Wall clock time and date at job start Mon Mar 30 2020 02:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86804 * 119.99616 * 2 1 4 4 H 1.48503 * 109.46736 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47265 * 299.99945 * 3 2 1 6 6 H 1.48498 * 109.47057 * 60.00256 * 3 2 1 7 7 C 1.37873 * 120.00387 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00290 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99845 * 359.97438 * 7 2 1 10 10 H 1.08999 * 110.05759 * 333.70599 * 9 7 2 11 11 C 1.54912 * 110.06155 * 212.19567 * 9 7 2 12 12 C 1.54945 * 103.97963 * 217.26950 * 11 9 7 13 13 C 1.55016 * 102.99037 * 37.59786 * 12 11 9 14 14 C 1.53275 * 110.07746 * 95.20583 * 9 7 2 15 15 C 1.53693 * 110.48279 * 239.54856 * 14 9 7 16 16 C 1.55126 * 103.58623 * 143.80795 * 15 14 9 17 17 C 1.54945 * 102.41225 * 323.42498 * 16 15 14 18 18 C 1.50831 * 110.83899 * 358.59947 * 14 9 7 19 19 O 1.20759 * 126.47057 * 59.67150 * 18 14 9 20 20 H 0.97000 * 120.00018 * 359.97438 * 1 2 3 21 21 H 1.09000 * 110.68389 * 98.61478 * 11 9 7 22 22 H 1.09001 * 110.50090 * 335.83063 * 11 9 7 23 23 H 1.08999 * 110.74291 * 279.16911 * 12 11 9 24 24 H 1.09003 * 110.74055 * 156.02340 * 12 11 9 25 25 H 1.09002 * 110.51862 * 81.11097 * 13 12 11 26 26 H 1.09001 * 110.51537 * 203.69119 * 13 12 11 27 27 H 1.08999 * 110.60070 * 262.33040 * 15 14 9 28 28 H 1.08993 * 110.60033 * 25.28845 * 15 14 9 29 29 H 1.08998 * 110.81982 * 205.19046 * 16 15 14 30 30 H 1.09002 * 110.99090 * 81.72748 * 16 15 14 31 31 H 1.09002 * 110.43842 * 278.55108 * 17 16 15 32 32 H 1.08992 * 110.54570 * 156.08080 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.2695 -2.3640 0.4534 11 6 2.0522 -3.5752 0.7742 12 6 1.8028 -4.8772 -0.0278 13 6 1.8016 -4.3860 -1.4981 14 6 1.1007 -3.0198 -1.4343 15 6 -0.3849 -3.1667 -1.7999 16 6 -0.4334 -2.7623 -3.2967 17 6 0.6122 -1.6211 -3.3674 18 6 1.7179 -2.0605 -2.4211 19 8 2.8724 -1.7079 -2.4534 20 1 -0.4850 0.8400 0.0004 21 1 1.6763 -3.6763 1.7923 22 1 3.1141 -3.3291 0.7814 23 1 0.8389 -5.3134 0.2343 24 1 2.6073 -5.5936 0.1392 25 1 2.8221 -4.2749 -1.8646 26 1 1.2425 -5.0754 -2.1307 27 1 -0.7114 -4.1986 -1.6707 28 1 -0.9959 -2.4921 -1.2004 29 1 -1.4242 -2.3973 -3.5674 30 1 -0.1413 -3.5954 -3.9360 31 1 0.1739 -0.6817 -3.0305 32 1 0.9980 -1.5180 -4.3816 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034455048.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:17 Heat of formation + Delta-G solvation = -77.147573 kcal Electronic energy + Delta-G solvation = -14657.184603 eV Core-core repulsion = 12387.856514 eV Total energy + Delta-G solvation = -2269.328090 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.23482 -37.98060 -35.67877 -34.52941 -30.13062 -29.53012 -27.62998 -26.03453 -23.09793 -21.72275 -20.88765 -19.24914 -18.23005 -16.87009 -16.74642 -16.13667 -15.45110 -15.32568 -14.66915 -14.30633 -13.93005 -13.67086 -13.38446 -13.20461 -12.92551 -12.64605 -12.45705 -11.93058 -11.87585 -11.83302 -11.67558 -11.42380 -11.08734 -10.90221 -10.81421 -10.50173 -9.74528 -8.14315 -6.16060 1.27451 1.31728 1.43288 1.53708 2.39676 3.13410 3.58546 3.86186 4.07626 4.08943 4.30211 4.33988 4.43608 4.75162 4.83643 4.90283 4.92201 4.95949 5.00659 5.12277 5.19070 5.21748 5.31224 5.35479 5.43880 5.52759 5.68048 5.74266 5.86620 5.94204 6.43724 6.93747 7.11224 7.46614 8.92470 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.030122 B = 0.016018 C = 0.013449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.332334 B = 1747.598034 C = 2081.458304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.030 3.970 3 Si 0.919 3.081 4 H -0.284 1.284 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.511 4.511 8 H 0.029 0.971 9 C 0.047 3.953 10 H 0.042 0.958 11 C -0.121 4.121 12 C -0.111 4.111 13 C -0.101 4.101 14 C -0.119 4.119 15 C -0.100 4.100 16 C -0.103 4.103 17 C -0.184 4.184 18 C 0.402 3.598 19 O -0.496 6.496 20 H 0.261 0.739 21 H 0.052 0.948 22 H 0.034 0.966 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.043 0.957 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.942 -8.341 -4.872 10.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.170 4.170 3 Si 0.747 3.253 4 H -0.210 1.210 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.549 4.549 8 H 0.048 0.952 9 C 0.029 3.971 10 H 0.060 0.940 11 C -0.159 4.159 12 C -0.148 4.148 13 C -0.139 4.139 14 C -0.121 4.121 15 C -0.138 4.138 16 C -0.140 4.140 17 C -0.222 4.222 18 C 0.280 3.720 19 O -0.371 6.371 20 H 0.070 0.930 21 H 0.071 0.929 22 H 0.053 0.947 23 H 0.098 0.902 24 H 0.091 0.909 25 H 0.061 0.939 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.493 -8.022 -4.882 9.716 hybrid contribution 0.668 1.659 0.289 1.811 sum -1.826 -6.363 -4.593 8.057 Atomic orbital electron populations 1.69977 1.05912 1.26733 1.51701 1.25362 0.95543 1.00766 0.95332 0.86085 0.79203 0.82163 0.77873 1.20962 1.20690 1.19861 1.21388 0.92049 0.92209 1.49272 0.95241 1.19449 0.96188 0.91967 0.89533 0.94013 1.22601 0.98936 0.95868 0.98494 1.22463 1.02013 0.96244 0.94086 1.22293 0.99200 0.94289 0.98083 1.22230 0.96495 0.95365 0.97969 1.22333 0.93636 1.01766 0.96052 1.22389 0.98232 0.96702 0.96689 1.22944 0.98014 1.01304 0.99911 1.24727 0.87292 0.77781 0.82172 1.90210 1.22429 1.53975 1.70530 0.92999 0.92925 0.94717 0.90175 0.90874 0.93855 0.89049 0.89337 0.92523 0.89694 0.89131 0.90345 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.48 12.83 21.45 0.28 -50.20 16 2 C 0.03 1.66 5.37 84.65 0.45 2.11 16 3 Si 0.92 46.15 29.54 68.60 2.03 48.17 16 4 H -0.28 -14.75 7.11 99.48 0.71 -14.05 16 5 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.51 -28.88 5.56 25.60 0.14 -28.74 16 8 H 0.03 1.80 7.46 -2.91 -0.02 1.78 16 9 C 0.05 2.30 2.61 -10.79 -0.03 2.27 16 10 H 0.04 2.20 6.56 -2.39 -0.02 2.19 16 11 C -0.12 -5.07 6.40 31.91 0.20 -4.87 16 12 C -0.11 -3.57 6.90 31.95 0.22 -3.35 16 13 C -0.10 -3.46 5.81 31.51 0.18 -3.27 16 14 C -0.12 -4.89 0.78 -52.33 -0.04 -4.93 16 15 C -0.10 -3.47 5.79 31.56 0.18 -3.29 16 16 C -0.10 -3.02 6.95 31.99 0.22 -2.80 16 17 C -0.18 -6.93 6.74 30.94 0.21 -6.72 16 18 C 0.40 18.40 5.15 29.57 0.15 18.55 16 19 O -0.50 -26.37 16.38 -1.45 -0.02 -26.40 16 20 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 21 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 22 H 0.03 1.55 7.76 -2.39 -0.02 1.53 16 23 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 24 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.04 1.61 7.79 -2.39 -0.02 1.59 16 26 H 0.09 2.45 7.64 -2.39 -0.02 2.44 16 27 H 0.09 2.47 7.63 -2.39 -0.02 2.45 16 28 H 0.06 2.31 7.48 -2.39 -0.02 2.29 16 29 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 32 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -63.96 255.75 5.26 -58.70 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: 1.09 Total: 4.76 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 1.90 Total: -35.03 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: 0.28 Total: -50.20 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.02 Total: -26.40 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.17 kcal Total: -63.96 5.26 -58.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034455048.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.451 kcal (2) G-P(sol) polarization free energy of solvation -63.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds