Wall clock time and date at job start Mon Mar 30 2020 02:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99358 * 2 1 4 4 H 1.48492 * 109.47296 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47292 * 119.99807 * 3 2 1 6 6 H 1.48499 * 109.46699 * 239.99369 * 3 2 1 7 7 C 1.37872 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99786 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00222 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.05776 * 24.73731 * 9 7 2 11 11 C 1.54427 * 110.07630 * 146.24820 * 9 7 2 12 12 C 1.55033 * 104.16788 * 142.73160 * 11 9 7 13 13 C 1.55034 * 102.85763 * 322.44395 * 12 11 9 14 14 C 1.53278 * 110.07694 * 263.23662 * 9 7 2 15 15 C 1.53692 * 110.49968 * 0.78280 * 14 9 7 16 16 C 1.55120 * 103.59004 * 143.80008 * 15 14 9 17 17 C 1.54946 * 102.40322 * 323.41190 * 16 15 14 18 18 C 1.50842 * 110.82303 * 119.82204 * 14 9 7 19 19 O 1.20761 * 126.46138 * 59.64766 * 18 14 9 20 20 H 0.97005 * 119.99675 * 180.02562 * 1 2 3 21 21 H 1.09011 * 110.47726 * 261.44468 * 11 9 7 22 22 H 1.09000 * 110.48597 * 24.07978 * 11 9 7 23 23 H 1.09001 * 110.74920 * 204.08837 * 12 11 9 24 24 H 1.09003 * 110.85941 * 80.84806 * 12 11 9 25 25 H 1.09001 * 110.50994 * 278.75327 * 13 12 11 26 26 H 1.08993 * 110.51168 * 156.03683 * 13 12 11 27 27 H 1.09005 * 110.59487 * 262.32445 * 15 14 9 28 28 H 1.08995 * 110.60059 * 25.27196 * 15 14 9 29 29 H 1.08998 * 110.81767 * 81.64090 * 16 15 14 30 30 H 1.08996 * 110.81920 * 205.18209 * 16 15 14 31 31 H 1.09002 * 110.43618 * 156.03921 * 17 16 15 32 32 H 1.08996 * 110.44033 * 278.43005 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1027 1.6967 1.2125 6 1 3.1028 1.6964 -1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.2591 -2.3581 -0.4283 11 6 2.0309 -3.5613 -0.8048 12 6 1.8028 -4.8773 -0.0176 13 6 1.8359 -4.4062 1.4590 14 6 1.1344 -3.0393 1.4302 15 6 1.8026 -2.0773 2.4253 16 6 0.8924 -2.1592 3.6787 17 6 -0.5198 -2.2962 3.0560 18 6 -0.3122 -3.1772 1.8349 19 8 -1.1477 -3.8586 1.2909 20 1 -0.4850 -0.8401 0.0004 21 1 1.6290 -3.6452 -1.8146 22 1 3.0921 -3.3141 -0.8349 23 1 2.6049 -5.5888 -0.2140 24 1 0.8339 -5.3129 -0.2622 25 1 2.8648 -4.3005 1.8032 26 1 1.2893 -5.1029 2.0945 27 1 2.8127 -2.4115 2.6624 28 1 1.8168 -1.0627 2.0273 29 1 1.1378 -3.0352 4.2791 30 1 0.9674 -1.2481 4.2722 31 1 -1.2011 -2.7751 3.7594 32 1 -0.9027 -1.3189 2.7621 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034455047.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:16 Heat of formation + Delta-G solvation = -61.794749 kcal Electronic energy + Delta-G solvation = -14624.086386 eV Core-core repulsion = 12355.424045 eV Total energy + Delta-G solvation = -2268.662341 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.85430 -36.66023 -34.20724 -32.86648 -28.18787 -28.03344 -26.11855 -23.88949 -21.69723 -20.16182 -19.77548 -17.81902 -16.34931 -15.25618 -14.98856 -14.54332 -13.79358 -13.57559 -13.51335 -12.79427 -12.61432 -12.20879 -11.94172 -11.49332 -11.06404 -10.88162 -10.57228 -10.40070 -10.32862 -10.25179 -10.09091 -9.65628 -9.53322 -9.25694 -8.76117 -8.38224 -8.25418 -6.42135 -4.08070 2.74067 3.38488 3.40655 3.58841 4.45112 4.90713 5.18064 5.30158 5.49326 5.52463 5.64546 5.71113 5.81446 6.19359 6.23888 6.27498 6.32324 6.34486 6.43639 6.51329 6.55941 6.61101 6.75881 6.87318 6.99045 7.02507 7.28419 7.48747 7.59921 8.19452 8.32826 8.36510 8.79830 9.56825 10.94908 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.030254 B = 0.015061 C = 0.012741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.262035 B = 1858.671606 C = 2197.158845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.019 3.981 3 Si 1.061 2.939 4 H -0.283 1.283 5 H -0.286 1.286 6 H -0.288 1.288 7 C -0.575 4.575 8 H 0.053 0.947 9 C 0.041 3.959 10 H 0.039 0.961 11 C -0.109 4.109 12 C -0.128 4.128 13 C -0.097 4.097 14 C -0.120 4.120 15 C -0.103 4.103 16 C -0.124 4.124 17 C -0.181 4.181 18 C 0.386 3.614 19 O -0.468 6.468 20 H 0.270 0.730 21 H 0.046 0.954 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.118 0.882 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.663 -3.967 5.200 7.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.186 4.186 3 Si 0.889 3.111 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.214 1.214 7 C -0.613 4.613 8 H 0.071 0.929 9 C 0.022 3.978 10 H 0.057 0.943 11 C -0.146 4.146 12 C -0.166 4.166 13 C -0.134 4.134 14 C -0.121 4.121 15 C -0.140 4.140 16 C -0.162 4.162 17 C -0.219 4.219 18 C 0.263 3.737 19 O -0.342 6.342 20 H 0.082 0.918 21 H 0.064 0.936 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.136 0.864 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.014 -2.668 4.912 6.351 hybrid contribution 0.184 -1.672 0.097 1.684 sum 3.197 -4.339 5.009 7.358 Atomic orbital electron populations 1.70827 1.06824 1.30759 1.45734 1.25830 0.96551 1.02465 0.93719 0.83647 0.75055 0.75652 0.76734 1.20794 1.21188 1.21412 1.21831 0.94186 0.91052 1.54265 0.92879 1.19427 0.96887 0.93877 0.87617 0.94280 1.22468 1.00469 0.93896 0.97813 1.22582 1.00308 0.97949 0.95759 1.22229 0.99526 0.95009 0.96673 1.22277 0.92490 0.95639 1.01716 1.22695 0.95940 1.03830 0.91552 1.22503 0.94528 1.00723 0.98422 1.22901 0.99049 1.02180 0.97733 1.24920 0.90203 0.76144 0.82432 1.90282 1.51125 1.36649 1.56177 0.91813 0.93551 0.92367 0.92979 0.92212 0.91505 0.93462 0.92764 0.86437 0.92587 0.91505 0.90830 0.87706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.79 13.64 55.43 0.76 -25.04 16 2 C 0.02 0.51 4.53 -17.82 -0.08 0.43 16 3 Si 1.06 23.61 29.90 -169.99 -5.08 18.52 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.58 -14.75 5.82 -34.44 -0.20 -14.95 16 8 H 0.05 1.36 7.68 -52.49 -0.40 0.95 16 9 C 0.04 0.99 2.48 -90.88 -0.23 0.77 16 10 H 0.04 1.08 5.85 -51.93 -0.30 0.77 16 11 C -0.11 -2.32 6.37 -24.91 -0.16 -2.48 16 12 C -0.13 -2.41 6.91 -24.58 -0.17 -2.58 16 13 C -0.10 -1.82 5.93 -25.31 -0.15 -1.97 16 14 C -0.12 -2.55 0.78 -154.74 -0.12 -2.67 16 15 C -0.10 -2.07 5.32 -25.25 -0.13 -2.20 16 16 C -0.12 -2.12 6.95 -24.58 -0.17 -2.29 16 17 C -0.18 -3.41 6.73 -26.21 -0.18 -3.58 16 18 C 0.39 8.46 6.11 -28.32 -0.17 8.29 16 19 O -0.47 -11.31 17.99 6.00 0.11 -11.20 16 20 H 0.27 7.86 6.48 -40.82 -0.26 7.59 16 21 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 22 H 0.06 1.22 7.76 -51.93 -0.40 0.82 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.07 1.16 7.40 -51.93 -0.38 0.77 16 26 H 0.05 0.84 7.83 -51.93 -0.41 0.43 16 27 H 0.05 1.00 7.37 -51.93 -0.38 0.62 16 28 H 0.12 2.71 4.96 -51.93 -0.26 2.45 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.10 2.12 8.14 -51.93 -0.42 1.69 16 LS Contribution 253.13 15.07 3.81 3.81 Total: -1.00 -28.19 253.13 -6.73 -34.92 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -4.56 Total: 2.22 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: -1.76 Total: -23.24 kcal Atomic # 7 Polarization: -25.79 SS G_CDS: 0.76 Total: -25.04 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.11 Total: -11.20 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -5.08 Total: 18.52 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.19 -6.73 -34.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034455047.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.876 kcal (2) G-P(sol) polarization free energy of solvation -28.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds