Wall clock time and date at job start Mon Mar 30 2020 02:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 119.99924 * 2 1 4 4 H 1.48499 * 109.47059 * 270.00524 * 3 2 1 5 5 H 1.48504 * 109.46871 * 30.00855 * 3 2 1 6 6 H 1.48497 * 109.47144 * 150.00301 * 3 2 1 7 7 C 1.37876 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99800 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00079 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46975 * 179.97438 * 9 7 2 11 11 C 1.52987 * 110.22018 * 297.67310 * 10 9 7 12 12 C 1.53484 * 107.44964 * 225.57793 * 11 10 9 13 13 C 1.53471 * 107.24240 * 358.18241 * 12 11 10 14 14 C 1.54198 * 106.48935 * 17.37148 * 13 12 11 15 15 H 1.08999 * 112.64996 * 97.12502 * 14 13 12 16 16 C 1.54474 * 107.81207 * 222.71900 * 14 13 12 17 17 C 1.54013 * 104.47981 * 82.36899 * 16 14 13 18 18 C 1.50563 * 110.21856 * 61.01715 * 10 9 7 19 19 O 1.20757 * 126.07311 * 299.90851 * 18 10 9 20 20 H 0.96996 * 120.00668 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47047 * 59.99770 * 9 7 2 22 22 H 1.09006 * 109.47359 * 300.00006 * 9 7 2 23 23 H 1.08999 * 109.85507 * 345.05355 * 11 10 9 24 24 H 1.09003 * 109.84912 * 106.10838 * 11 10 9 25 25 H 1.08990 * 109.88673 * 117.59462 * 12 11 10 26 26 H 1.09002 * 109.88345 * 238.61585 * 12 11 10 27 27 H 1.09000 * 110.04910 * 136.63237 * 13 12 11 28 28 H 1.09000 * 110.05296 * 258.11224 * 13 12 11 29 29 H 1.09004 * 110.43107 * 323.62602 * 16 14 13 30 30 H 1.08990 * 110.43698 * 201.11967 * 16 14 13 31 31 H 1.09003 * 110.13314 * 270.08136 * 17 16 14 32 32 H 1.09004 * 110.12678 * 148.39830 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 3.5697 -3.3570 1.2707 12 6 4.7826 -4.1169 1.8249 13 6 5.9478 -3.8841 0.8536 14 6 5.5645 -2.6618 -0.0049 15 1 6.0024 -1.7349 0.3653 16 6 5.9480 -2.9734 -1.4685 17 6 4.7710 -3.8090 -2.0055 18 6 3.5490 -3.3556 -1.2366 19 8 2.3992 -3.5384 -1.5569 20 1 -0.4851 0.8400 0.0004 21 1 3.8752 -0.6803 0.8888 22 1 3.8745 -0.6799 -0.8912 23 1 3.2215 -2.6299 2.0043 24 1 2.7697 -4.0586 1.0342 25 1 5.0406 -3.7339 2.8121 26 1 4.5562 -5.1812 1.8878 27 1 6.8624 -3.6783 1.4097 28 1 6.0852 -4.7589 0.2181 29 1 6.8721 -3.5504 -1.5051 30 1 6.0514 -2.0508 -2.0395 31 1 4.9526 -4.8693 -1.8297 32 1 4.6341 -3.6229 -3.0708 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038523294.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:52 Heat of formation + Delta-G solvation = -60.647662 kcal Electronic energy + Delta-G solvation = -14318.661583 eV Core-core repulsion = 12050.048983 eV Total energy + Delta-G solvation = -2268.612600 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.23480 -36.86947 -33.27571 -32.71480 -30.74549 -27.87905 -26.10919 -24.28461 -21.82558 -20.36531 -19.80903 -17.65348 -16.47163 -15.70015 -14.78830 -14.42164 -14.17832 -14.01065 -13.52687 -13.29965 -12.39800 -12.33180 -11.88609 -11.57268 -11.44219 -11.39055 -10.86878 -10.78617 -10.63990 -10.20722 -10.14507 -10.01418 -9.81035 -9.41814 -9.17561 -8.48142 -8.27643 -5.92870 -3.90044 2.80618 3.33602 3.41199 3.42541 4.51195 4.66104 4.82615 4.98880 5.15310 5.34313 5.39468 5.40640 5.59484 5.82819 5.85072 5.94419 6.00821 6.07521 6.12127 6.23169 6.24645 6.36238 6.40820 6.62063 6.71019 6.81038 6.97843 7.15407 7.28599 7.82800 8.39958 8.65272 9.22812 9.68115 11.20570 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.035545 B = 0.011719 C = 0.011409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.553854 B = 2388.804098 C = 2453.557181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.871 3.129 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.513 4.513 8 H 0.088 0.912 9 C 0.007 3.993 10 C -0.101 4.101 11 C -0.092 4.092 12 C -0.126 4.126 13 C -0.116 4.116 14 C -0.089 4.089 15 H 0.089 0.911 16 C -0.111 4.111 17 C -0.184 4.184 18 C 0.383 3.617 19 O -0.421 6.421 20 H 0.261 0.739 21 H 0.026 0.974 22 H 0.010 0.990 23 H 0.080 0.920 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.776 -6.522 0.402 15.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.698 3.302 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.551 4.551 8 H 0.106 0.894 9 C -0.030 4.030 10 C -0.102 4.102 11 C -0.129 4.129 12 C -0.163 4.163 13 C -0.154 4.154 14 C -0.108 4.108 15 H 0.107 0.893 16 C -0.148 4.148 17 C -0.222 4.222 18 C 0.256 3.744 19 O -0.291 6.291 20 H 0.071 0.929 21 H 0.044 0.956 22 H 0.029 0.971 23 H 0.098 0.902 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.983 -6.510 0.231 14.526 hybrid contribution 0.442 1.039 -0.077 1.131 sum 13.425 -5.472 0.154 14.498 Atomic orbital electron populations 1.69914 1.06194 1.26472 1.51544 1.24997 0.94660 0.98683 0.95037 0.86930 0.80447 0.84419 0.78389 1.20493 1.21446 1.19079 1.21268 0.88949 0.95208 1.49704 0.89436 1.19603 0.97910 0.88880 0.96620 1.21705 0.93614 0.99644 0.95237 1.21664 0.96479 0.98775 0.96023 1.22020 0.95623 0.99837 0.98868 1.22187 0.97966 0.97671 0.97570 1.22449 0.95366 0.98274 0.94686 0.89250 1.22156 0.96878 0.99639 0.96160 1.22641 0.96760 1.01353 1.01479 1.24199 0.88817 0.75060 0.86371 1.90405 1.22240 1.46464 1.69996 0.92949 0.95616 0.97142 0.90172 0.92145 0.92159 0.92503 0.92189 0.92023 0.91215 0.91368 0.88999 0.89712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.67 13.96 55.43 0.77 -27.90 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 21.95 27.47 -169.99 -4.67 17.28 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.51 -14.83 8.15 -34.44 -0.28 -15.12 16 8 H 0.09 2.80 6.52 -52.49 -0.34 2.46 16 9 C 0.01 0.17 2.84 -27.88 -0.08 0.09 16 10 C -0.10 -1.97 0.52 -155.04 -0.08 -2.05 16 11 C -0.09 -1.71 5.32 -26.49 -0.14 -1.85 16 12 C -0.13 -1.78 6.78 -26.24 -0.18 -1.96 16 13 C -0.12 -1.48 6.06 -25.86 -0.16 -1.64 16 14 C -0.09 -1.34 3.53 -88.53 -0.31 -1.65 16 15 H 0.09 1.32 7.95 -51.93 -0.41 0.90 16 16 C -0.11 -1.45 6.11 -25.43 -0.16 -1.61 16 17 C -0.18 -2.73 6.33 -27.05 -0.17 -2.91 16 18 C 0.38 7.79 6.16 -28.79 -0.18 7.61 16 19 O -0.42 -10.46 16.04 6.00 0.10 -10.36 16 20 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 21 H 0.03 0.60 7.19 -51.93 -0.37 0.23 16 22 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 23 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 24 H 0.06 1.20 7.76 -51.93 -0.40 0.80 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.71 7.26 -51.93 -0.38 0.33 16 29 H 0.07 0.73 7.85 -51.93 -0.41 0.32 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 1.17 7.99 -51.93 -0.41 0.75 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 252.19 15.07 3.80 3.80 Total: -1.00 -32.65 252.19 -6.63 -39.28 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -4.80 Total: -2.92 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -1.83 Total: -19.18 kcal Atomic # 7 Polarization: -28.67 SS G_CDS: 0.77 Total: -27.90 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.10 Total: -10.36 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -32.65 -6.63 -39.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038523294.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.367 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds