Wall clock time and date at job start Mon Mar 30 2020 02:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00310 * 2 1 4 4 H 1.48505 * 109.47211 * 264.70510 * 3 2 1 5 5 H 1.48498 * 109.46967 * 24.70680 * 3 2 1 6 6 H 1.48504 * 109.46875 * 144.70572 * 3 2 1 7 7 C 1.37881 * 119.99431 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00405 * 353.50886 * 7 2 1 9 9 C 1.50705 * 119.99697 * 173.51310 * 7 2 1 10 10 H 1.08994 * 110.05875 * 23.34556 * 9 7 2 11 11 C 1.54427 * 110.07643 * 144.85708 * 9 7 2 12 12 C 1.54942 * 104.21196 * 142.80241 * 11 9 7 13 13 C 1.55024 * 102.82294 * 322.38484 * 12 11 9 14 14 C 1.53279 * 110.12201 * 261.81269 * 9 7 2 15 15 C 1.53701 * 110.48050 * 120.43260 * 14 9 7 16 16 C 1.55116 * 103.58695 * 216.18305 * 15 14 9 17 17 C 1.54940 * 102.40992 * 36.58578 * 16 15 14 18 18 C 1.50837 * 110.84290 * 1.39115 * 14 9 7 19 19 O 1.20751 * 126.46231 * 300.29384 * 18 14 9 20 20 H 0.97009 * 119.99771 * 359.97438 * 1 2 3 21 21 H 1.08999 * 110.48569 * 24.11543 * 11 9 7 22 22 H 1.09008 * 110.59292 * 261.53621 * 11 9 7 23 23 H 1.08995 * 110.74370 * 204.04479 * 12 11 9 24 24 H 1.09001 * 110.74289 * 80.71274 * 12 11 9 25 25 H 1.08998 * 110.51983 * 156.08514 * 13 12 11 26 26 H 1.09008 * 110.51172 * 278.79898 * 13 12 11 27 27 H 1.09000 * 110.60034 * 334.71513 * 15 14 9 28 28 H 1.09002 * 110.59425 * 97.65883 * 15 14 9 29 29 H 1.08997 * 110.82298 * 278.35080 * 16 15 14 30 30 H 1.09008 * 110.81640 * 154.81353 * 16 15 14 31 31 H 1.09008 * 110.43899 * 203.96850 * 17 16 15 32 32 H 1.08995 * 110.44340 * 81.45382 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6086 1.9818 -1.3941 5 1 1.3952 2.6823 0.5852 6 1 3.4863 1.4749 0.8090 7 6 2.0044 -1.1942 -0.0005 8 1 1.4696 -2.1264 0.1048 9 6 3.5042 -1.1983 -0.1480 10 1 3.9134 -0.2381 0.1659 11 6 4.1167 -2.3372 0.6962 12 6 5.2906 -2.8623 -0.1681 13 6 4.7234 -2.7754 -1.6082 14 6 3.8902 -1.4843 -1.6036 15 6 4.7106 -0.3199 -2.1810 16 6 4.2395 -0.2387 -3.6567 17 6 2.7314 -0.5758 -3.5437 18 6 2.6611 -1.6430 -2.4634 19 8 1.7866 -2.4634 -2.3209 20 1 -0.4850 0.8401 0.0004 21 1 3.3829 -3.1258 0.8625 22 1 4.4853 -1.9536 1.6476 23 1 5.5297 -3.8936 0.0912 24 1 6.1665 -2.2227 -0.0590 25 1 5.5333 -2.7049 -2.3342 26 1 4.0912 -3.6373 -1.8223 27 1 4.4841 0.6072 -1.6545 28 1 5.7770 -0.5401 -2.1305 29 1 4.7566 -0.9768 -4.2697 30 1 4.3832 0.7660 -4.0545 31 1 2.3568 -0.9667 -4.4898 32 1 2.1655 0.3064 -3.2447 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034455049.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:19 Heat of formation + Delta-G solvation = -76.534857 kcal Electronic energy + Delta-G solvation = -14707.467440 eV Core-core repulsion = 12438.165920 eV Total energy + Delta-G solvation = -2269.301520 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.39335 -38.09887 -35.80051 -34.55312 -30.76787 -29.62938 -27.73908 -25.89963 -23.11541 -21.84094 -20.91410 -19.29788 -18.71641 -17.04992 -16.90485 -15.91486 -15.52992 -15.34896 -14.77279 -14.50594 -14.34527 -13.76693 -13.50090 -13.35210 -12.86917 -12.83452 -12.15873 -11.96548 -11.92534 -11.79822 -11.70701 -11.42005 -11.19092 -11.14197 -10.94936 -10.64373 -9.81111 -8.25530 -6.27781 1.28337 1.33478 1.42573 1.48782 2.33109 3.04846 3.47068 3.74537 3.95434 3.97821 4.22457 4.26823 4.33899 4.64995 4.69793 4.74970 4.79037 4.88686 4.97095 5.00570 5.07657 5.15474 5.20440 5.26607 5.32166 5.37851 5.56185 5.61987 5.64115 5.74011 6.40253 6.79956 7.08713 7.33502 8.92537 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.027020 B = 0.018026 C = 0.015759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.025899 B = 1552.914463 C = 1776.311521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.006 3.994 3 Si 0.926 3.074 4 H -0.242 1.242 5 H -0.296 1.296 6 H -0.238 1.238 7 C -0.500 4.500 8 H 0.015 0.985 9 C 0.015 3.985 10 H 0.052 0.948 11 C -0.117 4.117 12 C -0.110 4.110 13 C -0.099 4.099 14 C -0.129 4.129 15 C -0.113 4.113 16 C -0.104 4.104 17 C -0.192 4.192 18 C 0.390 3.610 19 O -0.488 6.488 20 H 0.261 0.739 21 H 0.029 0.971 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.038 0.962 27 H 0.054 0.946 28 H 0.109 0.891 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.349 1.518 -6.342 16.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.190 4.190 3 Si 0.750 3.250 4 H -0.166 1.166 5 H -0.223 1.223 6 H -0.161 1.161 7 C -0.538 4.538 8 H 0.033 0.967 9 C -0.004 4.004 10 H 0.070 0.930 11 C -0.155 4.155 12 C -0.147 4.147 13 C -0.136 4.136 14 C -0.131 4.131 15 C -0.150 4.150 16 C -0.141 4.141 17 C -0.230 4.230 18 C 0.267 3.733 19 O -0.363 6.363 20 H 0.070 0.930 21 H 0.047 0.953 22 H 0.081 0.919 23 H 0.092 0.908 24 H 0.109 0.891 25 H 0.119 0.881 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.127 0.873 29 H 0.116 0.884 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 14.733 1.187 -6.269 16.055 hybrid contribution -1.148 0.599 0.448 1.371 sum 13.585 1.787 -5.821 14.887 Atomic orbital electron populations 1.70138 1.08661 1.27622 1.52968 1.26039 0.95357 1.02992 0.94581 0.86075 0.79487 0.78549 0.80938 1.16620 1.22313 1.16146 1.21288 0.91956 0.92336 1.48193 0.96686 1.19836 0.93449 0.96575 0.90529 0.92960 1.22444 0.96821 0.97673 0.98585 1.22500 0.97294 1.01375 0.93575 1.22275 0.98201 0.94304 0.98837 1.22389 0.94827 0.98170 0.97682 1.22537 1.00645 0.96103 0.95684 1.22460 0.91356 1.03615 0.96690 1.23063 1.01133 0.99365 0.99455 1.24819 0.84743 0.80751 0.83004 1.90277 1.38142 1.38186 1.69696 0.92974 0.95251 0.91920 0.90846 0.89053 0.88137 0.94311 0.92684 0.87305 0.88448 0.88771 0.88906 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.34 13.96 21.45 0.30 -62.04 16 2 C 0.01 0.38 5.46 84.66 0.46 0.84 16 3 Si 0.93 42.95 25.84 68.60 1.77 44.72 16 4 H -0.24 -10.08 7.03 99.48 0.70 -9.38 16 5 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 6 H -0.24 -9.96 6.38 99.48 0.63 -9.33 16 7 C -0.50 -29.41 6.12 25.60 0.16 -29.26 16 8 H 0.01 1.04 7.62 -2.91 -0.02 1.02 16 9 C 0.01 0.68 2.24 -10.96 -0.02 0.65 16 10 H 0.05 2.28 4.23 -2.39 -0.01 2.27 16 11 C -0.12 -4.68 6.37 31.74 0.20 -4.47 16 12 C -0.11 -3.22 6.91 31.95 0.22 -3.00 16 13 C -0.10 -3.12 5.81 31.51 0.18 -2.94 16 14 C -0.13 -4.92 0.78 -52.33 -0.04 -4.96 16 15 C -0.11 -3.23 5.79 31.56 0.18 -3.05 16 16 C -0.10 -2.60 6.95 31.98 0.22 -2.38 16 17 C -0.19 -6.85 6.73 30.93 0.21 -6.64 16 18 C 0.39 17.70 5.22 29.57 0.15 17.85 16 19 O -0.49 -27.48 16.31 -1.42 -0.02 -27.51 16 20 H 0.26 16.00 8.31 -92.70 -0.77 15.23 16 21 H 0.03 1.32 7.77 -2.39 -0.02 1.31 16 22 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 23 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.10 2.33 7.63 -2.39 -0.02 2.31 16 26 H 0.04 1.41 7.79 -2.38 -0.02 1.39 16 27 H 0.05 1.72 5.84 -2.39 -0.01 1.70 16 28 H 0.11 2.28 7.63 -2.39 -0.02 2.26 16 29 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.09 2.95 8.14 -2.38 -0.02 2.93 16 32 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -75.63 248.82 4.99 -70.64 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 1.01 Total: 11.54 kcal Atomic # 6 Polarization: -39.28 SS G_CDS: 1.93 Total: -37.35 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: 0.30 Total: -62.04 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.02 Total: -27.51 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.77 Total: 44.72 kcal Total: -75.63 4.99 -70.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034455049.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.896 kcal (2) G-P(sol) polarization free energy of solvation -75.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds