.1655 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026471914.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:50 Heat of formation + Delta-G solvation = 72.924031 kcal Electronic energy + Delta-G solvation = -13577.153880 eV Core-core repulsion = 11243.085791 eV Total energy + Delta-G solvation = -2334.068089 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.90714 -36.83058 -34.20738 -32.56921 -31.35486 -28.22105 -27.23956 -25.22152 -25.07816 -21.69560 -21.28582 -17.97722 -17.15783 -15.66628 -15.07290 -14.92798 -13.84224 -13.52118 -13.44398 -13.36815 -12.14299 -11.91761 -11.89698 -11.61437 -11.48502 -11.40230 -11.33013 -11.08611 -10.50896 -10.25906 -9.88814 -9.63194 -9.49703 -8.29569 -8.13121 -7.41337 -6.76545 -4.91713 2.24876 2.48847 2.99249 3.02858 3.05541 3.78703 4.25325 4.48300 5.39620 5.51723 5.67149 5.75722 5.76954 5.81615 5.86731 6.08824 6.20325 6.22873 6.33293 6.45172 6.52887 6.91577 7.12488 7.17137 7.22282 7.73523 7.94940 8.33307 8.37246 8.88135 10.04086 10.59316 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.043645 B = 0.010155 C = 0.008702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.380193 B = 2756.472675 C = 3216.771481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.111 4.111 3 N -0.188 5.188 4 N -0.284 5.284 5 C 0.326 3.674 6 C -0.389 4.389 7 H 0.095 0.905 8 C 0.061 3.939 9 N -0.705 5.705 10 Si 0.924 3.076 11 H -0.258 1.258 12 H -0.269 1.269 13 H -0.269 1.269 14 N -0.565 5.565 15 C 0.317 3.683 16 N -0.487 5.487 17 C 0.034 3.966 18 C 0.033 3.967 19 H 0.050 0.950 20 H 0.063 0.937 21 H 0.054 0.946 22 H 0.282 0.718 23 H 0.039 0.961 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.899 -6.147 -0.010 6.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.261 4.261 3 N -0.043 5.043 4 N -0.144 5.144 5 C 0.087 3.913 6 C -0.426 4.426 7 H 0.113 0.887 8 C -0.167 4.167 9 N -0.327 5.327 10 Si 0.747 3.253 11 H -0.181 1.181 12 H -0.194 1.194 13 H -0.194 1.194 14 N -0.292 5.292 15 C 0.064 3.936 16 N -0.210 5.210 17 C -0.114 4.114 18 C -0.115 4.115 19 H 0.069 0.931 20 H 0.082 0.918 21 H 0.073 0.927 22 H 0.093 0.907 23 H 0.058 0.942 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.769 -4.930 0.003 5.654 hybrid contribution 1.227 -0.976 -0.041 1.568 sum -1.542 -5.906 -0.038 6.104 Atomic orbital electron populations 1.19998 0.89361 1.01156 1.00793 1.22517 0.98093 0.90573 1.14904 1.73326 1.04183 1.24142 1.02679 1.74739 0.96691 1.23875 1.19061 1.21163 0.96091 0.83275 0.90771 1.19364 0.88052 0.94158 1.40989 0.88682 1.26159 1.01809 0.94977 0.93721 1.70067 1.37666 0.98637 1.26309 0.85994 0.80585 0.79868 0.78861 1.18134 1.19441 1.19442 1.69180 1.08806 1.31180 1.20055 1.20396 0.88968 0.91196 0.93004 1.60128 1.54454 1.02746 1.03696 1.22295 1.00132 0.97466 0.91513 1.22300 0.99931 0.97133 0.92130 0.93076 0.91770 0.92700 0.90661 0.94232 0.91329 0.91825 0.91856 0.91372 0.94165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.01 9.91 36.01 0.36 -0.65 15 2 C -0.11 -2.66 6.92 -81.66 -0.57 -3.23 15 3 N -0.19 -5.16 11.55 33.96 0.39 -4.77 15 4 N -0.28 -8.39 9.06 30.84 0.28 -8.11 15 5 C 0.33 9.37 7.43 -157.95 -1.17 8.20 15 6 C -0.39 -10.59 9.39 -37.64 -0.35 -10.94 15 7 H 0.10 2.46 7.85 -52.48 -0.41 2.05 15 8 C 0.06 1.54 5.50 -17.35 -0.10 1.45 15 9 N -0.71 -18.76 11.45 55.55 0.64 -18.12 15 10 Si 0.92 18.22 29.56 -169.99 -5.02 13.19 15 11 H -0.26 -4.99 7.11 56.52 0.40 -4.59 15 12 H -0.27 -5.18 7.11 56.52 0.40 -4.78 15 13 H -0.27 -5.18 7.11 56.52 0.40 -4.78 15 14 N -0.57 -14.93 9.91 -11.73 -0.12 -15.05 15 15 C 0.32 7.46 5.31 -154.83 -0.82 6.64 15 16 N -0.49 -9.21 4.16 -188.68 -0.78 -9.99 15 17 C 0.03 0.56 9.44 60.06 0.57 1.13 15 18 C 0.03 0.55 9.41 60.07 0.57 1.11 15 19 H 0.05 0.89 8.14 -51.93 -0.42 0.46 15 20 H 0.06 1.10 7.70 -51.93 -0.40 0.70 15 21 H 0.05 0.98 8.14 -51.93 -0.42 0.56 15 22 H 0.28 6.65 8.29 -40.82 -0.34 6.31 15 23 H 0.04 0.70 8.03 -51.93 -0.42 0.28 15 24 H 0.07 0.89 8.14 -51.93 -0.42 0.46 15 25 H 0.06 1.07 8.12 -51.93 -0.42 0.64 15 26 H 0.06 1.07 8.11 -51.93 -0.42 0.65 15 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 28 H 0.04 0.71 8.01 -51.93 -0.42 0.30 15 LS Contribution 249.01 15.07 3.75 3.75 Total: -1.00 -30.98 249.01 -5.70 -36.68 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -3.31 Total: -1.28 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -1.52 Total: 3.69 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.41 Total: -56.04 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.02 Total: 13.19 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.98 -5.70 -36.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026471914.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.599 kcal (2) G-P(sol) polarization free energy of solvation -30.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds