Wall clock time and date at job start Mon Mar 30 2020 02:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99358 * 2 1 4 4 H 1.48492 * 109.47296 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47292 * 119.99807 * 3 2 1 6 6 H 1.48499 * 109.46699 * 239.99369 * 3 2 1 7 7 C 1.37872 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99786 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00222 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.05776 * 24.73731 * 9 7 2 11 11 C 1.54427 * 110.07630 * 146.24820 * 9 7 2 12 12 C 1.55033 * 104.16788 * 142.73160 * 11 9 7 13 13 C 1.55034 * 102.85763 * 322.44395 * 12 11 9 14 14 C 1.53278 * 110.07694 * 263.23662 * 9 7 2 15 15 C 1.53692 * 110.49968 * 0.78280 * 14 9 7 16 16 C 1.55120 * 103.59004 * 143.80008 * 15 14 9 17 17 C 1.54946 * 102.40322 * 323.41190 * 16 15 14 18 18 C 1.50842 * 110.82303 * 119.82204 * 14 9 7 19 19 O 1.20761 * 126.46138 * 59.64766 * 18 14 9 20 20 H 0.97005 * 119.99675 * 180.02562 * 1 2 3 21 21 H 1.09011 * 110.47726 * 261.44468 * 11 9 7 22 22 H 1.09000 * 110.48597 * 24.07978 * 11 9 7 23 23 H 1.09001 * 110.74920 * 204.08837 * 12 11 9 24 24 H 1.09003 * 110.85941 * 80.84806 * 12 11 9 25 25 H 1.09001 * 110.50994 * 278.75327 * 13 12 11 26 26 H 1.08993 * 110.51168 * 156.03683 * 13 12 11 27 27 H 1.09005 * 110.59487 * 262.32445 * 15 14 9 28 28 H 1.08995 * 110.60059 * 25.27196 * 15 14 9 29 29 H 1.08998 * 110.81767 * 81.64090 * 16 15 14 30 30 H 1.08996 * 110.81920 * 205.18209 * 16 15 14 31 31 H 1.09002 * 110.43618 * 156.03921 * 17 16 15 32 32 H 1.08996 * 110.44033 * 278.43005 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1027 1.6967 1.2125 6 1 3.1028 1.6964 -1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.2591 -2.3581 -0.4283 11 6 2.0309 -3.5613 -0.8048 12 6 1.8028 -4.8773 -0.0176 13 6 1.8359 -4.4062 1.4590 14 6 1.1344 -3.0393 1.4302 15 6 1.8026 -2.0773 2.4253 16 6 0.8924 -2.1592 3.6787 17 6 -0.5198 -2.2962 3.0560 18 6 -0.3122 -3.1772 1.8349 19 8 -1.1477 -3.8586 1.2909 20 1 -0.4850 -0.8401 0.0004 21 1 1.6290 -3.6452 -1.8146 22 1 3.0921 -3.3141 -0.8349 23 1 2.6049 -5.5888 -0.2140 24 1 0.8339 -5.3129 -0.2622 25 1 2.8648 -4.3005 1.8032 26 1 1.2893 -5.1029 2.0945 27 1 2.8127 -2.4115 2.6624 28 1 1.8168 -1.0627 2.0273 29 1 1.1378 -3.0352 4.2791 30 1 0.9674 -1.2481 4.2722 31 1 -1.2011 -2.7751 3.7594 32 1 -0.9027 -1.3189 2.7621 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034455047.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:16 Heat of formation + Delta-G solvation = -77.222946 kcal Electronic energy + Delta-G solvation = -14624.755403 eV Core-core repulsion = 12355.424045 eV Total energy + Delta-G solvation = -2269.331358 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.54173 -38.43304 -35.77671 -34.80598 -29.91586 -29.69460 -27.71595 -25.81861 -23.31086 -21.72706 -21.48209 -19.60187 -18.22111 -16.96252 -16.62321 -16.15515 -15.59963 -15.34973 -15.15980 -14.55755 -14.27290 -13.81441 -13.47941 -13.22541 -12.81332 -12.53220 -12.15578 -12.02359 -11.90304 -11.87795 -11.75695 -11.32329 -11.19097 -10.97463 -10.61238 -10.36861 -10.04085 -8.52139 -6.16712 1.01708 1.58832 1.64835 1.82907 2.61372 3.23604 3.33718 3.68443 3.91065 3.93940 4.18409 4.21044 4.29221 4.63919 4.69355 4.77609 4.78781 4.80405 4.86605 4.98868 5.05725 5.11915 5.15366 5.24838 5.32345 5.46873 5.54805 5.61868 5.95325 6.17920 6.27645 6.61926 6.70101 7.55185 8.84549 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.030254 B = 0.015061 C = 0.012741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.262035 B = 1858.671606 C = 2197.158845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.026 4.026 3 Si 1.103 2.897 4 H -0.293 1.293 5 H -0.260 1.260 6 H -0.277 1.277 7 C -0.569 4.569 8 H 0.055 0.945 9 C 0.032 3.968 10 H -0.008 1.008 11 C -0.110 4.110 12 C -0.121 4.121 13 C -0.093 4.093 14 C -0.123 4.123 15 C -0.105 4.105 16 C -0.111 4.111 17 C -0.179 4.179 18 C 0.374 3.626 19 O -0.500 6.500 20 H 0.252 0.748 21 H 0.037 0.963 22 H 0.064 0.936 23 H 0.086 0.914 24 H 0.046 0.954 25 H 0.089 0.911 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.600 -4.576 6.876 9.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.224 4.224 3 Si 0.926 3.074 4 H -0.219 1.219 5 H -0.185 1.185 6 H -0.203 1.203 7 C -0.607 4.607 8 H 0.073 0.927 9 C 0.013 3.987 10 H 0.010 0.990 11 C -0.148 4.148 12 C -0.158 4.158 13 C -0.130 4.130 14 C -0.124 4.124 15 C -0.142 4.142 16 C -0.148 4.148 17 C -0.216 4.216 18 C 0.254 3.746 19 O -0.377 6.377 20 H 0.063 0.937 21 H 0.055 0.945 22 H 0.083 0.917 23 H 0.105 0.895 24 H 0.065 0.935 25 H 0.108 0.892 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.979 -3.292 6.599 8.898 hybrid contribution -0.427 -1.519 -0.484 1.650 sum 4.551 -4.811 6.114 9.014 Atomic orbital electron populations 1.70954 1.08010 1.29620 1.48889 1.27029 0.96388 1.05808 0.93184 0.83104 0.74252 0.71923 0.78109 1.21934 1.18507 1.20312 1.22019 0.94160 0.91723 1.52785 0.92698 1.19445 0.94589 0.94714 0.89993 0.99002 1.22434 1.00158 0.94768 0.97421 1.22536 1.00889 0.97027 0.95397 1.22261 1.00600 0.93397 0.96736 1.22263 0.92798 0.97524 0.99864 1.22577 0.97625 1.01470 0.92508 1.22504 0.91850 1.03088 0.97384 1.22910 1.01231 1.00500 0.97006 1.25464 0.90373 0.75686 0.83076 1.90256 1.51920 1.38248 1.57316 0.93723 0.94459 0.91686 0.89538 0.93531 0.89237 0.92138 0.90712 0.89717 0.89471 0.89721 0.88205 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.21 13.64 21.45 0.29 -54.92 16 2 C -0.03 -1.38 4.53 84.65 0.38 -1.00 16 3 Si 1.10 47.34 29.90 68.60 2.05 49.39 16 4 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 6 H -0.28 -11.34 7.11 99.48 0.71 -10.64 16 7 C -0.57 -29.24 5.82 25.60 0.15 -29.09 16 8 H 0.05 2.75 7.68 -2.91 -0.02 2.73 16 9 C 0.03 1.55 2.48 -10.96 -0.03 1.53 16 10 H -0.01 -0.49 5.85 -2.39 -0.01 -0.50 16 11 C -0.11 -4.65 6.37 31.77 0.20 -4.44 16 12 C -0.12 -4.30 6.91 31.99 0.22 -4.08 16 13 C -0.09 -3.20 5.93 31.52 0.19 -3.01 16 14 C -0.12 -5.11 0.78 -52.33 -0.04 -5.15 16 15 C -0.10 -3.96 5.32 31.55 0.17 -3.79 16 16 C -0.11 -3.42 6.95 31.99 0.22 -3.20 16 17 C -0.18 -6.51 6.73 30.93 0.21 -6.30 16 18 C 0.37 16.37 6.11 29.56 0.18 16.55 16 19 O -0.50 -24.64 17.99 -1.45 -0.03 -24.66 16 20 H 0.25 15.49 6.48 -92.70 -0.60 14.89 16 21 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 22 H 0.06 2.63 7.76 -2.39 -0.02 2.61 16 23 H 0.09 2.49 8.14 -2.39 -0.02 2.48 16 24 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.09 2.70 7.40 -2.39 -0.02 2.68 16 26 H 0.06 1.95 7.83 -2.39 -0.02 1.93 16 27 H 0.07 2.48 7.37 -2.38 -0.02 2.47 16 28 H 0.08 3.81 4.96 -2.39 -0.01 3.80 16 29 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 32 H 0.09 3.48 8.14 -2.39 -0.02 3.47 16 Total: -1.00 -62.50 253.13 5.44 -57.06 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 1.26 Total: 15.13 kcal Atomic # 6 Polarization: -43.85 SS G_CDS: 1.85 Total: -42.00 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: 0.29 Total: -54.92 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.03 Total: -24.66 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.05 Total: 49.39 kcal Total: -62.50 5.44 -57.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034455047.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.162 kcal (2) G-P(sol) polarization free energy of solvation -62.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds