Wall clock time and date at job start Mon Mar 30 2020 02:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35774 * 116.99722 * 2 1 4 4 C 1.38892 * 119.60330 * 180.02562 * 3 2 1 5 5 C 1.38345 * 119.18738 * 179.97438 * 4 3 2 6 6 C 1.39376 * 118.42274 * 359.97438 * 5 4 3 7 7 N 1.39987 * 120.42831 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00333 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47294 * 179.97438 * 8 7 6 10 10 H 1.07997 * 119.99751 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00077 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99943 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99934 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47044 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46864 * 120.00258 * 13 11 9 16 16 H 1.48493 * 109.47318 * 240.00075 * 13 11 9 17 17 C 1.38671 * 119.14890 * 359.97438 * 6 5 4 18 18 N 1.31976 * 120.72722 * 0.02562 * 17 6 5 19 19 H 1.09005 * 109.46621 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.46834 * 299.99661 * 1 2 3 21 21 H 1.08998 * 109.47498 * 60.00165 * 1 2 3 22 22 H 1.08002 * 120.40513 * 0.24659 * 4 3 2 23 23 H 1.08003 * 120.78647 * 180.02562 * 5 4 3 24 24 H 0.97000 * 119.99518 * 0.02562 * 7 6 5 25 25 H 1.09000 * 109.46991 * 300.00271 * 8 7 6 26 26 H 1.09003 * 109.46335 * 59.99907 * 8 7 6 27 27 H 0.96999 * 120.00355 * 179.97438 * 12 11 9 28 28 H 1.07996 * 119.64024 * 179.97438 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 3.4328 1.2729 -0.0005 5 6 4.0519 2.5102 -0.0011 6 6 3.2525 3.6519 -0.0016 7 7 3.8347 4.9250 -0.0016 8 6 2.9857 6.1188 -0.0027 9 6 3.8523 7.3516 -0.0019 10 1 4.9280 7.2555 -0.0010 11 6 3.2719 8.6023 -0.0032 12 7 1.9620 8.7194 -0.0048 13 14 4.3462 10.1305 -0.0014 14 1 5.7763 9.7302 0.0008 15 1 4.0605 10.9378 -1.2146 16 1 4.0559 10.9382 1.2103 17 6 1.8731 3.5106 -0.0021 18 7 1.3178 2.3134 -0.0016 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 4.0212 0.3673 -0.0050 23 1 5.1290 2.5894 -0.0019 24 1 4.8004 5.0166 -0.0016 25 1 2.3570 6.1167 -0.8932 26 1 2.3557 6.1173 0.8868 27 1 1.5537 9.5992 -0.0053 28 1 1.2461 4.3900 -0.0021 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036730515.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:42 Heat of formation + Delta-G solvation = -26.803861 kcal Electronic energy + Delta-G solvation = -12831.311811 eV Core-core repulsion = 10460.626446 eV Total energy + Delta-G solvation = -2370.685366 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.41848 -39.01857 -36.67490 -34.65201 -33.16838 -30.74055 -28.53782 -27.56525 -25.33286 -23.71188 -22.87690 -19.22664 -19.19408 -17.75685 -17.33313 -16.82107 -16.61945 -15.63135 -15.32299 -15.13903 -14.77308 -14.18421 -14.03171 -14.01985 -13.52904 -12.84215 -12.72345 -12.58756 -12.20218 -12.14452 -11.43212 -11.24870 -10.72742 -10.56107 -10.20062 -8.30053 -8.09030 -6.43486 0.27572 0.59954 1.42238 1.42713 1.55597 2.31443 2.36562 2.84125 2.93672 3.06010 3.55366 4.03967 4.12858 4.30273 4.49539 4.56091 4.76725 4.80881 4.91094 5.05644 5.17861 5.29869 5.43299 5.58451 5.88231 6.33315 6.43415 6.70316 6.94933 7.17303 7.30199 8.81840 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.075334 B = 0.006014 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.591106 B = 4655.000345 C = 5006.144995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.322 6.322 3 C 0.224 3.776 4 C -0.128 4.128 5 C -0.122 4.122 6 C 0.138 3.862 7 N -0.724 5.724 8 C 0.268 3.732 9 C -0.554 4.554 10 H 0.074 0.926 11 C 0.008 3.992 12 N -0.926 5.926 13 Si 0.977 3.023 14 H -0.259 1.259 15 H -0.279 1.279 16 H -0.279 1.279 17 C 0.029 3.971 18 N -0.515 5.515 19 H 0.125 0.875 20 H 0.046 0.954 21 H 0.046 0.954 22 H 0.170 0.830 23 H 0.169 0.831 24 H 0.403 0.597 25 H -0.006 1.006 26 H -0.006 1.006 27 H 0.269 0.731 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.835 -12.877 0.005 13.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.231 6.231 3 C 0.042 3.958 4 C -0.148 4.148 5 C -0.153 4.153 6 C 0.030 3.970 7 N -0.352 5.352 8 C 0.145 3.855 9 C -0.592 4.592 10 H 0.092 0.908 11 C -0.192 4.192 12 N -0.565 5.565 13 Si 0.801 3.199 14 H -0.183 1.183 15 H -0.204 1.204 16 H -0.204 1.204 17 C -0.131 4.131 18 N -0.237 5.237 19 H 0.143 0.857 20 H 0.064 0.936 21 H 0.065 0.935 22 H 0.188 0.812 23 H 0.187 0.813 24 H 0.238 0.762 25 H 0.012 0.988 26 H 0.012 0.988 27 H 0.077 0.923 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.743 -12.903 0.004 13.020 hybrid contribution 0.798 1.368 -0.001 1.584 sum 2.540 -11.535 0.003 11.811 Atomic orbital electron populations 1.22910 0.76961 1.04170 1.01415 1.86154 1.23361 1.24002 1.89572 1.19893 0.90337 0.84490 1.01039 1.21115 0.91251 0.99511 1.02964 1.21212 1.01205 0.89229 1.03615 1.19088 0.93566 0.87475 0.96898 1.45010 1.08854 1.01735 1.79649 1.18629 0.90551 0.82243 0.94087 1.21603 0.94009 0.91166 1.52463 0.90791 1.25910 0.96439 1.02748 0.94070 1.70080 1.11020 1.25226 1.50202 0.85220 0.78968 0.78007 0.77710 1.18285 1.20450 1.20443 1.21740 0.91890 0.93542 1.05968 1.67000 1.41424 0.98640 1.16659 0.85696 0.93557 0.93548 0.81228 0.81313 0.76195 0.98848 0.98848 0.92258 0.84646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.97 10.38 113.37 1.18 2.14 15 2 O -0.32 -9.51 10.48 -91.02 -0.95 -10.46 15 3 C 0.22 7.46 7.49 84.80 0.63 8.10 15 4 C -0.13 -3.57 10.03 22.45 0.23 -3.34 15 5 C -0.12 -3.57 10.04 22.57 0.23 -3.34 15 6 C 0.14 5.18 6.68 38.22 0.26 5.43 15 7 N -0.72 -29.64 5.74 -342.67 -1.97 -31.61 15 8 C 0.27 13.69 4.68 85.63 0.40 14.09 15 9 C -0.55 -29.54 9.28 25.60 0.24 -29.31 15 10 H 0.07 3.69 7.60 -2.91 -0.02 3.67 15 11 C 0.01 0.44 5.46 84.66 0.46 0.91 15 12 N -0.93 -53.73 13.29 21.45 0.28 -53.45 15 13 Si 0.98 41.95 29.54 68.60 2.03 43.98 15 14 H -0.26 -10.49 7.11 99.48 0.71 -9.79 15 15 H -0.28 -11.77 7.11 99.48 0.71 -11.06 15 16 H -0.28 -11.77 7.11 99.48 0.71 -11.06 15 17 C 0.03 1.17 10.49 84.77 0.89 2.06 15 18 N -0.51 -19.61 9.20 -308.42 -2.84 -22.45 15 19 H 0.12 1.98 8.14 -2.38 -0.02 1.96 15 20 H 0.05 1.16 8.10 -2.39 -0.02 1.14 15 21 H 0.05 1.16 8.10 -2.39 -0.02 1.15 15 22 H 0.17 3.47 8.06 -2.91 -0.02 3.45 15 23 H 0.17 3.69 8.06 -2.91 -0.02 3.67 15 24 H 0.40 14.62 8.35 -92.71 -0.77 13.85 15 25 H -0.01 -0.35 7.97 -2.39 -0.02 -0.37 15 26 H -0.01 -0.35 7.96 -2.39 -0.02 -0.37 15 27 H 0.27 14.58 8.31 -92.71 -0.77 13.81 15 28 H 0.14 6.00 6.75 -2.91 -0.02 5.98 15 Total: -1.00 -62.67 251.49 1.45 -61.22 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.39 Total: 16.03 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: 4.51 Total: -3.26 kcal Atomic # 7 Polarization: -102.98 SS G_CDS: -4.52 Total: -107.50 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -0.95 Total: -10.46 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -62.67 1.45 -61.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036730515.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.419 kcal (2) G-P(sol) polarization free energy of solvation -62.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds