Wall clock time and date at job start Mon Mar 30 2020 02:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30522 * 1 3 3 Si 1.86798 * 119.99556 * 2 1 4 4 H 1.48501 * 109.46774 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47417 * 300.00155 * 3 2 1 6 6 H 1.48498 * 109.47143 * 60.00382 * 3 2 1 7 7 C 1.40457 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99903 * 180.02562 * 7 2 1 9 9 C 1.41024 * 120.00067 * 359.97438 * 7 2 1 10 10 O 1.21431 * 120.00288 * 0.02562 * 9 7 2 11 11 C 1.50706 * 119.99952 * 180.02562 * 9 7 2 12 12 C 1.52997 * 109.46985 * 179.97438 * 11 9 7 13 13 H 1.09005 * 110.44894 * 304.05829 * 12 11 9 14 14 C 1.54578 * 110.40290 * 66.45187 * 12 11 9 15 15 C 1.55928 * 104.64380 * 118.79197 * 14 12 11 16 16 H 1.09004 * 115.91591 * 199.96583 * 15 14 12 17 17 C 1.55919 * 104.49868 * 70.27573 * 15 14 12 18 18 C 1.54929 * 104.60644 * 289.70373 * 17 15 14 19 19 C 1.55934 * 104.59973 * 0.02562 * 18 17 15 20 20 H 1.08995 * 116.52967 * 199.62462 * 19 18 17 21 21 C 1.56948 * 100.65080 * 326.21643 * 15 14 12 22 22 H 0.96999 * 120.00144 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.46981 * 59.99554 * 11 9 7 24 24 H 1.08999 * 109.46430 * 299.99841 * 11 9 7 25 25 H 1.09002 * 110.40502 * 359.97438 * 14 12 11 26 26 H 1.09005 * 110.50055 * 237.63140 * 14 12 11 27 27 H 1.09001 * 110.40633 * 48.51708 * 17 15 14 28 28 H 1.09007 * 110.40167 * 170.93078 * 17 15 14 29 29 H 1.08999 * 110.41361 * 241.23337 * 18 17 15 30 30 H 1.08997 * 110.43927 * 118.78044 * 18 17 15 31 31 H 1.09002 * 112.02663 * 170.30821 * 21 15 14 32 32 H 1.09000 * 112.02645 * 296.75383 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2391 1.6178 0.0000 4 1 3.6991 1.3465 -0.0006 5 1 1.8803 2.3965 -1.2124 6 1 1.8804 2.3964 1.2125 7 6 2.0075 -1.2164 -0.0005 8 1 3.0875 -1.2164 -0.0001 9 6 1.3024 -2.4377 -0.0005 10 8 0.0881 -2.4378 -0.0005 11 6 2.0560 -3.7428 -0.0005 12 6 1.0617 -4.9057 0.0001 13 1 0.3798 -4.8233 0.8465 14 6 0.2711 -4.9395 -1.3277 15 6 0.6250 -6.3192 -1.9623 16 1 0.4512 -6.4090 -3.0346 17 6 -0.0902 -7.3629 -1.0510 18 6 0.7032 -7.3286 0.2793 19 6 1.8207 -6.2670 0.0433 20 1 2.6832 -6.3119 0.7082 21 6 2.1105 -6.4860 -1.4840 22 1 -0.4850 0.8400 0.0004 23 1 2.6827 -3.8005 0.8894 24 1 2.6826 -3.8005 -0.8906 25 1 0.5903 -4.1273 -1.9809 26 1 -0.7999 -4.8729 -1.1361 27 1 -1.1275 -7.0733 -0.8831 28 1 -0.0396 -8.3557 -1.4982 29 1 1.1431 -8.3045 0.4848 30 1 0.0559 -7.0220 1.1008 31 1 2.4959 -7.4849 -1.6882 32 1 2.7605 -5.7119 -1.8918 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034939690.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:00 Heat of formation + Delta-G solvation = -78.073911 kcal Electronic energy + Delta-G solvation = -13902.287261 eV Core-core repulsion = 11632.919002 eV Total energy + Delta-G solvation = -2269.368259 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.21187 -38.63363 -34.79519 -32.93550 -30.41270 -29.52740 -28.59541 -26.67515 -22.84087 -21.16357 -20.48601 -19.45675 -18.32616 -17.17359 -16.82055 -16.09882 -15.93849 -15.10849 -14.78802 -14.38130 -13.50678 -13.34512 -13.11493 -12.85061 -12.62809 -12.40908 -12.23104 -12.10448 -12.01807 -11.93235 -11.65672 -11.52951 -11.27468 -11.12775 -10.97149 -10.73860 -9.43060 -8.24760 -7.06249 1.32260 1.35522 1.53460 2.20900 2.23214 3.42144 3.63067 3.66502 3.68458 4.28117 4.34160 4.38782 4.51280 4.58089 4.58243 4.65816 4.76328 4.95225 4.98102 5.02278 5.10023 5.13967 5.20741 5.24641 5.34500 5.35155 5.43594 5.51994 5.58318 5.64047 5.99617 6.75096 6.87804 8.32858 8.56315 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.068599 B = 0.007679 C = 0.007437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.071641 B = 3645.210364 C = 3763.989296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.026 3.974 3 Si 0.991 3.009 4 H -0.248 1.248 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.574 4.574 8 H 0.081 0.919 9 C 0.338 3.662 10 O -0.586 6.586 11 C -0.142 4.142 12 C -0.067 4.067 13 H 0.035 0.965 14 C -0.096 4.096 15 C -0.107 4.107 16 H 0.106 0.894 17 C -0.115 4.115 18 C -0.117 4.117 19 C -0.099 4.099 20 H 0.107 0.893 21 C -0.115 4.115 22 H 0.279 0.721 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.028 0.972 26 H 0.032 0.968 27 H 0.049 0.951 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.237 -10.716 -2.025 12.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.193 4.193 3 Si 0.810 3.190 4 H -0.171 1.171 5 H -0.190 1.190 6 H -0.189 1.189 7 C -0.605 4.605 8 H 0.099 0.901 9 C 0.236 3.764 10 O -0.478 6.478 11 C -0.180 4.180 12 C -0.085 4.085 13 H 0.053 0.947 14 C -0.133 4.133 15 C -0.125 4.125 16 H 0.124 0.876 17 C -0.152 4.152 18 C -0.154 4.154 19 C -0.117 4.117 20 H 0.125 0.875 21 C -0.152 4.152 22 H 0.089 0.911 23 H 0.090 0.910 24 H 0.092 0.908 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.479 -10.692 -2.014 11.765 hybrid contribution -0.036 1.234 0.153 1.244 sum 4.443 -9.458 -1.861 10.614 Atomic orbital electron populations 1.70106 1.09804 1.29408 1.32962 1.27234 0.95459 1.05472 0.91104 0.85074 0.79560 0.75441 0.78917 1.17066 1.18950 1.18917 1.21432 0.95796 0.93387 1.49879 0.90081 1.20325 0.88921 0.90371 0.76819 1.90344 1.17394 1.90040 1.50046 1.21949 0.98899 0.95512 1.01624 1.21884 0.95762 0.94187 0.96714 0.94687 1.22404 0.98092 0.96678 0.96172 1.23677 0.96400 0.93734 0.98657 0.87639 1.22635 0.98159 0.99093 0.95351 1.22644 0.96649 0.99043 0.97065 1.23683 0.97301 0.93127 0.97559 0.87493 1.23540 0.95465 1.01699 0.94502 0.91085 0.91040 0.90840 0.95334 0.94896 0.93242 0.89617 0.89536 0.93296 0.88928 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -48.33 11.72 21.91 0.26 -48.07 16 2 C 0.03 1.43 5.50 85.43 0.47 1.90 16 3 Si 0.99 40.84 29.56 68.60 2.03 42.87 16 4 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 5 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 7 C -0.57 -33.21 9.22 23.49 0.22 -33.00 16 8 H 0.08 4.29 7.85 -2.91 -0.02 4.27 16 9 C 0.34 19.85 6.45 26.37 0.17 20.02 16 10 O -0.59 -38.90 13.63 -3.50 -0.05 -38.95 16 11 C -0.14 -6.46 4.88 29.85 0.15 -6.31 16 12 C -0.07 -2.74 1.93 -9.25 -0.02 -2.76 16 13 H 0.03 1.63 7.70 -2.38 -0.02 1.61 16 14 C -0.10 -3.94 4.74 32.14 0.15 -3.79 16 15 C -0.11 -3.14 5.19 -7.38 -0.04 -3.18 16 16 H 0.11 2.76 8.14 -2.38 -0.02 2.74 16 17 C -0.11 -2.97 6.22 32.26 0.20 -2.77 16 18 C -0.12 -3.03 6.22 32.27 0.20 -2.83 16 19 C -0.10 -2.92 4.59 -7.37 -0.03 -2.95 16 20 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 21 C -0.11 -3.07 6.33 33.38 0.21 -2.85 16 22 H 0.28 15.20 8.29 -92.71 -0.77 14.43 16 23 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 24 H 0.07 3.12 7.28 -2.39 -0.02 3.11 16 25 H 0.03 1.32 7.41 -2.39 -0.02 1.31 16 26 H 0.03 1.47 7.84 -2.38 -0.02 1.45 16 27 H 0.05 1.39 7.84 -2.39 -0.02 1.37 16 28 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.05 1.40 7.83 -2.39 -0.02 1.38 16 31 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.06 1.71 7.29 -2.39 -0.02 1.69 16 Total: -1.00 -71.42 255.72 5.00 -66.42 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 1.09 Total: 16.26 kcal Atomic # 6 Polarization: -40.20 SS G_CDS: 1.68 Total: -38.52 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.26 Total: -48.07 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -0.05 Total: -38.95 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -71.42 5.00 -66.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034939690.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.654 kcal (2) G-P(sol) polarization free energy of solvation -71.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds