Wall clock time and date at job start Mon Mar 30 2020 02:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35678 * 117.00479 * 2 1 4 4 C 1.38918 * 119.68792 * 180.25869 * 3 2 1 5 5 C 1.38382 * 119.11091 * 180.31651 * 4 3 2 6 6 C 1.50700 * 120.75616 * 179.71106 * 5 4 3 7 7 N 1.46498 * 109.46769 * 269.71513 * 6 5 4 8 8 C 1.36943 * 119.99752 * 179.72432 * 7 6 5 9 9 H 1.08002 * 119.99793 * 0.27665 * 8 7 6 10 10 C 1.38811 * 120.00012 * 180.27737 * 8 7 6 11 11 N 1.31624 * 119.99698 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00072 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47213 * 60.00246 * 12 10 8 14 14 H 1.48502 * 109.47317 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47081 * 299.99875 * 12 10 8 16 16 C 1.38824 * 118.48291 * 359.43169 * 5 4 3 17 17 C 1.38049 * 119.29089 * 0.27934 * 16 5 4 18 18 N 1.31961 * 120.83716 * 0.02562 * 17 16 5 19 19 H 1.09002 * 109.47336 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.46841 * 300.00148 * 1 2 3 21 21 H 1.09004 * 109.47369 * 59.99855 * 1 2 3 22 22 H 1.07996 * 120.44512 * 0.02562 * 4 3 2 23 23 H 1.09004 * 109.47210 * 149.71871 * 6 5 4 24 24 H 1.08994 * 109.47121 * 29.71841 * 6 5 4 25 25 H 0.97001 * 120.00384 * 0.02562 * 7 6 5 26 26 H 0.96999 * 119.99739 * 180.02562 * 11 10 8 27 27 H 1.07999 * 120.35469 * 180.25500 * 16 5 4 28 28 H 1.07999 * 119.58294 * 180.02562 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2739 -0.0054 5 6 4.0486 2.5131 0.0013 6 6 5.5513 2.6268 0.0023 7 7 6.0373 2.6631 1.3838 8 6 7.3801 2.7589 1.6349 9 1 8.0804 2.8122 0.8144 10 6 7.8410 2.7875 2.9439 11 7 6.9875 2.7221 3.9438 12 14 9.6726 2.9189 3.2865 13 1 10.1983 4.1748 2.6936 14 1 9.9023 2.9296 4.7536 15 1 10.3734 1.7561 2.6847 16 6 3.2506 3.6490 0.0012 17 6 1.8771 3.5096 0.0003 18 7 1.3186 2.3140 0.0001 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 4.0228 0.3695 -0.0101 23 1 5.8467 3.5419 -0.5110 24 1 5.9810 1.7670 -0.5117 25 1 5.4083 2.6149 2.1207 26 1 7.3096 2.7424 4.8585 27 1 3.6994 4.6313 0.0022 28 1 1.2518 4.3902 -0.0002 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062070396.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:39 Heat of formation + Delta-G solvation = 9.209925 kcal Electronic energy + Delta-G solvation = -12908.070438 eV Core-core repulsion = 10538.946748 eV Total energy + Delta-G solvation = -2369.123691 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.34316 -37.80671 -35.02289 -32.59563 -30.56206 -30.19126 -27.24850 -25.81570 -23.21034 -22.86853 -21.07631 -17.85276 -17.00713 -16.73390 -15.83038 -15.60326 -14.69320 -14.30560 -14.08422 -13.50465 -13.29342 -12.94247 -12.41550 -12.05217 -11.58549 -11.39810 -11.08589 -10.94236 -10.81176 -10.18394 -9.87132 -9.39746 -9.26433 -8.93355 -8.25448 -6.99383 -5.79307 -3.10250 1.44695 1.55841 3.26240 3.43152 3.47224 3.48603 4.04459 4.52667 4.59261 5.12501 5.27011 5.34238 5.35679 5.45095 5.52036 5.58268 5.67996 5.95154 6.09324 6.22067 6.32363 6.47898 6.70763 6.92012 7.44071 7.65652 8.07174 8.37677 9.49337 10.03243 10.39037 11.43033 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.055323 B = 0.006535 C = 0.006284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.997744 B = 4283.352024 C = 4454.598597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.311 6.311 3 C 0.310 3.690 4 C -0.173 4.173 5 C -0.001 4.001 6 C 0.186 3.814 7 N -0.726 5.726 8 C -0.246 4.246 9 H 0.073 0.927 10 C -0.011 4.011 11 N -0.931 5.931 12 Si 0.911 3.089 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.285 1.285 16 C -0.192 4.192 17 C 0.128 3.872 18 N -0.548 5.548 19 H 0.091 0.909 20 H 0.056 0.944 21 H 0.055 0.945 22 H 0.140 0.860 23 H 0.036 0.964 24 H 0.034 0.966 25 H 0.386 0.614 26 H 0.257 0.743 27 H 0.137 0.863 28 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.935 -1.261 -8.611 13.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.218 6.218 3 C 0.132 3.868 4 C -0.194 4.194 5 C -0.009 4.009 6 C 0.059 3.941 7 N -0.371 5.371 8 C -0.376 4.376 9 H 0.090 0.910 10 C -0.207 4.207 11 N -0.579 5.579 12 Si 0.741 3.259 13 H -0.212 1.212 14 H -0.216 1.216 15 H -0.212 1.212 16 C -0.213 4.213 17 C -0.026 4.026 18 N -0.272 5.272 19 H 0.110 0.890 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.158 0.842 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.220 0.780 26 H 0.067 0.933 27 H 0.155 0.845 28 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -11.550 -1.597 -8.620 14.500 hybrid contribution 1.384 0.251 0.579 1.521 sum -10.166 -1.346 -8.041 13.032 Atomic orbital electron populations 1.22775 0.77867 1.02455 1.02183 1.86233 1.22408 1.24905 1.88252 1.19784 0.89332 0.84492 0.93205 1.21017 0.91542 0.99570 1.07309 1.20544 0.97807 0.91575 0.90942 1.19711 0.85291 0.99293 0.89815 1.42286 1.05389 1.89243 1.00149 1.19191 0.83290 1.43255 0.91905 0.90954 1.24777 0.97858 1.02598 0.95497 1.69670 1.32943 1.56977 0.98306 0.86218 0.84793 0.77933 0.76916 1.21157 1.21639 1.21157 1.21958 0.94381 0.99901 1.05090 1.22279 0.92817 0.93391 0.94162 1.67221 1.41033 0.98871 1.20122 0.89022 0.92510 0.92635 0.84193 0.94654 0.94798 0.78005 0.93334 0.84501 0.82713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.38 101.05 1.05 1.54 15 2 O -0.31 -4.83 10.48 -18.74 -0.20 -5.03 15 3 C 0.31 5.26 7.49 -17.12 -0.13 5.14 15 4 C -0.17 -3.05 9.74 -39.28 -0.38 -3.44 15 5 C 0.00 -0.01 5.28 -104.35 -0.55 -0.56 15 6 C 0.19 3.78 6.43 -5.19 -0.03 3.75 15 7 N -0.73 -18.63 5.59 -61.09 -0.34 -18.97 15 8 C -0.25 -6.88 9.99 -15.06 -0.15 -7.03 15 9 H 0.07 1.93 7.83 -52.49 -0.41 1.52 15 10 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 15 11 N -0.93 -28.38 13.06 55.49 0.72 -27.66 15 12 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 15 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 14 H -0.29 -7.18 7.11 56.52 0.40 -6.78 15 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 16 C -0.19 -3.06 9.81 -39.43 -0.39 -3.45 15 17 C 0.13 1.87 11.18 -17.57 -0.20 1.68 15 18 N -0.55 -8.83 9.22 -13.33 -0.12 -8.95 15 19 H 0.09 0.78 8.14 -51.93 -0.42 0.36 15 20 H 0.06 0.66 8.10 -51.93 -0.42 0.24 15 21 H 0.05 0.61 8.10 -51.93 -0.42 0.19 15 22 H 0.14 2.40 8.06 -52.49 -0.42 1.97 15 23 H 0.04 0.70 8.10 -51.93 -0.42 0.27 15 24 H 0.03 0.68 8.10 -51.93 -0.42 0.26 15 25 H 0.39 10.62 7.66 -40.82 -0.31 10.31 15 26 H 0.26 7.56 8.31 -40.82 -0.34 7.22 15 27 H 0.14 1.98 8.06 -52.49 -0.42 1.56 15 28 H 0.16 1.71 8.06 -52.49 -0.42 1.29 15 LS Contribution 253.55 15.07 3.82 3.82 Total: -1.00 -31.50 253.55 -5.25 -36.75 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -3.23 Total: 5.52 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -0.88 Total: -2.78 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 0.26 Total: -55.59 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.20 Total: -5.03 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -31.50 -5.25 -36.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062070396.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.957 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds