Wall clock time and date at job start Mon Mar 30 2020 02:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46973 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.85097 * 54.30420 * 10 9 7 12 12 C 1.53691 * 109.85496 * 175.26025 * 10 9 7 13 13 C 1.54087 * 105.42934 * 137.41382 * 12 10 9 14 14 H 1.09004 * 112.24338 * 209.27675 * 13 12 10 15 15 C 1.53635 * 109.26184 * 84.13236 * 13 12 10 16 16 C 1.53561 * 107.23950 * 229.80716 * 15 13 12 17 17 C 1.53666 * 107.15194 * 0.23012 * 16 15 13 18 18 C 1.54763 * 106.19912 * 18.06892 * 17 16 15 19 19 H 1.08997 * 112.44343 * 209.40303 * 18 17 16 20 20 C 1.51118 * 109.86134 * 293.33657 * 10 9 7 21 21 O 1.20759 * 126.01288 * 60.98555 * 20 10 9 22 22 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 24 24 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 25 25 H 1.08999 * 110.25249 * 256.39674 * 12 10 9 26 26 H 1.08995 * 110.25420 * 18.33355 * 12 10 9 27 27 H 1.09003 * 109.88927 * 349.21578 * 15 13 12 28 28 H 1.08998 * 109.88725 * 110.23648 * 15 13 12 29 29 H 1.08999 * 109.90106 * 119.60892 * 16 15 13 30 30 H 1.08998 * 109.90198 * 240.67115 * 16 15 13 31 31 H 1.09003 * 110.15915 * 137.53789 * 17 16 15 32 32 H 1.09003 * 110.16192 * 259.23429 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 1 3.5813 -3.1847 -0.8330 12 6 5.5539 -2.6485 -0.1189 13 6 6.0343 -3.7173 0.8815 14 1 7.0275 -3.4985 1.2739 15 6 5.9640 -5.1010 0.2176 16 6 5.2212 -6.0331 1.1859 17 6 4.8469 -5.1987 2.4207 18 6 4.9503 -3.7165 1.9878 19 1 5.2131 -3.0584 2.8159 20 6 3.6614 -3.3085 1.3047 21 8 2.5441 -3.4868 1.7268 22 1 -0.4850 0.8400 -0.0004 23 1 3.8752 -0.6796 -0.8894 24 1 3.8746 -0.6807 0.8905 25 1 5.8516 -2.9190 -1.1320 26 1 5.9605 -1.6723 0.1454 27 1 5.4186 -5.0333 -0.7237 28 1 6.9709 -5.4769 0.0363 29 1 4.3189 -6.4185 0.7111 30 1 5.8696 -6.8598 1.4760 31 1 3.8298 -5.4308 2.7367 32 1 5.5463 -5.3955 3.2333 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038865464.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:09 Heat of formation + Delta-G solvation = -63.762087 kcal Electronic energy + Delta-G solvation = -14002.479700 eV Core-core repulsion = 11733.732048 eV Total energy + Delta-G solvation = -2268.747651 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.15714 -36.84037 -34.33777 -32.27831 -29.61534 -29.18879 -25.93756 -24.35303 -21.79427 -20.29253 -19.53480 -18.04365 -16.59126 -16.19967 -15.00967 -14.58543 -14.32737 -14.10947 -13.38873 -13.24455 -12.54495 -12.43766 -11.80164 -11.73641 -11.41750 -11.20783 -10.98080 -10.89749 -10.61837 -10.58560 -10.40020 -10.17647 -9.87222 -9.48285 -9.19481 -8.52858 -8.32336 -5.95416 -3.93061 2.80076 3.32967 3.40183 3.41758 4.47290 4.49555 4.65845 4.73977 5.06175 5.28699 5.36860 5.47071 5.53540 5.55283 5.67670 5.78609 5.87463 5.94661 6.01496 6.11083 6.17002 6.22182 6.33267 6.40661 6.45959 6.61274 6.69596 7.15231 7.27381 7.80476 8.38764 8.61973 9.16804 9.65307 11.18266 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.050693 B = 0.009399 C = 0.008614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.213977 B = 2978.194876 C = 3249.805766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.874 3.126 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.516 4.516 8 H 0.081 0.919 9 C 0.002 3.998 10 C -0.134 4.134 11 H 0.092 0.908 12 C -0.114 4.114 13 C -0.086 4.086 14 H 0.084 0.916 15 C -0.119 4.119 16 C -0.125 4.125 17 C -0.112 4.112 18 C -0.154 4.154 19 H 0.107 0.893 20 C 0.384 3.616 21 O -0.422 6.422 22 H 0.261 0.739 23 H 0.026 0.974 24 H 0.012 0.988 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.448 -8.249 1.610 16.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.702 3.298 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.554 4.554 8 H 0.100 0.900 9 C -0.036 4.036 10 C -0.153 4.153 11 H 0.110 0.890 12 C -0.152 4.152 13 C -0.105 4.105 14 H 0.102 0.898 15 C -0.157 4.157 16 C -0.162 4.162 17 C -0.150 4.150 18 C -0.174 4.174 19 H 0.125 0.875 20 C 0.256 3.744 21 O -0.292 6.292 22 H 0.071 0.929 23 H 0.044 0.956 24 H 0.030 0.970 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.671 -8.235 1.825 16.063 hybrid contribution 0.440 1.027 0.019 1.118 sum 14.110 -7.208 1.844 15.951 Atomic orbital electron populations 1.69921 1.06231 1.26583 1.51341 1.25011 0.94713 0.98849 0.94878 0.86874 0.80398 0.84138 0.78429 1.20423 1.21350 1.19040 1.21214 0.89070 0.95034 1.50102 0.90045 1.19530 0.97816 0.89502 0.96730 1.22045 0.94578 1.00794 0.97870 0.89020 1.22243 0.95519 0.98646 0.98772 1.22243 0.97885 0.95288 0.95076 0.89766 1.22088 1.00213 0.94397 0.98966 1.21990 1.00139 0.98105 0.96003 1.22127 1.02183 0.92926 0.97728 1.23132 0.96950 0.97991 0.99282 0.87531 1.24421 0.88593 0.73886 0.87458 1.90395 1.25773 1.44696 1.68339 0.92877 0.95581 0.97015 0.91307 0.91301 0.91329 0.91904 0.91908 0.91904 0.90982 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.84 13.96 55.43 0.77 -28.07 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 22.06 27.47 -169.99 -4.67 17.39 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.52 -15.21 8.82 -34.44 -0.30 -15.51 16 8 H 0.08 2.66 7.20 -52.49 -0.38 2.28 16 9 C 0.00 0.04 3.31 -27.88 -0.09 -0.06 16 10 C -0.13 -2.63 2.71 -91.21 -0.25 -2.88 16 11 H 0.09 1.85 8.14 -51.93 -0.42 1.42 16 12 C -0.11 -1.68 5.66 -25.80 -0.15 -1.83 16 13 C -0.09 -1.10 3.85 -88.73 -0.34 -1.44 16 14 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 15 C -0.12 -1.38 6.11 -26.11 -0.16 -1.53 16 16 C -0.12 -1.47 6.69 -26.09 -0.17 -1.65 16 17 C -0.11 -1.48 6.22 -25.46 -0.16 -1.64 16 18 C -0.15 -2.32 3.84 -89.47 -0.34 -2.67 16 19 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 20 C 0.38 7.76 6.11 -28.45 -0.17 7.58 16 21 O -0.42 -10.40 16.12 6.00 0.10 -10.30 16 22 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 23 H 0.03 0.61 7.20 -51.93 -0.37 0.24 16 24 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 25 H 0.07 0.90 7.78 -51.93 -0.40 0.50 16 26 H 0.07 1.00 7.76 -51.93 -0.40 0.59 16 27 H 0.07 0.83 7.49 -51.93 -0.39 0.44 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.06 7.65 -51.93 -0.40 0.67 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 255.03 15.07 3.84 3.84 Total: -1.00 -32.98 255.03 -7.06 -40.04 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -4.86 Total: -3.18 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -2.24 Total: -19.72 kcal Atomic # 7 Polarization: -28.84 SS G_CDS: 0.77 Total: -28.07 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.10 Total: -10.30 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -32.98 -7.06 -40.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038865464.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.722 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds