Wall clock time and date at job start Mon Mar 30 2020 02:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46973 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.85097 * 54.30420 * 10 9 7 12 12 C 1.53691 * 109.85496 * 175.26025 * 10 9 7 13 13 C 1.54087 * 105.42934 * 137.41382 * 12 10 9 14 14 H 1.09004 * 112.24338 * 209.27675 * 13 12 10 15 15 C 1.53635 * 109.26184 * 84.13236 * 13 12 10 16 16 C 1.53561 * 107.23950 * 229.80716 * 15 13 12 17 17 C 1.53666 * 107.15194 * 0.23012 * 16 15 13 18 18 C 1.54763 * 106.19912 * 18.06892 * 17 16 15 19 19 H 1.08997 * 112.44343 * 209.40303 * 18 17 16 20 20 C 1.51118 * 109.86134 * 293.33657 * 10 9 7 21 21 O 1.20759 * 126.01288 * 60.98555 * 20 10 9 22 22 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 24 24 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 25 25 H 1.08999 * 110.25249 * 256.39674 * 12 10 9 26 26 H 1.08995 * 110.25420 * 18.33355 * 12 10 9 27 27 H 1.09003 * 109.88927 * 349.21578 * 15 13 12 28 28 H 1.08998 * 109.88725 * 110.23648 * 15 13 12 29 29 H 1.08999 * 109.90106 * 119.60892 * 16 15 13 30 30 H 1.08998 * 109.90198 * 240.67115 * 16 15 13 31 31 H 1.09003 * 110.15915 * 137.53789 * 17 16 15 32 32 H 1.09003 * 110.16192 * 259.23429 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 1 3.5813 -3.1847 -0.8330 12 6 5.5539 -2.6485 -0.1189 13 6 6.0343 -3.7173 0.8815 14 1 7.0275 -3.4985 1.2739 15 6 5.9640 -5.1010 0.2176 16 6 5.2212 -6.0331 1.1859 17 6 4.8469 -5.1987 2.4207 18 6 4.9503 -3.7165 1.9878 19 1 5.2131 -3.0584 2.8159 20 6 3.6614 -3.3085 1.3047 21 8 2.5441 -3.4868 1.7268 22 1 -0.4850 0.8400 -0.0004 23 1 3.8752 -0.6796 -0.8894 24 1 3.8746 -0.6807 0.8905 25 1 5.8516 -2.9190 -1.1320 26 1 5.9605 -1.6723 0.1454 27 1 5.4186 -5.0333 -0.7237 28 1 6.9709 -5.4769 0.0363 29 1 4.3189 -6.4185 0.7111 30 1 5.8696 -6.8598 1.4760 31 1 3.8298 -5.4308 2.7367 32 1 5.5463 -5.3955 3.2333 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038865464.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:09 Heat of formation + Delta-G solvation = -85.077837 kcal Electronic energy + Delta-G solvation = -14003.404020 eV Core-core repulsion = 11733.732048 eV Total energy + Delta-G solvation = -2269.671972 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.51362 -38.32318 -36.01580 -34.27157 -31.23216 -30.30595 -27.58765 -25.61920 -23.71541 -21.45229 -20.70463 -19.55511 -18.79615 -17.40163 -16.55060 -16.35998 -15.76624 -15.35275 -15.00279 -14.70070 -14.35787 -13.91208 -13.59832 -13.47317 -12.73973 -12.55103 -12.28812 -12.13337 -12.00641 -11.87604 -11.69169 -11.59523 -11.47461 -11.27688 -10.92176 -10.79197 -9.97512 -8.27125 -6.31605 1.19606 1.32984 1.36168 1.47591 2.35488 3.06066 3.28750 3.47546 3.70657 3.88132 4.16944 4.28005 4.34718 4.45668 4.64740 4.65897 4.77126 4.83082 4.90654 4.92023 5.07379 5.13077 5.16691 5.22730 5.27312 5.37080 5.37848 5.51988 5.58333 5.64778 6.30900 6.73943 6.86916 7.30837 8.90886 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.050693 B = 0.009399 C = 0.008614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.213977 B = 2978.194876 C = 3249.805766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.006 4.006 3 Si 0.954 3.046 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.234 1.234 7 C -0.527 4.527 8 H 0.025 0.975 9 C 0.004 3.996 10 C -0.142 4.142 11 H 0.073 0.927 12 C -0.105 4.105 13 C -0.073 4.073 14 H 0.125 0.875 15 C -0.120 4.120 16 C -0.126 4.126 17 C -0.112 4.112 18 C -0.153 4.153 19 H 0.123 0.877 20 C 0.372 3.628 21 O -0.486 6.486 22 H 0.264 0.736 23 H 0.040 0.960 24 H 0.019 0.981 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.056 0.944 28 H 0.095 0.905 29 H 0.041 0.959 30 H 0.091 0.909 31 H 0.042 0.958 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.888 -7.698 1.703 20.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.202 4.202 3 Si 0.777 3.223 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.156 1.156 7 C -0.565 4.565 8 H 0.044 0.956 9 C -0.033 4.033 10 C -0.161 4.161 11 H 0.092 0.908 12 C -0.142 4.142 13 C -0.091 4.091 14 H 0.143 0.857 15 C -0.157 4.157 16 C -0.163 4.163 17 C -0.149 4.149 18 C -0.171 4.171 19 H 0.140 0.860 20 C 0.248 3.752 21 O -0.360 6.360 22 H 0.073 0.927 23 H 0.058 0.942 24 H 0.037 0.963 25 H 0.109 0.891 26 H 0.099 0.901 27 H 0.075 0.925 28 H 0.114 0.886 29 H 0.060 0.940 30 H 0.110 0.890 31 H 0.061 0.939 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 18.154 -7.706 1.903 19.814 hybrid contribution -1.061 0.756 -0.018 1.302 sum 17.094 -6.951 1.885 18.549 Atomic orbital electron populations 1.70118 1.08644 1.27967 1.53159 1.26164 0.95733 1.03907 0.94360 0.85606 0.79901 0.77693 0.79125 1.19540 1.20921 1.15644 1.21528 0.92327 0.93053 1.49572 0.95632 1.19468 0.93799 0.92727 0.97341 1.22117 0.98709 0.97876 0.97378 0.90845 1.22216 0.90727 1.00336 1.00937 1.22327 0.98490 0.95045 0.93211 0.85740 1.22135 1.01783 0.93754 0.98032 1.22024 0.99997 0.98948 0.95363 1.22165 1.01481 0.91839 0.99447 1.23193 0.94316 0.99261 1.00378 0.85957 1.25296 0.89563 0.72305 0.87996 1.90366 1.28742 1.47079 1.69824 0.92713 0.94167 0.96269 0.89137 0.90087 0.92546 0.88604 0.94015 0.89050 0.93885 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -64.06 13.96 21.45 0.30 -63.76 16 2 C -0.01 -0.39 5.47 84.65 0.46 0.08 16 3 Si 0.95 45.45 27.47 68.60 1.88 47.34 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.23 -9.84 6.54 99.48 0.65 -9.19 16 7 C -0.53 -32.41 8.82 25.60 0.23 -32.18 16 8 H 0.03 1.80 7.20 -2.92 -0.02 1.78 16 9 C 0.00 0.19 3.31 29.85 0.10 0.29 16 10 C -0.14 -5.55 2.71 -11.17 -0.03 -5.58 16 11 H 0.07 3.08 8.14 -2.38 -0.02 3.06 16 12 C -0.10 -2.70 5.66 31.19 0.18 -2.52 16 13 C -0.07 -1.51 3.85 -9.57 -0.04 -1.54 16 14 H 0.12 1.77 8.14 -2.38 -0.02 1.75 16 15 C -0.12 -2.28 6.11 31.00 0.19 -2.09 16 16 C -0.13 -2.66 6.69 31.01 0.21 -2.45 16 17 C -0.11 -2.73 6.22 31.42 0.20 -2.54 16 18 C -0.15 -4.25 3.84 -10.05 -0.04 -4.29 16 19 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 20 C 0.37 15.36 6.11 29.48 0.18 15.54 16 21 O -0.49 -25.70 16.12 -1.45 -0.02 -25.72 16 22 H 0.26 16.38 8.31 -92.71 -0.77 15.61 16 23 H 0.04 1.79 7.20 -2.39 -0.02 1.78 16 24 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 25 H 0.09 1.98 7.78 -2.39 -0.02 1.96 16 26 H 0.08 1.94 7.76 -2.39 -0.02 1.92 16 27 H 0.06 1.22 7.49 -2.39 -0.02 1.20 16 28 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.04 1.30 7.65 -2.39 -0.02 1.28 16 32 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -78.04 255.03 4.82 -73.22 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: 1.03 Total: 6.23 kcal Atomic # 6 Polarization: -38.93 SS G_CDS: 1.63 Total: -37.30 kcal Atomic # 7 Polarization: -64.06 SS G_CDS: 0.30 Total: -63.76 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.02 Total: -25.72 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.88 Total: 47.34 kcal Total: -78.04 4.82 -73.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038865464.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.858 kcal (2) G-P(sol) polarization free energy of solvation -78.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds