Wall clock time and date at job start Mon Mar 30 2020 02:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 119.99924 * 2 1 4 4 H 1.48499 * 109.47059 * 270.00524 * 3 2 1 5 5 H 1.48504 * 109.46871 * 30.00855 * 3 2 1 6 6 H 1.48497 * 109.47144 * 150.00301 * 3 2 1 7 7 C 1.37876 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99800 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00079 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46975 * 179.97438 * 9 7 2 11 11 C 1.52987 * 110.22018 * 297.67310 * 10 9 7 12 12 C 1.53484 * 107.44964 * 225.57793 * 11 10 9 13 13 C 1.53471 * 107.24240 * 358.18241 * 12 11 10 14 14 C 1.54198 * 106.48935 * 17.37148 * 13 12 11 15 15 H 1.08999 * 112.64996 * 97.12502 * 14 13 12 16 16 C 1.54474 * 107.81207 * 222.71900 * 14 13 12 17 17 C 1.54013 * 104.47981 * 82.36899 * 16 14 13 18 18 C 1.50563 * 110.21856 * 61.01715 * 10 9 7 19 19 O 1.20757 * 126.07311 * 299.90851 * 18 10 9 20 20 H 0.96996 * 120.00668 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47047 * 59.99770 * 9 7 2 22 22 H 1.09006 * 109.47359 * 300.00006 * 9 7 2 23 23 H 1.08999 * 109.85507 * 345.05355 * 11 10 9 24 24 H 1.09003 * 109.84912 * 106.10838 * 11 10 9 25 25 H 1.08990 * 109.88673 * 117.59462 * 12 11 10 26 26 H 1.09002 * 109.88345 * 238.61585 * 12 11 10 27 27 H 1.09000 * 110.04910 * 136.63237 * 13 12 11 28 28 H 1.09000 * 110.05296 * 258.11224 * 13 12 11 29 29 H 1.09004 * 110.43107 * 323.62602 * 16 14 13 30 30 H 1.08990 * 110.43698 * 201.11967 * 16 14 13 31 31 H 1.09003 * 110.13314 * 270.08136 * 17 16 14 32 32 H 1.09004 * 110.12678 * 148.39830 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 3.5697 -3.3570 1.2707 12 6 4.7826 -4.1169 1.8249 13 6 5.9478 -3.8841 0.8536 14 6 5.5645 -2.6618 -0.0049 15 1 6.0024 -1.7349 0.3653 16 6 5.9480 -2.9734 -1.4685 17 6 4.7710 -3.8090 -2.0055 18 6 3.5490 -3.3556 -1.2366 19 8 2.3992 -3.5384 -1.5569 20 1 -0.4851 0.8400 0.0004 21 1 3.8752 -0.6803 0.8888 22 1 3.8745 -0.6799 -0.8912 23 1 3.2215 -2.6299 2.0043 24 1 2.7697 -4.0586 1.0342 25 1 5.0406 -3.7339 2.8121 26 1 4.5562 -5.1812 1.8878 27 1 6.8624 -3.6783 1.4097 28 1 6.0852 -4.7589 0.2181 29 1 6.8721 -3.5504 -1.5051 30 1 6.0514 -2.0508 -2.0395 31 1 4.9526 -4.8693 -1.8297 32 1 4.6341 -3.6229 -3.0708 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038523294.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:52 Heat of formation + Delta-G solvation = -82.061822 kcal Electronic energy + Delta-G solvation = -14319.590171 eV Core-core repulsion = 12050.048983 eV Total energy + Delta-G solvation = -2269.541187 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.66834 -38.44640 -35.19276 -34.12893 -32.56199 -29.25948 -27.81600 -25.54549 -23.77654 -21.65096 -21.05587 -19.21067 -18.63637 -17.10973 -16.24257 -16.10937 -15.87831 -15.31415 -14.95248 -14.86910 -14.36745 -13.87506 -13.54122 -13.24537 -12.79340 -12.70831 -12.60266 -12.17085 -11.91911 -11.84009 -11.69185 -11.32969 -11.28999 -11.09718 -10.96846 -10.74760 -9.93989 -8.23321 -6.26156 1.21863 1.32246 1.34684 1.45816 2.36473 3.09699 3.34585 3.58155 3.77607 3.90436 4.23714 4.30953 4.39870 4.52258 4.70742 4.73317 4.79484 4.86809 4.94728 5.02920 5.11710 5.16776 5.21085 5.31937 5.34957 5.39864 5.50665 5.53418 5.62065 5.69144 6.37598 6.78381 6.93374 7.35610 8.94298 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.035545 B = 0.011719 C = 0.011409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.553854 B = 2388.804098 C = 2453.557181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.006 4.006 3 Si 0.948 3.052 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.237 1.237 7 C -0.515 4.515 8 H 0.036 0.964 9 C 0.010 3.990 10 C -0.116 4.116 11 C -0.094 4.094 12 C -0.119 4.119 13 C -0.108 4.108 14 C -0.084 4.084 15 H 0.098 0.902 16 C -0.102 4.102 17 C -0.175 4.175 18 C 0.367 3.633 19 O -0.487 6.487 20 H 0.262 0.738 21 H 0.033 0.967 22 H 0.014 0.986 23 H 0.051 0.949 24 H 0.027 0.973 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.114 0.886 30 H 0.069 0.931 31 H 0.122 0.878 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.324 -6.476 0.349 19.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.201 4.201 3 Si 0.771 3.229 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.160 1.160 7 C -0.553 4.553 8 H 0.054 0.946 9 C -0.028 4.028 10 C -0.117 4.117 11 C -0.132 4.132 12 C -0.156 4.156 13 C -0.145 4.145 14 C -0.102 4.102 15 H 0.116 0.884 16 C -0.140 4.140 17 C -0.212 4.212 18 C 0.245 3.755 19 O -0.362 6.362 20 H 0.071 0.929 21 H 0.051 0.949 22 H 0.033 0.967 23 H 0.070 0.930 24 H 0.046 0.954 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.109 0.891 28 H 0.100 0.900 29 H 0.132 0.868 30 H 0.088 0.912 31 H 0.140 0.860 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 17.582 -6.480 0.188 18.739 hybrid contribution -1.099 0.941 -0.033 1.447 sum 16.483 -5.539 0.155 17.389 Atomic orbital electron populations 1.70110 1.08520 1.27685 1.53723 1.26083 0.95624 1.03550 0.94833 0.85701 0.79868 0.78358 0.78997 1.19637 1.21188 1.16027 1.21538 0.92022 0.93285 1.48450 0.94584 1.19524 0.94093 0.92396 0.96741 1.21877 0.97665 0.96741 0.95370 1.21627 0.98014 0.97992 0.95564 1.21991 0.93994 0.99813 0.99850 1.22201 0.97966 0.97194 0.97169 1.22461 0.90755 1.00062 0.96920 0.88390 1.22228 0.97461 1.00057 0.94211 1.22661 0.94157 1.03346 1.01047 1.25157 0.89493 0.73776 0.87114 1.90378 1.25314 1.48999 1.71471 0.92916 0.94885 0.96741 0.93030 0.95421 0.90852 0.91228 0.89074 0.89976 0.86805 0.91198 0.85991 0.88861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -64.15 13.96 21.45 0.30 -63.85 16 2 C -0.01 -0.36 5.47 84.66 0.46 0.10 16 3 Si 0.95 45.80 27.47 68.60 1.88 47.69 16 4 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 7 C -0.51 -31.28 8.15 25.60 0.21 -31.07 16 8 H 0.04 2.51 6.52 -2.91 -0.02 2.49 16 9 C 0.01 0.47 2.84 29.85 0.08 0.55 16 10 C -0.12 -4.45 0.52 -52.53 -0.03 -4.47 16 11 C -0.09 -3.59 5.32 30.75 0.16 -3.43 16 12 C -0.12 -3.05 6.78 30.92 0.21 -2.84 16 13 C -0.11 -2.16 6.06 31.16 0.19 -1.97 16 14 C -0.08 -2.15 3.53 -9.44 -0.03 -2.18 16 15 H 0.10 2.40 7.95 -2.39 -0.02 2.38 16 16 C -0.10 -2.14 6.11 31.44 0.19 -1.94 16 17 C -0.17 -4.62 6.33 30.39 0.19 -4.43 16 18 C 0.37 15.07 6.16 29.26 0.18 15.25 16 19 O -0.49 -25.76 16.04 -1.44 -0.02 -25.78 16 20 H 0.26 16.34 8.31 -92.71 -0.77 15.57 16 21 H 0.03 1.51 7.19 -2.39 -0.02 1.49 16 22 H 0.01 0.67 7.57 -2.38 -0.02 0.65 16 23 H 0.05 2.19 7.58 -2.39 -0.02 2.17 16 24 H 0.03 1.18 7.76 -2.39 -0.02 1.16 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.08 1.36 7.26 -2.39 -0.02 1.34 16 29 H 0.11 1.50 7.85 -2.39 -0.02 1.48 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.12 2.54 7.99 -2.39 -0.02 2.53 16 32 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -78.23 252.19 5.02 -73.21 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: 1.03 Total: 5.18 kcal Atomic # 6 Polarization: -38.27 SS G_CDS: 1.82 Total: -36.44 kcal Atomic # 7 Polarization: -64.15 SS G_CDS: 0.30 Total: -63.85 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.02 Total: -25.78 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.88 Total: 47.69 kcal Total: -78.23 5.02 -73.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038523294.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.847 kcal (2) G-P(sol) polarization free energy of solvation -78.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds